mat3ra-esse 2025.6.5.post0__py3-none-any.whl → 2025.6.14.post0__py3-none-any.whl
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- mat3ra/esse/data/examples.py +1 -1
- mat3ra/esse/data/schemas.py +1 -1
- mat3ra/esse/models/apse/file/applications/espresso/7.2/pw_x.py +6 -6
- mat3ra/esse/models/material/builders/single_material/two_dimensional/slab/selector_parameters.py +1 -1
- mat3ra/esse/models/material/reusable/slab/termination.py +1 -1
- mat3ra/esse/models/material/reusable/slab_configuration_with_termination.py +1 -1
- mat3ra/esse/models/material/reusable/stack/slab_in_stack.py +1 -1
- mat3ra/esse/models/materials_category/defects/two_dimensional/grain_boundary_plane/configuration.py +2 -2
- mat3ra/esse/models/materials_category/multi_material/interfaces/configuration.py +1 -1
- mat3ra/esse/models/materials_category/pristine_structures/two_dimensional/slab.py +428 -15
- mat3ra/esse/models/materials_category_components/entities/auxiliary/two_dimensional/termination.py +1 -1
- mat3ra/esse/models/materials_category_components/entities/core/two_dimensional/vacuum.py +526 -2
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_non_uniform.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/strained_uniform.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/three_dimensional/supercell.py +14 -14
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers.py +1 -1
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique.py +1 -1
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/atomic_layers_unique_repeated.py +1 -1
- mat3ra/esse/models/materials_category_components/entities/reusable/two_dimensional/slab_unit_cell.py +428 -15
- mat3ra/esse/models/materials_category_components/operations/core/combinations/merge.py +413 -0
- mat3ra/esse/models/materials_category_components/operations/core/combinations/stack.py +427 -14
- mat3ra/esse/models/materials_category_components/operations/core/combinations/stack_component.py +427 -14
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dispersions.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dos.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/total_energy_contributions.py +50 -50
- mat3ra/esse/models/properties_directory/non_scalar/vibrational_spectrum.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/reaction_energy_barrier.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/surface_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/total_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/valence_band_offset.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/zero_point_energy.py +2 -2
- mat3ra/esse/models/properties_directory/structural/molecular_pattern.py +4 -4
- {mat3ra_esse-2025.6.5.post0.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/METADATA +1 -1
- {mat3ra_esse-2025.6.5.post0.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/RECORD +37 -37
- {mat3ra_esse-2025.6.5.post0.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/WHEEL +0 -0
- {mat3ra_esse-2025.6.5.post0.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/licenses/LICENSE.md +0 -0
- {mat3ra_esse-2025.6.5.post0.dist-info → mat3ra_esse-2025.6.14.post0.dist-info}/top_level.txt +0 -0
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@@ -131,13 +131,13 @@ class Value(Enum):
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Og = "Og"
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class
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class Value41(Enum):
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X = "X"
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Vac = "Vac"
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class AtomicElementSchema(BaseModel):
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value: Union[Value,
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value: Union[Value, Value41]
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"""
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All elements, including extra elements
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"""
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@@ -285,30 +285,30 @@ class VolumeSchema(BaseModel):
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value: float
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class
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class Name166(Enum):
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density = "density"
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class
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class Units84(Enum):
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g_cm_3 = "g/cm^3"
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class DensitySchema(BaseModel):
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name: Literal["1#-datamodel-code-generator-#-object-#-special-#"]
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units: Optional[
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units: Optional[Units84] = None
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value: float
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class
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class Units85(Enum):
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angstrom = "angstrom"
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class ScalarSchema(BaseModel):
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units: Optional[
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units: Optional[Units85] = None
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value: float
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class
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class Name167(Enum):
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symmetry = "symmetry"
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@@ -328,7 +328,7 @@ class SymmetrySchema(BaseModel):
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name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
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class
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class Name168(Enum):
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elemental_ratio = "elemental_ratio"
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"""
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class
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class Name169(Enum):
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p_norm = "p-norm"
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value: float
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class
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class Name170(Enum):
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inchi = "inchi"
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value: str
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class
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class Name171(Enum):
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inchi_key = "inchi_key"
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@@ -442,7 +442,7 @@ class FileSourceSchema(BaseModel):
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"""
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class
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class Name172(Enum):
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default = "default"
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atomsTooClose = "atomsTooClose"
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atomsOverlap = "atomsOverlap"
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class MaterialConsistencyCheckSchema(BaseModel):
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name:
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name: Name172
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"""
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Name of the consistency check that is performed, which is listed in an enum.
