mat3ra-esse 2025.6.14.post0__py3-none-any.whl → 2025.7.1.post0__py3-none-any.whl

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  1. {mat3ra_esse-2025.6.14.post0.dist-info → mat3ra_esse-2025.7.1.post0.dist-info}/METADATA +2 -2
  2. {mat3ra_esse-2025.6.14.post0.dist-info → mat3ra_esse-2025.7.1.post0.dist-info}/RECORD +5 -118
  3. mat3ra/esse/models/coordinates_shape_enum.py +0 -15
  4. mat3ra/esse/models/core/abstract/2d_data.py +0 -17
  5. mat3ra/esse/models/core/abstract/2d_plot.py +0 -34
  6. mat3ra/esse/models/core/abstract/3d_grid.py +0 -14
  7. mat3ra/esse/models/core/abstract/3d_tensor.py +0 -19
  8. mat3ra/esse/models/core/abstract/3d_vector_basis.py +0 -15
  9. mat3ra/esse/models/core/abstract/_3d_tensor.py +0 -19
  10. mat3ra/esse/models/core/abstract/_3d_vector_basis.py +0 -15
  11. mat3ra/esse/models/core/abstract/point.py +0 -13
  12. mat3ra/esse/models/core/abstract/vector.py +0 -13
  13. mat3ra/esse/models/core/primitive/1d_data_series.py +0 -13
  14. mat3ra/esse/models/core/primitive/3d_lattice.py +0 -34
  15. mat3ra/esse/models/core/primitive/_3d_lattice.py +0 -34
  16. mat3ra/esse/models/core/reusable/accuracy_level.py +0 -27
  17. mat3ra/esse/models/core/reusable/atomic_strings.py +0 -24
  18. mat3ra/esse/models/core/reusable/coordinate_conditions/cylinder.py +0 -26
  19. mat3ra/esse/models/core/reusable/coordinate_conditions/plane.py +0 -24
  20. mat3ra/esse/models/core/reusable/coordinate_conditions/sphere.py +0 -24
  21. mat3ra/esse/models/core/reusable/coordinate_conditions/triangular_prism.py +0 -27
  22. mat3ra/esse/models/core/reusable/energy_accuracy_levels/__init__.py +0 -3
  23. mat3ra/esse/models/core/reusable/energy_accuracy_levels.py +0 -31
  24. mat3ra/esse/models/enums/__init__.py +0 -3
  25. mat3ra/esse/models/enums/chemical_elements.py +0 -13
  26. mat3ra/esse/models/material/builders/base/__init__.py +0 -3
  27. mat3ra/esse/models/material/builders/base/selector_parameters.py +0 -16
  28. mat3ra/esse/models/material/builders/single_material/two_dimensional/slab/__init__.py +0 -3
  29. mat3ra/esse/models/material/builders/single_material/two_dimensional/slab/builder_parameters.py +0 -28
  30. mat3ra/esse/models/material/builders/single_material/two_dimensional/slab/selector_parameters.py +0 -151
  31. mat3ra/esse/models/material/reusable/__init__.py +0 -3
  32. mat3ra/esse/models/material/reusable/coordinate_conditions/__init__.py +0 -3
  33. mat3ra/esse/models/material/reusable/coordinate_conditions/base.py +0 -21
  34. mat3ra/esse/models/material/reusable/coordinate_conditions/box.py +0 -24
  35. mat3ra/esse/models/material/reusable/coordinate_conditions/cylinder.py +0 -26
  36. mat3ra/esse/models/material/reusable/coordinate_conditions/plane.py +0 -24
  37. mat3ra/esse/models/material/reusable/coordinate_conditions/sphere.py +0 -24
  38. mat3ra/esse/models/material/reusable/coordinate_conditions/triangular_prism.py +0 -27
  39. mat3ra/esse/models/material/reusable/repetitions.py +0 -25
  40. mat3ra/esse/models/material/reusable/slab/__init__.py +0 -3
  41. mat3ra/esse/models/material/reusable/slab/enums/__init__.py +0 -3
  42. mat3ra/esse/models/material/reusable/slab/enums/exposed_face.py +0 -13
  43. mat3ra/esse/models/material/reusable/slab/enums.py +0 -13
  44. mat3ra/esse/models/material/reusable/slab/miller_indices.py +0 -16
  45. mat3ra/esse/models/material/reusable/slab/number_of_layers.py +0 -16
  46. mat3ra/esse/models/material/reusable/slab/slab_configuration_with_termination.py +0 -589
  47. mat3ra/esse/models/material/reusable/slab/slab_with_termination.py +0 -593
  48. mat3ra/esse/models/material/reusable/slab/termination.py +0 -144
  49. mat3ra/esse/models/material/reusable/slab/two_slabs_stack.py +0 -618
  50. mat3ra/esse/models/material/reusable/slab/vacuum.py +0 -16
  51. mat3ra/esse/models/material/reusable/slab_configuration_with_termination.py +0 -712
  52. mat3ra/esse/models/material/reusable/stack/__init__.py +0 -3
  53. mat3ra/esse/models/material/reusable/stack/slab_configuration_with_termination.py +0 -593
  54. mat3ra/esse/models/material/reusable/stack/slab_in_stack.py +0 -720
  55. mat3ra/esse/models/material/reusable/stack/stack_of_slabs.py +0 -737
  56. mat3ra/esse/models/material/reusable/stack/stack_of_two_slabs.py +0 -737
  57. mat3ra/esse/models/material/reusable/supercell/__init__.py +0 -3
  58. mat3ra/esse/models/material/reusable/supercell/supercell_matrix_2d.py +0 -25
  59. mat3ra/esse/models/material/reusable/supercell/supercell_matrix_3d.py +0 -27
  60. mat3ra/esse/models/material/reusable/supercell_matrix_2d.py +0 -25
  61. mat3ra/esse/models/material/reusable/supercell_matrix_3d.py +0 -27
  62. mat3ra/esse/models/materials_category/defects/__init__.py +0 -3
  63. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/adatom/__init__.py +0 -3
  64. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/adatom/configuration.py +0 -672
  65. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/layered/__init__.py +0 -3
  66. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/layered/configuration.py +0 -549
  67. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/point/__init__.py +0 -3
  68. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/point/configuration.py +0 -550
  69. mat3ra/esse/models/materials_category/defects/configuration.py +0 -545
  70. mat3ra/esse/models/materials_category/defects/enums/__init__.py +0 -3
  71. mat3ra/esse/models/materials_category/defects/enums/point_defect_type.py +0 -13
  72. mat3ra/esse/models/materials_category/defects/one_dimensional/terrace/__init__.py +0 -3
  73. mat3ra/esse/models/materials_category/defects/one_dimensional/terrace/configuration.py +0 -563
  74. mat3ra/esse/models/materials_category/defects/two_dimensional/grain_boundary_plane/__init__.py +0 -3
  75. mat3ra/esse/models/materials_category/defects/two_dimensional/grain_boundary_plane/configuration.py +0 -1200
  76. mat3ra/esse/models/materials_category/defects/two_dimensional/island/__init__.py +0 -3
  77. mat3ra/esse/models/materials_category/defects/two_dimensional/island/condition_json.py +0 -28
  78. mat3ra/esse/models/materials_category/defects/two_dimensional/island/configuration.py +0 -564
  79. mat3ra/esse/models/materials_category/defects/zero_dimensional/complex/pair/__init__.py +0 -3
