mat3ra-esse 2025.7.15.post0__py3-none-any.whl → 2025.7.29.post0__py3-none-any.whl
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- mat3ra/esse/data/examples.py +1 -1
- mat3ra/esse/data/schemas.py +1 -1
- mat3ra/esse/models/apse/file/applications/espresso/7.2/pw_x.py +6 -6
- mat3ra/esse/models/core/abstract/vector_2d.py +13 -0
- mat3ra/esse/models/core/primitive/array_of_2_numbers.py +13 -0
- mat3ra/esse/models/core/reusable/energy.py +2 -2
- mat3ra/esse/models/element.py +6 -6
- mat3ra/esse/models/material/__init__.py +14 -14
- mat3ra/esse/models/materials_category/compound_pristine_structures/two_dimensional/interface/__init__.py +3 -0
- mat3ra/esse/models/materials_category/compound_pristine_structures/two_dimensional/interface/configuration.py +6039 -0
- mat3ra/esse/models/materials_category/defective_structures/one_dimensional/grain_boundary_linear/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defective_structures/one_dimensional/grain_boundary_linear/configuration.py +6043 -0
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/adatom/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/adatom/configuration.py +2116 -0
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/base_configuration.py +1561 -0
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/grain_boundary_planar/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/grain_boundary_planar/configuration.py +6039 -0
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/island/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/island/configuration.py +2888 -0
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/terrace/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defective_structures/two_dimensional/terrace/configuration.py +2892 -0
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/base_configuration.py +544 -0
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/interstitial.py +1099 -0
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/substitutional.py +1099 -0
- mat3ra/esse/models/materials_category/defective_structures/zero_dimensional/point_defect/vacancy.py +556 -0
- mat3ra/esse/models/materials_category/pristine_structures/three_dimensional/ideal_crystal.py +14 -14
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/nanoribbon.py +1582 -0
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/nanotape.py +1148 -0
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab.py +78 -94
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab_strained_supercell.py +1147 -0
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab_strained_supercell_with_gap.py +1151 -0
- mat3ra/esse/models/materials_category/processed_structures/two_dimensional/passivation/__init__.py +3 -0
- mat3ra/esse/models/materials_category/processed_structures/two_dimensional/passivation/configuration.py +1232 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/one_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/one_dimensional/miller_indices_2d.py +16 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/crystal_site.py +527 -2
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/point_defect_site.py +676 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/void_region.py +555 -0
- mat3ra/esse/models/materials_category_components/entities/auxiliary/zero_dimensional/void_site.py +1576 -0
- mat3ra/esse/models/materials_category_components/entities/core/three_dimensional/crystal.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/core/two_dimensional/vacuum.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/core/zero_dimensional/vacancy.py +22 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_base.py +541 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines.py +545 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/one_dimensional/crystal_lattice_lines_unique_repeated.py +708 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/crystal_lattice_base.py +541 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_uniform.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/supercell.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers.py +4 -4
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique.py +4 -4
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique_repeated.py +4 -4