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"""
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z = "z"
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class Value42(Enum):
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H = "H"
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He = "He"
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Li = "Li"
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Be = "Be"
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B = "B"
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C = "C"
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N = "N"
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O = "O"
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F = "F"
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Ne = "Ne"
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Na = "Na"
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Mg = "Mg"
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Al = "Al"
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Si = "Si"
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P = "P"
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S = "S"
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Cl = "Cl"
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Ar = "Ar"
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K = "K"
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Ca = "Ca"
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Sc = "Sc"
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Ti = "Ti"
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V = "V"
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Cr = "Cr"
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Mn = "Mn"
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Fe = "Fe"
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Co = "Co"
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Ni = "Ni"
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Cu = "Cu"
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Zn = "Zn"
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Ga = "Ga"
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Ge = "Ge"
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As = "As"
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Se = "Se"
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Br = "Br"
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Kr = "Kr"
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Rb = "Rb"
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Sr = "Sr"
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Y = "Y"
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Zr = "Zr"
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Nb = "Nb"
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Mo = "Mo"
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Tc = "Tc"
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Ru = "Ru"
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Pd = "Pd"
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Ag = "Ag"
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Cd = "Cd"
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In = "In"
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Sn = "Sn"
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Sb = "Sb"
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Te = "Te"
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I = "I"
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Xe = "Xe"
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Cs = "Cs"
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Ba = "Ba"
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La = "La"
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Ce = "Ce"
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Pr = "Pr"
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Nd = "Nd"
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Pm = "Pm"
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Sm = "Sm"
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Eu = "Eu"
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Gd = "Gd"
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Tb = "Tb"
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Dy = "Dy"
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Ho = "Ho"
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Tm = "Tm"
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Yb = "Yb"
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Lu = "Lu"
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Ta = "Ta"
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W = "W"
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Re = "Re"
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Ir = "Ir"
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Pt = "Pt"
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Tl = "Tl"
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Bi = "Bi"
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At = "At"
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Rn = "Rn"
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Cm = "Cm"
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Cf = "Cf"
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No = "No"
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Lr = "Lr"
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Mt = "Mt"
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Ds = "Ds"
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Rg = "Rg"
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Cn = "Cn"
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class Value43(Enum):
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class AtomicElementSchema17(BaseModel):
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"""
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"""
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id: int