  80. mat3ra/esse/models/materials_category/defects/zero_dimensional/complex/pair/configuration.py +0 -1538
  81. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/__init__.py +0 -3
  82. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/configuration.py +0 -672
  83. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/interstitial/__init__.py +0 -3
  84. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/interstitial/configuration.py +0 -672
  85. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/substitution/__init__.py +0 -3
  86. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/substitution/configuration.py +0 -672
  87. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/vacancy/__init__.py +0 -3
  88. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/vacancy/configuration.py +0 -672
  89. mat3ra/esse/models/materials_category/multi_material/interfaces/__init__.py +0 -3
  90. mat3ra/esse/models/materials_category/multi_material/interfaces/configuration.py +0 -737
  91. mat3ra/esse/models/materials_category/single_material/two_dimensional/slab/__init__.py +0 -3
  92. mat3ra/esse/models/materials_category/single_material/two_dimensional/slab/configuration.py +0 -567
  93. mat3ra/esse/models/methods_directory/physical/psp/file/__init__.py +0 -129
  94. mat3ra/esse/models/methods_directory/physical/psp/file_data_item/__init__.py +0 -111
  95. mat3ra/esse/models/properties_directory/structural/lattice/lattice_bravais.py +0 -74
  96. mat3ra/esse/models/property/base/__init__.py +0 -200
  97. mat3ra/esse/models/property/meta/__init__.py +0 -200
  98. mat3ra/esse/models/property/raw/__init__.py +0 -200
  99. mat3ra/esse/models/property/source/__init__.py +0 -150
  100. mat3ra/esse/models/third_party/db/nist_jarvis/2024_3.13/__init__.py +0 -3
  101. mat3ra/esse/models/third_party/db/nist_jarvis/2024_3.13/atoms.py +0 -41
  102. mat3ra/esse/models/third_party/db/nist_jarvis/2024_3.13/db_entry.py +0 -55
  103. mat3ra/esse/models/third_party/file/applications/espresso/7.2/__init__.py +0 -3
  104. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/__init__.py +0 -3
  105. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/atomic_positions.py +0 -51
  106. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/atomic_species.py +0 -34
  107. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/cell.py +0 -111
  108. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/cell_parameters.py +0 -36
  109. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/control.py +0 -169
  110. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/electrons.py +0 -139
  111. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/hubbard.py +0 -194
  112. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/ions.py +0 -422
  113. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/k_points.py +0 -73
  114. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/system.py +0 -841
  115. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw_x.py +0 -1990
  116. {mat3ra_esse-2025.6.14.post0.dist-info → mat3ra_esse-2025.7.1.post0.dist-info}/WHEEL +0 -0
  117. {mat3ra_esse-2025.6.14.post0.dist-info → mat3ra_esse-2025.7.1.post0.dist-info}/licenses/LICENSE.md +0 -0
  118. {mat3ra_esse-2025.6.14.post0.dist-info → mat3ra_esse-2025.7.1.post0.dist-info}/top_level.txt +0 -0
@@ -1,841 +0,0 @@
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- # generated by datamodel-codegen:
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- # filename: 3pse/file/applications/espresso/7.2/pw.x/system.json
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- # version: 0.28.5
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-
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- from __future__ import annotations
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-
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- from enum import Enum
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- from typing import List, Optional, Union
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-
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- from pydantic import BaseModel, ConfigDict, Field, RootModel, confloat, conint
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-
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-
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- class Occupations(Enum):
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- smearing = "smearing"
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- tetrahedra = "tetrahedra"
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- tetrahedra_lin = "tetrahedra_lin"
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- tetrahedra_opt = "tetrahedra_opt"
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- fixed = "fixed"
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- from_input = "from_input"
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-
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-
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- class Smearing(Enum):
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- gaussian = "gaussian"
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- gauss = "gauss"
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- methfessel_paxton = "methfessel-paxton"
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- m_p = "m-p"
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- mp = "mp"
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- marzari_vanderbilt = "marzari-vanderbilt"
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- cold = "cold"
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- m_v = "m-v"
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- mv = "mv"
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- fermi_dirac = "fermi-dirac"
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- f_d = "f-d"
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- fd = "fd"
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-
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-
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- class PolType(Enum):
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- e = "e"
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- h = "h"
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-
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-