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/crystal_lattice_planes.py +18 -18
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_stack_configuration.py +1561 -0
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_unit_cell.py +74 -77
- mat3ra/esse/models/materials_category_components/operations/core/combinations/enums.py +13 -0
- mat3ra/esse/models/materials_category_components/operations/core/combinations/merge.py +9 -981
- mat3ra/esse/models/materials_category_components/operations/core/combinations/stack.py +3 -947
- mat3ra/esse/models/materials_category_components/operations/core/modifications/perturb.py +538 -0
- mat3ra/esse/models/properties_directory/derived_properties.py +11 -11
- mat3ra/esse/models/properties_directory/non_scalar/density_of_states.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dispersions.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dos.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/total_energy_contributions.py +50 -50
- mat3ra/esse/models/properties_directory/non_scalar/vibrational_spectrum.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/electron_affinity.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/fermi_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/formation_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/ionization_potential.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/reaction_energy_barrier.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/surface_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/total_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/valence_band_offset.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/zero_point_energy.py +2 -2
- mat3ra/esse/models/properties_directory/structural/basis/__init__.py +2 -2
- mat3ra/esse/models/properties_directory/structural/molecular_pattern.py +4 -4
- mat3ra/esse/models/properties_directory/workflow/convergence/ionic.py +2 -2
- {mat3ra_esse-2025.7.15.post0.dist-info → mat3ra_esse-2025.7.29.post0.dist-info}/METADATA +1 -1
- {mat3ra_esse-2025.7.15.post0.dist-info → mat3ra_esse-2025.7.29.post0.dist-info}/RECORD +85 -44
- {mat3ra_esse-2025.7.15.post0.dist-info → mat3ra_esse-2025.7.29.post0.dist-info}/WHEEL +0 -0
- {mat3ra_esse-2025.7.15.post0.dist-info → mat3ra_esse-2025.7.29.post0.dist-info}/licenses/LICENSE.md +0 -0
- {mat3ra_esse-2025.7.15.post0.dist-info → mat3ra_esse-2025.7.29.post0.dist-info}/top_level.txt +0 -0
mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_unit_cell.py
CHANGED
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@@ -265,13 +265,13 @@ class Value(Enum):
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Og = "Og"
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class
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class Value71(Enum):
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X = "X"
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Vac = "Vac"
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class AtomicElementSchema(BaseModel):
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value: Union[Value,
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value: Union[Value, Value71]
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"""
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All elements, including extra elements
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"""
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value: float
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class Name285(Enum):
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density = "density"
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class Units129(Enum):
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g_cm_3 = "g/cm^3"
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class DensitySchema(BaseModel):
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name: Literal["1#-datamodel-code-generator-#-object-#-special-#"]
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units: Optional[Units129] = None
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class Units130(Enum):
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angstrom = "angstrom"
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class ScalarSchema(BaseModel):
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units: Optional[Units130] = None