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class BasisSchema15(BaseModel):
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elements: List[AtomicElementSchema17] = Field(..., title="atomic elements schema")
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"""
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atomic elements schema
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atomic coordinates schema
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units: Optional[BasisUnitsEnum] = Field("crystal", title="basis units enum")
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labels: Optional[List[AtomicLabelSchema]] = Field(None, title="atomic labels schema")
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class LatticeVectorsSchema15(BaseModel):
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c: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
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alat: Optional[float] = 1
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class LatticeUnitsSchema16(BaseModel):
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length: Optional[LatticeUnitsLengthEnum] = Field("angstrom", title="lattice units length enum")
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angle: Optional[LatticeUnitsAngleEnum] = Field("degree", title="lattice units angle enum")
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class LatticeSchema15(BaseModel):
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type: Optional[LatticeTypeEnum] = Field("TRI", title="lattice type enum")
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units: Optional[LatticeUnitsSchema16] = Field(
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|
+
default_factory=lambda: LatticeUnitsSchema16.model_validate({"length": "angstrom", "angle": "degree"}),
|
|
737
|
+
title="Lattice units schema",
|
|
738
|
+
)
|
|
739
|
+
|
|
740
|
+
|
|
741
|
+
class Name173(Enum):
|
|
742
|
+
volume = "volume"
|
|
743
|
+
|
|
744
|
+
|
|
745
|
+
class Units86(Enum):
|
|
746
|
+
angstrom_3 = "angstrom^3"
|
|
747
|
+
|
|
748
|
+
|
|
749
|
+
class VolumeSchema15(BaseModel):
|
|
750
|
+
name: Literal["0#-datamodel-code-generator-#-object-#-special-#"]
|
|
751
|
+
units: Optional[Units86] = None
|
|
752
|
+
value: float
|
|
753
|
+
|
|
754
|
+
|
|
755
|
+
class Name174(Enum):
|
|
756
|
+
density = "density"
|
|
757
|
+
|
|
758
|
+
|
|
759
|
+
class Units87(Enum):
|
|
760
|
+
g_cm_3 = "g/cm^3"
|
|
761
|
+
|
|
762
|
+
|
|
763
|
+
class DensitySchema16(BaseModel):
|
|
764
|
+
name: Literal["1#-datamodel-code-generator-#-object-#-special-#"]
|
|
765
|
+
units: Optional[Units87] = None
|
|
766
|
+
value: float
|
|
767
|
+
|
|
768
|
+
|
|
769
|
+
class Units88(Enum):
|
|
770
|
+
angstrom = "angstrom"
|
|
771
|
+
|
|
772
|
+
|
|
773
|
+
class ScalarSchema17(BaseModel):
|
|
774
|
+
units: Optional[Units88] = None
|
|
775
|
+
value: float
|
|
776
|
+
|
|
777
|
+
|
|
778
|
+
class Name175(Enum):
|
|
779
|
+
symmetry = "symmetry"
|
|
780
|
+
|
|
781
|
+
|
|
782
|
+
class SymmetrySchema15(BaseModel):
|
|
783
|
+
pointGroupSymbol: Optional[str] = None
|
|
784
|
+
"""
|
|
785
|
+
point group symbol in Schoenflies notation
|
|
786
|
+
"""
|
|
787
|
+
spaceGroupSymbol: Optional[str] = None
|
|
788
|
+
"""
|
|
789
|
+
space group symbol in Hermann–Mauguin notation
|
|
790
|
+
"""
|
|
791
|
+
tolerance: Optional[ScalarSchema17] = Field(None, title="scalar schema")
|
|
792
|
+
"""
|
|
793
|
+
tolerance used for symmetry calculation
|
|
794
|
+
"""
|
|
795
|
+
name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
|
|
796
|
+
|
|
797
|
+
|
|
798
|
+
class Name176(Enum):
|
|
799
|
+
elemental_ratio = "elemental_ratio"
|
|
800
|
+
|
|
801
|
+
|
|
802
|
+
class ElementalRatio16(BaseModel):
|
|
803
|
+
name: Literal["3#-datamodel-code-generator-#-object-#-special-#"]
|
|
804
|
+
value: confloat(ge=0.0, le=1.0)
|
|
805
|
+
element: Optional[str] = None
|
|
806
|
+
"""
|
|
807
|
+
the element this ratio is for
|
|
808
|
+
"""
|
|
809
|
+
|
|
810
|
+
|
|
811
|
+
class Name177(Enum):
|
|
812
|
+
p_norm = "p-norm"
|
|
813
|
+
|
|
814
|
+
|
|
815
|
+
class PNorm16(BaseModel):
|
|
816
|
+
name: Literal["4#-datamodel-code-generator-#-object-#-special-#"]
|
|
817
|
+
degree: Optional[int] = None
|
|
818
|
+
"""
|
|
819
|
+
degree of the dimensionality of the norm
|
|
820
|
+
"""
|
|
821
|
+
value: float
|
|
822
|
+
|
|
823
|
+
|
|
824
|
+
class Name178(Enum):
|
|
825
|
+
inchi = "inchi"
|
|
826
|
+
|
|
827
|
+
|
|
828
|
+
class InChIRepresentationSchema16(BaseModel):
|
|
829
|
+
name: Literal["5#-datamodel-code-generator-#-object-#-special-#"]
|
|
830
|
+
value: str
|
|
831
|
+
|
|
832
|
+
|
|
833
|
+
class Name179(Enum):
|
|
834
|
+
inchi_key = "inchi_key"
|
|
835
|
+
|
|
836
|
+
|
|
837
|
+
class InChIKeyRepresentationSchema16(BaseModel):
|
|
838
|
+
name: Literal["6#-datamodel-code-generator-#-object-#-special-#"]
|
|
839
|
+
value: str
|
|
840
|
+
|
|
841
|
+
|
|
842
|
+
class DerivedPropertiesSchema16(
|
|
843
|
+
RootModel[
|
|
844
|
+
Union[
|
|
845
|
+
VolumeSchema15,
|
|
846
|
+
DensitySchema16,
|
|
847
|
+
SymmetrySchema15,
|
|
848
|
+
ElementalRatio16,
|
|
849
|
+
PNorm16,
|
|
850
|
+
InChIRepresentationSchema16,
|
|
851
|
+
InChIKeyRepresentationSchema16,
|
|
852
|
+
]
|
|
853
|
+
]
|
|
854
|
+
):
|
|
855
|
+
root: Union[
|
|
856
|
+
VolumeSchema15,
|
|
857
|
+
DensitySchema16,
|
|
858
|
+
SymmetrySchema15,
|
|
859
|
+
ElementalRatio16,
|
|
860
|
+
PNorm16,
|
|
861
|
+
InChIRepresentationSchema16,
|
|
862
|
+
InChIKeyRepresentationSchema16,
|
|
863
|
+
] = Field(..., discriminator="name")
|
|
864
|
+
|
|
865
|
+
|
|
866
|
+
class Name180(Enum):
|
|
867
|
+
default = "default"
|
|
868
|
+
atomsTooClose = "atomsTooClose"
|
|
869
|
+
atomsOverlap = "atomsOverlap"
|
|
870
|
+
|
|
871
|
+
|
|
872
|
+
class MaterialConsistencyCheckSchema15(BaseModel):
|
|
873
|
+
name: Name180
|
|
874
|
+
"""
|
|
875
|
+
Name of the consistency check that is performed, which is listed in an enum.