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- class ExxdivTreatment(Enum):
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- gygi_baldereschi = "gygi-baldereschi"
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- vcut_spherical = "vcut_spherical"
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- vcut_ws = "vcut_ws"
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- none = "none"
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-
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-
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- class HubbardOccItem(RootModel[conint(ge=1)]):
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- root: conint(ge=1)
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-
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-
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- class HubbardOccItem5(RootModel[conint(ge=1, le=3)]):
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- root: conint(ge=1, le=3)
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-
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-
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- class ConstrainedMagnetization(Enum):
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- none = "none"
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- total = "total"
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- atomic = "atomic"
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- total_direction = "total direction"
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- atomic_direction = "atomic direction"
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-
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-
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- class AssumeIsolated(Enum):
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- none = "none"
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- makov_payne = "makov-payne"
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- m_p = "m-p"
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- mp = "mp"
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- martyna_tuckerman = "martyna-tuckerman"
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- m_t = "m-t"
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- mt = "mt"
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- esm = "esm"
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- field_2D = "2D"
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-
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-
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- class EsmBc(Enum):
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- pbc = "pbc"
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- bc1 = "bc1"
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- bc2 = "bc2"
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- bc3 = "bc3"
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-
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-
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- class VdwCorr(Enum):
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- none = "none"
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- grimme_d2 = "grimme-d2"
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- Grimme_D2 = "Grimme-D2"
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- DFT_D = "DFT-D"
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- dft_d = "dft-d"
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- grimme_d3 = "grimme-d3"
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- Grimme_D3 = "Grimme-D3"
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- DFT_D3 = "DFT-D3"
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- dft_d3 = "dft-d3"
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- TS = "TS"
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- ts = "ts"
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- ts_vdw = "ts-vdw"
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- ts_vdW = "ts-vdW"
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- tkatchenko_scheffler = "tkatchenko-scheffler"
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- MBD = "MBD"
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- mbd = "mbd"
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- many_body_dispersion = "many-body-dispersion"
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- mbd_vdw = "mbd_vdw"
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- XDM = "XDM"
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- xdm = "xdm"
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-
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-
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- class SystemSchema(BaseModel):
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- model_config = ConfigDict(
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- extra="forbid",
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- )
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- ibrav: int
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- nat: int
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- """
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- number of atoms in the unit cell (ALL atoms, except if space_group is set, in which case, INEQUIVALENT atoms)
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- """
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- ntyp: int
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- """
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- number of types of atoms in the unit cell
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- """
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- nbnd: Optional[int] = None
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- """
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- Default: for an insulator, nbnd = number of valence bands (nbnd = # of electrons /2); for a metal, 20% more (minimum 4 more)
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- """
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- nbnd_cond: Optional[int] = None
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- """
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- Default: nbnd_cond = nbnd - # of electrons / 2 in the collinear case; nbnd_cond = nbnd - # of electrons in the noncollinear case.