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value: float
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class Name286(Enum):
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symmetry = "symmetry"
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name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
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class Name287(Enum):
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elemental_ratio = "elemental_ratio"
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"""
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class
|
|
935
|
+
class Name294(Enum):
|
|
936
936
|
symmetry = "symmetry"
|
|
937
937
|
|
|
938
938
|
|
|
939
|
-
class
|
|
939
|
+
class SymmetrySchema30(BaseModel):
|
|
940
940
|
pointGroupSymbol: Optional[str] = None
|
|
941
941
|
"""
|
|
942
942
|
point group symbol in Schoenflies notation
|
|
@@ -945,18 +945,18 @@ class SymmetrySchema13(BaseModel):
|
|
|
945
945
|
"""
|
|
946
946
|
space group symbol in Hermann–Mauguin notation
|
|
947
947
|
"""
|
|
948
|
-
tolerance: Optional[
|
|
948
|
+
tolerance: Optional[ScalarSchema32] = Field(None, title="scalar schema")
|
|
949
949
|
"""
|
|
950
950
|
tolerance used for symmetry calculation
|
|
951
951
|
"""
|
|
952
952
|
name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
|
|
953
953
|
|
|
954
954
|
|
|
955
|
-
class
|
|
955
|
+
class Name295(Enum):
|
|
956
956
|
elemental_ratio = "elemental_ratio"
|
|
957
957
|
|
|
958
958
|
|
|
959
|
-
class
|
|
959
|
+
class ElementalRatio31(BaseModel):
|
|
960
960
|
name: Literal["3#-datamodel-code-generator-#-object-#-special-#"]
|
|
961
961
|
value: confloat(ge=0.0, le=1.0)
|
|
962
962
|
element: Optional[str] = None
|
|
@@ -965,11 +965,11 @@ class ElementalRatio14(BaseModel):
|
|
|
965
965
|
"""
|
|
966
966
|
|
|
967
967
|
|
|
968
|
-
class
|
|
968
|
+
class Name296(Enum):
|
|
969
969
|
p_norm = "p-norm"
|
|
970
970
|
|
|
971
971
|
|
|
972
|
-
class
|
|
972
|
+
class PNorm31(BaseModel):
|
|
973
973
|
name: Literal["4#-datamodel-code-generator-#-object-#-special-#"]
|
|
974
974
|
degree: Optional[int] = None
|
|
975
975
|
"""
|
|
@@ -978,56 +978,56 @@ class PNorm14(BaseModel):
|
|
|
978
978
|
value: float
|
|
979
979
|
|
|
980
980
|
|
|
981
|
-
class
|
|
981
|
+
class Name297(Enum):
|
|
982
982
|
inchi = "inchi"
|
|
983
983
|
|
|
984
984
|
|
|
985
|
-
class
|
|
985
|
+
class InChIRepresentationSchema31(BaseModel):
|
|
986
986
|
name: Literal["5#-datamodel-code-generator-#-object-#-special-#"]
|
|
987
987
|
value: str
|
|
988
988
|
|
|
989
989
|
|
|
990
|
-
class
|
|
990
|
+
class Name298(Enum):
|
|
991
991
|
inchi_key = "inchi_key"
|
|
992
992
|
|
|
993
993
|
|
|
994
|
-
class
|
|
994
|
+
class InChIKeyRepresentationSchema31(BaseModel):
|
|
995
995
|
name: Literal["6#-datamodel-code-generator-#-object-#-special-#"]
|
|
996
996
|
value: str
|
|
997
997
|
|
|
998
998
|
|
|
999
|
-
class
|
|
999
|
+
class DerivedPropertiesSchema31(
|
|
1000
1000
|
RootModel[
|
|
1001
1001
|
Union[
|
|
1002
|
-
|
|
1003
|
-
|
|
1004
|
-
|
|
1005
|
-
|
|
1006
|
-
|
|
1007
|
-
|
|
1008
|
-
|
|
1002
|
+
VolumeSchema30,
|
|
1003
|
+
DensitySchema31,
|
|
1004
|
+
SymmetrySchema30,
|
|
1005
|
+
ElementalRatio31,
|
|
1006
|
+
PNorm31,
|
|
1007
|
+
InChIRepresentationSchema31,
|
|
1008
|
+
InChIKeyRepresentationSchema31,
|
|
1009
1009
|
]
|
|
1010
1010
|
]
|
|
1011
1011
|
):
|
|
1012
1012
|
root: Union[
|
|
1013
|
-
|
|
1014
|
-
|
|
1015
|
-
|
|
1016
|
-
|
|
1017
|
-
|
|
1018
|
-
|
|
1019
|
-
|
|
1013
|
+
VolumeSchema30,
|
|
1014
|
+
DensitySchema31,
|
|
1015
|
+
SymmetrySchema30,
|
|
1016
|
+
ElementalRatio31,
|
|
1017
|
+
PNorm31,
|
|
1018
|
+
InChIRepresentationSchema31,
|
|
1019
|
+
InChIKeyRepresentationSchema31,
|
|
1020
1020
|
] = Field(..., discriminator="name")
|
|
1021
1021
|
|
|
1022
1022
|
|
|
1023
|
-
class
|
|
1023
|
+
class Name299(Enum):
|
|
1024
1024
|
default = "default"
|
|
1025
1025
|
atomsTooClose = "atomsTooClose"
|
|
1026
1026
|
atomsOverlap = "atomsOverlap"
|
|
1027
1027
|
|
|
1028
1028
|
|
|
1029
|
-
class
|
|
1030
|
-
name:
|
|
1029
|
+
class MaterialConsistencyCheckSchema30(BaseModel):
|
|
1030
|
+
name: Name299
|
|
1031
1031
|
"""
|
|
1032
1032
|
Name of the consistency check that is performed, which is listed in an enum.