|
|
876
|
+
"""
|
|
877
|
+
key: str
|
|
878
|
+
"""
|
|
879
|
+
Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
|
|
880
|
+
"""
|
|
881
|
+
severity: Severity
|
|
882
|
+
"""
|
|
883
|
+
Severity level of the problem, which is used in UI to differentiate.
|
|
884
|
+
"""
|
|
885
|
+
message: str
|
|
886
|
+
"""
|
|
887
|
+
Message generated by the consistency check describing the problem.
|
|
888
|
+
"""
|
|
889
|
+
|
|
890
|
+
|
|
891
|
+
class CrystalSchema12(BaseModel):
|
|
892
|
+
formula: Optional[str] = None
|
|
893
|
+
"""
|
|
894
|
+
reduced chemical formula
|
|
895
|
+
"""
|
|
896
|
+
unitCellFormula: Optional[str] = None
|
|
897
|
+
"""
|
|
898
|
+
chemical formula based on the number of atoms of each element in the supercell
|
|
899
|
+
"""
|
|
900
|
+
basis: BasisSchema15 = Field(..., title="basis schema")
|
|
901
|
+
lattice: LatticeSchema15 = Field(..., title="lattice schema")
|
|
902
|
+
derivedProperties: Optional[List[DerivedPropertiesSchema16]] = Field(None, title="derived properties schema")
|
|
903
|
+
external: Optional[DatabaseSourceSchema] = Field(None, title="database source schema")
|
|
904
|
+
"""
|
|
905
|
+
information about a database source
|
|
906
|
+
"""
|
|
907
|
+
src: Optional[FileSourceSchema] = Field(None, title="file source schema")
|
|
908
|
+
"""
|
|
909
|
+
file source with the information inside
|
|
910
|
+
"""
|
|
911
|
+
scaledHash: Optional[str] = None
|
|
912
|
+
"""
|
|
913
|
+
Hash string for a scaled structure with lattice vector a set to 1 (eg. for materials under pressure).
|
|
914
|
+
"""
|
|
915
|
+
icsdId: Optional[int] = None
|
|
916
|
+
"""
|
|
917
|
+
Corresponding ICSD id of the material
|
|
918
|
+
"""
|
|
919
|
+
isNonPeriodic: Optional[bool] = None
|
|
920
|
+
"""
|
|
921
|
+
Whether to work in the finite molecular picture (usually with atomic orbital basis)
|
|
922
|
+
"""
|
|
923
|
+
consistencyChecks: Optional[List[MaterialConsistencyCheckSchema15]] = None
|
|
924
|
+
field_id: Optional[str] = Field(None, alias="_id")
|
|
925
|
+
"""
|
|
926
|
+
entity identity
|
|
927
|
+
"""
|
|
928
|
+
slug: Optional[str] = None
|
|
929
|
+
"""
|
|
930
|
+
entity slug
|
|
931
|
+
"""
|
|
932
|
+
systemName: Optional[str] = None
|
|
933
|
+
schemaVersion: Optional[str] = "2022.8.16"
|
|
934
|
+
"""
|
|
935
|
+
entity's schema version. Used to distinct between different schemas.
|
|
936
|
+
"""
|
|
937
|
+
name: Optional[str] = None
|
|
938
|
+
"""
|
|
939
|
+
entity name
|
|
940
|
+
"""
|
|
941
|
+
isDefault: Optional[bool] = False
|
|
942
|
+
"""
|
|
943
|
+
Identifies that entity is defaultable
|
|
944
|
+
"""
|
|
945
|
+
metadata: Optional[Dict[str, Any]] = None
|
|
946
|
+
|
|
947
|
+
|
|
539
948
|
class VacuumConfigurationSchema(BaseModel):
|
|
540
949
|
direction: AxisEnum = Field(..., title="Axis Enum")
|
|
541
950
|
"""
|
|
@@ -545,6 +954,10 @@ class VacuumConfigurationSchema(BaseModel):
|
|
|
545
954
|
"""
|
|
546
955
|
Size of the vacuum slab in angstroms
|
|
547
956
|
"""
|
|
957
|
+
crystal: CrystalSchema12 = Field(..., title="Crystal Schema")
|
|
958
|
+
"""
|
|
959
|
+
A crystal structure, referencing the base material schema
|
|
960
|
+
"""
|
|
548
961
|
|
|
549
962
|
|
|
550
963
|
class StackSchema(BaseModel):
|