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- """
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- tot_charge: Optional[float] = 0
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- starting_charge: Optional[float] = 0
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- """
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- starting charge on atomic type 'i', to create starting potential with startingpot = 'atomic'.
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- """
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- tot_magnetization: Optional[float] = -10000
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- """
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- Total majority spin charge - minority spin charge. Used to impose a specific total electronic magnetization. If unspecified then tot_magnetization variable is ignored and the amount of electronic magnetization is determined during the self-consistent cycle.
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- """
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- starting_magnetization: Optional[List[confloat(ge=-1.0, le=1.0)]] = None
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- ecutwfc: float
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- """
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- kinetic energy cutoff (Ry) for wavefunctions
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- """
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- ecutrho: Optional[float] = None
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- """
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- Kinetic energy cutoff (Ry) for charge density and potential For norm-conserving pseudopotential you should stick to the default value, you can reduce it by a little but it will introduce noise especially on forces and stress. Default: 4 * ecutwfc
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- """
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- ecutfock: Optional[float] = None
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- """
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- Kinetic energy cutoff (Ry) for the exact exchange operator in EXX type calculations. By default this is the same as ecutrho but in some EXX calculations, a significant speed-up can be obtained by reducing ecutfock, at the expense of some loss in accuracy. Must be .gt. ecutwfc. Not implemented for stress calculation and for US-PP and PAW pseudopotentials.
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- """
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- nr1: Optional[int] = None
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- """
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- Three-dimensional FFT mesh (hard grid) for charge density (and scf potential). If not specified the grid is calculated based on the cutoff for charge density (see also ecutrho)
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- """
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- nr2: Optional[int] = None
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- """
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- Three-dimensional FFT mesh (hard grid) for charge density (and scf potential). If not specified the grid is calculated based on the cutoff for charge density (see also ecutrho)
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- """
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- nr3: Optional[int] = None
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- """
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- Three-dimensional FFT mesh (hard grid) for charge density (and scf potential). If not specified the grid is calculated based on the cutoff for charge density (see also ecutrho)
161
- """
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- nr1s: Optional[int] = None
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- """
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- Three-dimensional mesh for wavefunction FFT and for the smooth part of charge density ( smooth grid ). Coincides with nr1, nr2, nr3 if ecutrho = 4 * ecutwfc ( default )
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- """
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- nr2s: Optional[int] = None
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- """
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- Three-dimensional mesh for wavefunction FFT and for the smooth part of charge density ( smooth grid ). Coincides with nr1, nr2, nr3 if ecutrho = 4 * ecutwfc ( default )
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- """
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- nr3s: Optional[int] = None
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- """
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- Three-dimensional mesh for wavefunction FFT and for the smooth part of charge density ( smooth grid ). Coincides with nr1, nr2, nr3 if ecutrho = 4 * ecutwfc ( default )
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- """
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- nosym: Optional[bool] = False
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- nosym_evc: Optional[bool] = False
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- noinv: Optional[bool] = False
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- """
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- if (.TRUE.) disable the usage of k => -k symmetry (time reversal) in k-point generation
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- """
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- no_t_rev: Optional[bool] = False
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- """
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- if (.TRUE.) disable the usage of magnetic symmetry operations that consist in a rotation + time reversal.