|
|
1033
1033
|
"""
|
|
@@ -1045,7 +1045,7 @@ class MaterialConsistencyCheckSchema13(BaseModel):
|
|
|
1045
1045
|
"""
|
|
1046
1046
|
|
|
1047
1047
|
|
|
1048
|
-
class
|
|
1048
|
+
class CrystalSchema27(BaseModel):
|
|
1049
1049
|
formula: Optional[str] = None
|
|
1050
1050
|
"""
|
|
1051
1051
|
reduced chemical formula
|
|
@@ -1054,9 +1054,9 @@ class CrystalSchema10(BaseModel):
|
|
|
1054
1054
|
"""
|
|
1055
1055
|
chemical formula based on the number of atoms of each element in the supercell
|
|
1056
1056
|
"""
|
|
1057
|
-
basis:
|
|
1058
|
-
lattice:
|
|
1059
|
-
derivedProperties: Optional[List[
|
|
1057
|
+
basis: BasisSchema30 = Field(..., title="basis schema")
|
|
1058
|
+
lattice: LatticeSchema30 = Field(..., title="lattice schema")
|
|
1059
|
+
derivedProperties: Optional[List[DerivedPropertiesSchema31]] = Field(None, title="derived properties schema")
|
|
1060
1060
|
external: Optional[DatabaseSourceSchema] = Field(None, title="database source schema")
|
|
1061
1061
|
"""
|
|
1062
1062
|
information about a database source
|
|
@@ -1077,7 +1077,7 @@ class CrystalSchema10(BaseModel):
|
|
|
1077
1077
|
"""
|
|
1078
1078
|
Whether to work in the finite molecular picture (usually with atomic orbital basis)
|
|
1079
1079
|
"""
|
|
1080
|
-
consistencyChecks: Optional[List[
|
|
1080
|
+
consistencyChecks: Optional[List[MaterialConsistencyCheckSchema30]] = None
|
|
1081
1081
|
field_id: Optional[str] = Field(None, alias="_id")
|
|
1082
1082
|
"""
|
|
1083
1083
|
entity identity
|
|
@@ -1111,7 +1111,7 @@ class VacuumConfigurationSchema(BaseModel):
|
|
|
1111
1111
|
"""
|
|
1112
1112
|
Size of the vacuum slab in angstroms
|
|
1113
1113
|
"""
|
|
1114
|
-
crystal:
|
|
1114
|
+
crystal: CrystalSchema27 = Field(..., title="Crystal Schema")
|
|
1115
1115
|
"""
|
|
1116
1116
|
A crystal structure, referencing the base material schema
|
|
1117
1117
|
"""
|
|
@@ -1119,12 +1119,9 @@ class VacuumConfigurationSchema(BaseModel):
|
|
|
1119
1119
|
|
|
1120
1120
|
class SlabUnitCellSchema(BaseModel):
|
|
1121
1121
|
stack_components: List[Union[AtomicLayersUniqueRepeatedSchema, VacuumConfigurationSchema]] = Field(
|
|
1122
|
-
..., min_length=2
|
|
1122
|
+
..., max_length=2, min_length=2
|
|
1123
1123
|
)
|
|
1124
|
-
"""
|
|
1125
|
-
Components of the slab unit cell: repeated unique atomic layers and vacuum
|
|
1126
|
-
"""
|
|
1127
|
-
direction: AxisEnum = Field(..., title="Axis Enum")
|
|
1124
|
+
direction: Optional[AxisEnum] = Field("z", title="Axis Enum")
|
|
1128
1125
|
"""
|
|
1129
1126
|
Enum for axis types
|
|
1130
1127
|
"""
|
|
@@ -0,0 +1,13 @@
|
|
|
1
|
+
# generated by datamodel-codegen:
|
|
2
|
+
# filename: materials_category_components/operations/core/combinations/enums.json
|
|
3
|
+
# version: 0.28.5
|
|
4
|
+
|
|
5
|
+
from __future__ import annotations
|
|
6
|
+
|
|
7
|
+
from enum import Enum
|
|
8
|
+
|
|
9
|
+
|
|
10
|
+
class MergeMethodsEnum(Enum):
|
|
11
|
+
ADD = "ADD"
|
|
12
|
+
REPLACE = "REPLACE"
|
|
13
|
+
YIELD = "YIELD"
|