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- """
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- force_symmorphic: Optional[bool] = False
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- """
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- if (.TRUE.) force the symmetry group to be symmorphic by disabling symmetry operations having an associated fractionary translation
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- """
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- use_all_frac: Optional[bool] = False
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- occupations: Optional[Occupations] = None
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- one_atom_occupations: Optional[bool] = False
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- starting_spin_angle: Optional[bool] = False
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- degauss_cond: Optional[float] = 0
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- """
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- value of the gaussian spreading (Ry) for brillouin-zone integration in the conduction manifold in a two-chemical potential calculation (twochem=.true.).
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- """
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- nelec_cond: Optional[float] = 0
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- """
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- Number of electrons placed in the conduction manifold in a two-chemical potential calculation (twochem=.true.). Of the total # of electrons nelec, nelec-nelec_cond will occupy the valence manifold and nelec_cond will be constrained in the conduction manifold.
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- """
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- degauss: Optional[float] = 0
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- """
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- value of the gaussian spreading (Ry) for brillouin-zone integration in metals.
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- """
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- smearing: Optional[Smearing] = "gaussian"
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- nspin: Optional[int] = 1
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- sic_gamma: Optional[float] = 0
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- """
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- Strength of the gammaDFT potential.
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- """
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- pol_type: Optional[PolType] = None
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- """
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- Type of polaron in gammaDFT.
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- """
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- sic_energy: Optional[bool] = False
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- """
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- Enable the calculation of the total energy in gammaDFT. When .true., a preliminary calculation is performed to calculate the electron density in the absence of the polaron. When .false., the total energy printed in output should not be considered. For structural relaxations, it is recommended to use .false. to avoid doubling the computational cost.
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- """
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- sci_vb: Optional[float] = 0
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- """
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- Valence band shift (in eV) through self-consistent scissor operator. When performing gammaDFT calculations of polarons, the polaron level is not shifted.
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- """
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- sci_cb: Optional[float] = 0
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- """
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- Conduction band band shift (in eV) through self-consistent scissor operator. When performing gammaDFT calculations of polarons, the polaron level is not shifted.
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- """
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- noncolin: Optional[bool] = False
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- """
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- if .true. the program will perform a noncollinear calculation.
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- """
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- ecfixed: Optional[float] = 0
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- qcutz: Optional[float] = 0
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- q2sigma: Optional[float] = 0.1
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- input_dft: Optional[str] = None
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- """
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- Exchange-correlation functional: eg 'PBE', 'BLYP' etc See Modules/funct.f90 for allowed values. Overrides the value read from pseudopotential files. Use with care and if you know what you are doing!
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- """
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- ace: Optional[bool] = True
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- """
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- Use Adaptively Compressed Exchange operator as in Lin Lin, J. Chem. Theory Comput. 2016, 12, 2242--2249, doi:10.1021/acs.jctc.6b00092
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- """
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- exx_fraction: Optional[float] = None
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- """
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- Fraction of EXX for hybrid functional calculations. In the case of input_dft='PBE0', the default value is 0.25, while for input_dft='B3LYP' the exx_fraction default value is 0.20.
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- """
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- screening_parameter: Optional[float] = 0.106
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- """
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- screening_parameter for HSE like hybrid functionals.
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- """
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- exxdiv_treatment: Optional[ExxdivTreatment] = "gygi-baldereschi"
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- x_gamma_extrapolation: Optional[bool] = True
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- """
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- Specific for EXX. If .true., extrapolate the G=0 term of the potential
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- """
254
- ecutvcut: Optional[float] = None
255
- """
256
- Reciprocal space cutoff for correcting Coulomb potential divergencies at small q vectors.
257
- """
258
- nqx1: Optional[int] = 0
259
- """
260
- Three-dimensional mesh for q (k1-k2) sampling of the Fock operator (EXX). Can be smaller than the number of k-points.
261
- """
262
- nqx2: Optional[int] = None
263
- """
264
- Three-dimensional mesh for q (k1-k2) sampling of the Fock operator (EXX). Can be smaller than the number of k-points.
265
- """
266
- nqx3: Optional[int] = None
267
- """
268
- Three-dimensional mesh for q (k1-k2) sampling of the Fock operator (EXX). Can be smaller than the number of k-points.
269
- """
270
- localization_thr: Optional[float] = 0
271
- """
272
- Overlap threshold over which the exchange integral over a pair of localized orbitals is included in the evaluation of EXX operator. Any value greater than 0.0 triggers the SCDM localization and the evaluation on EXX using the localized orbitals. Very small value of the threshold should yield the same result as the default EXX evaluation
273
- """
274
- Hubbard_occ: Optional[List[List[Union[HubbardOccItem, HubbardOccItem5, float]]]] = None
275
- Hubbard_alpha: Optional[List[float]] = None
276
- Hubbard_beta: Optional[List[float]] = None
277
- starting_ns_eigenvalue: Optional[List[List[List[float]]]] = None
278
- dmft: Optional[bool] = False
279
- """
280
- If true, nscf calculation will exit in restart mode, scf calculation will restart from there if DMFT updates are provided as hdf5 archive. Scf calculation should be used only with electron_maxstep = 1.
281
- """
282
- dmft_prefix: Optional[str] = None
283
- """
284
- prepended to hdf5 archive: dmft_prefix.h5
285
- """
286
- ensemble_energies: Optional[bool] = False
287
- """
288
- If ensemble_energies = .true., an ensemble of xc energies is calculated non-selfconsistently for perturbed exchange-enhancement factors and LDA vs. PBE correlation ratios after each converged electronic ground state calculation.
289
- """
290
- edir: Optional[int] = None
291
- """
292
- The direction of the electric field or dipole correction is parallel to the bg(:,edir) reciprocal lattice vector, so the potential is constant in planes defined by FFT grid points; edir = 1, 2 or 3. Used only if tefield is .TRUE.
293
- """
294
- emaxpos: Optional[float] = 0.5
295
- """
296
- Position of the maximum of the saw-like potential along crystal axis edir, within the unit cell (see below), 0 < emaxpos < 1 Used only if tefield is .TRUE.
297
- """
298
- eopreg: Optional[float] = 0.1
299
- """
300
- Zone in the unit cell where the saw-like potential decreases. ( see below, 0 < eopreg < 1 ). Used only if tefield is .TRUE.
301
- """
302
- eamp: Optional[float] = 0.001
303
- angle1: Optional[List[float]] = Field(None, max_length=1, min_length=1)
304
- """
305
- The angle expressed in degrees between the initial magnetization and the z-axis. For noncollinear calculations only; index i runs over the atom types.
306
- """
307
- angle2: Optional[List[float]] = Field(None, max_length=1, min_length=1)
308
- """
309
- The angle expressed in degrees between the projection of the initial magnetization on x-y plane and the x-axis. For noncollinear calculations only.
310
- """
311
- lforcet: Optional[bool] = None
312
- """
313
- When starting a non collinear calculation using an existing density file from a collinear lsda calculation assumes previous density points in z direction and rotates it in the direction described by angle1 and angle2 variables for atomic type 1
314
- """
315
- constrained_magnetization: Optional[ConstrainedMagnetization] = "none"
316
- """
317
- Used to perform constrained calculations in magnetic systems.
318
- """
319
- fixed_magnetization: Optional[List[float]] = Field(None, max_length=3, min_length=3)
320
- lambda_: Optional[float] = Field(1, alias="lambda")
321
- """
322
- parameter used for constrained_magnetization calculations N.B.: if the scf calculation does not converge, try to reduce lambda to obtain convergence, then restart the run with a larger lambda
323
- """
324
- report: Optional[int] = -1
325
- """
326
- determines when atomic magnetic moments are printed on output
327
- """
328
- lspinorb: Optional[bool] = None
329
- """
330
- if .TRUE. the noncollinear code can use a pseudopotential with spin-orbit.
331
- """
332
- assume_isolated: Optional[AssumeIsolated] = "none"
333
- """
334
- Used to perform calculation assuming the system to be isolated (a molecule or a cluster in a 3D supercell)
335
- """
336
- esm_bc: Optional[EsmBc] = "pbc"
337
- """
338
- If assume_isolated = 'esm', determines the boundary conditions used for either side of the slab.
339
- """
340
- esm_w: Optional[float] = 0
341
- """
342
- If assume_isolated = 'esm', determines the position offset [in a.u.] of the start of the effective screening region, measured relative to the cell edge. (ESM region begins at z = +/- [L_z/2 + esm_w] ).
343
- """
344
- esm_efield: Optional[float] = 0
345
- """
346
- If assume_isolated = 'esm' and esm_bc = 'bc2', gives the magnitude of the electric field [Ry/a.u.] to be applied between semi-infinite ESM electrodes.
347
- """
348
- esm_nfit: Optional[int] = 4
349
- """
350
- If assume_isolated = 'esm', gives the number of z-grid points for the polynomial fit along the cell edge.
351
- """
352
- lgcscf: Optional[bool] = False
353
- """
354
- If .TRUE. perform a constant bias potential (constant-mu) calculation with Grand-Canonical SCF.
355
- """
356
- gcscf_mu: Optional[float] = None
357
- """
358
- The target Fermi energy (eV) of GC-SCF. One can start with appropriate total charge of the system by giving tot_charge
359
- """
360
- gcscf_conv_thr: Optional[float] = 0.01
361
- """
362
- Convergence threshold of Fermi energy (eV) for GC-SCF.
363
- """
364
- gcscf_beta: Optional[float] = 0.05
365
- """
366
- Mixing factor for GC-SCF. Larger values are recommended, if systems with small DOS on Fermi surface as graphite.
367
- """
368
- vdw_corr: Optional[VdwCorr] = "none"
369
- """
370
- Type of Van der Waals correction
371
- """
372
- london: Optional[bool] = False
373
- """
374
- OBSOLESCENT, same as vdw_corr='DFT-D'
375
- """
376
- london_s6: Optional[float] = 0.75
377
- """
378
- global scaling parameter for DFT-D. Default is good for PBE.
379
- """
380
- london_c6: Optional[float] = None
381
- """
382
- atomic C6 coefficient of each atom type
383
- """
384
- london_rvdw: Optional[float] = None
385
- """
386
- atomic vdw radii of each atom type
387
- """
388
- london_rcut: Optional[float] = 200
389
- """
390
- cutoff radius (a.u.) for dispersion interactions
391
- """
392
- dftd3_version: Optional[conint(ge=2, le=6)] = 3
393
- """
394
- Version of Grimme implementation of Grimme-D3
395
- """
396
- dftd3_threebody: Optional[bool] = True
397
- """
398
- Turn three-body terms in Grimme-D3 on. If .false. two-body contributions only are computed, using two-body parameters of Grimme-D3. If dftd3_version=2, three-body contribution is always disabled.
399
- """
400
- ts_vdw_econv_thr: Optional[float] = 1e-06
401
- """
402
- Optional: controls the convergence of the vdW energy (and forces). The default value is a safe choice, likely too safe, but you do not gain much in increasing it
403
- """
404
- ts_vdw_isolated: Optional[bool] = False
405
- """
406
- Optional: set it to .TRUE. when computing the Tkatchenko-Scheffler vdW energy or the Many-Body dispersion (MBD) energy for an isolated (non-periodic) system.
407
- """
408
- xdm: Optional[bool] = False
409
- """
410
- OBSOLESCENT, same as vdw_corr='xdm'
411
- """
412
- xdm_a1: Optional[float] = 0.6836
413
- """
414
- Damping function parameter a1 (adimensional)
415
- """
416
- xdm_a2: Optional[float] = 1.5045
417
- """
418
- Damping function parameter a2 (angstrom)
419
- """
420
- space_group: Optional[int] = 0
421
- """
422
- The number of the space group of the crystal, as given in the International Tables of Crystallography A (ITA)
423
- """
424
- uniqueb: Optional[bool] = False
425
- """
426
- Used only for monoclinic lattices
427
- """
428
- origin_choice: Optional[int] = 1
429
- """
430
- Used only for space groups that in the ITA allow the use of two different origins
431
- """
432
- rhombohedral: Optional[bool] = True
433
- """
434
- Used only for rhombohedral space groups.
435
- """
436
- zgate: Optional[float] = 0.5
437
- """
438
- used only if gate = .TRUE.
439
- """
440
- relaxz: Optional[bool] = False
441
- """
442
- used only if gate = .TRUE.
443
- """
444
- block: Optional[bool] = False
445
- """
446
- used only if gate = .TRUE.
447
- """
448
- block_1: Optional[float] = 0.45
449
- """
450
- used only if gate = .TRUE. and block = .TRUE.
451
- """
452
- block_2: Optional[float] = 0.55
453
- """
454
- used only if gate = .TRUE. and block = .TRUE.
455
- """
456
- block_height: Optional[float] = 0.1
457
- """
458
- used only if gate = .TRUE. and block = .TRUE.
459
- """
460
- nextffield: Optional[int] = 0
461
- """
462
- Number of activated external ionic force fields.
463
- """
464
- celldm: Optional[List[float]] = Field(None, max_length=6, min_length=6)
465
-
466
-
467
- class HubbardOccItem6(RootModel[conint(ge=1)]):
468
- root: conint(ge=1)
469
-
470
-
471
- class HubbardOccItem7(RootModel[conint(ge=1, le=3)]):
472
- root: conint(ge=1, le=3)
473
-
474
-
475
- class SystemSchema3(BaseModel):
476
- model_config = ConfigDict(
477
- extra="forbid",
478
- )
479
- ibrav: int
480
- nat: int
481
- """
482
- number of atoms in the unit cell (ALL atoms, except if space_group is set, in which case, INEQUIVALENT atoms)
483
- """
484
- ntyp: int
485
- """
486
- number of types of atoms in the unit cell
487
- """
488
- nbnd: Optional[int] = None
489
- """
490
- Default: for an insulator, nbnd = number of valence bands (nbnd = # of electrons /2); for a metal, 20% more (minimum 4 more)
491
- """
492
- nbnd_cond: Optional[int] = None
493
- """
494
- Default: nbnd_cond = nbnd - # of electrons / 2 in the collinear case; nbnd_cond = nbnd - # of electrons in the noncollinear case.
495
- """
496
- tot_charge: Optional[float] = 0
497
- starting_charge: Optional[float] = 0
498
- """
499
- starting charge on atomic type 'i', to create starting potential with startingpot = 'atomic'.
500
- """
501
- tot_magnetization: Optional[float] = -10000
502
- """
503
- Total majority spin charge - minority spin charge. Used to impose a specific total electronic magnetization. If unspecified then tot_magnetization variable is ignored and the amount of electronic magnetization is determined during the self-consistent cycle.
504
- """
505
- starting_magnetization: Optional[List[confloat(ge=-1.0, le=1.0)]] = None
506
- ecutwfc: float
507
- """
508
- kinetic energy cutoff (Ry) for wavefunctions
509
- """
510
- ecutrho: Optional[float] = None
511
- """
512
- Kinetic energy cutoff (Ry) for charge density and potential For norm-conserving pseudopotential you should stick to the default value, you can reduce it by a little but it will introduce noise especially on forces and stress. Default: 4 * ecutwfc
513
- """
514
- ecutfock: Optional[float] = None
515
- """
516
- Kinetic energy cutoff (Ry) for the exact exchange operator in EXX type calculations. By default this is the same as ecutrho but in some EXX calculations, a significant speed-up can be obtained by reducing ecutfock, at the expense of some loss in accuracy. Must be .gt. ecutwfc. Not implemented for stress calculation and for US-PP and PAW pseudopotentials.
517
- """
518
- nr1: Optional[int] = None
519
- """
520
- Three-dimensional FFT mesh (hard grid) for charge density (and scf potential). If not specified the grid is calculated based on the cutoff for charge density (see also ecutrho)
521
- """
522
- nr2: Optional[int] = None
523
- """
524
- Three-dimensional FFT mesh (hard grid) for charge density (and scf potential). If not specified the grid is calculated based on the cutoff for charge density (see also ecutrho)
525
- """
526
- nr3: Optional[int] = None
527
- """
528
- Three-dimensional FFT mesh (hard grid) for charge density (and scf potential). If not specified the grid is calculated based on the cutoff for charge density (see also ecutrho)
529
- """
530
- nr1s: Optional[int] = None
531
- """
532
- Three-dimensional mesh for wavefunction FFT and for the smooth part of charge density ( smooth grid ). Coincides with nr1, nr2, nr3 if ecutrho = 4 * ecutwfc ( default )
533
- """
534
- nr2s: Optional[int] = None
535
- """
536
- Three-dimensional mesh for wavefunction FFT and for the smooth part of charge density ( smooth grid ). Coincides with nr1, nr2, nr3 if ecutrho = 4 * ecutwfc ( default )
537
- """
538
- nr3s: Optional[int] = None
539
- """
540
- Three-dimensional mesh for wavefunction FFT and for the smooth part of charge density ( smooth grid ). Coincides with nr1, nr2, nr3 if ecutrho = 4 * ecutwfc ( default )
541
- """
542
- nosym: Optional[bool] = False
543
- nosym_evc: Optional[bool] = False
544
- noinv: Optional[bool] = False
545
- """
546
- if (.TRUE.) disable the usage of k => -k symmetry (time reversal) in k-point generation
547
- """
548
- no_t_rev: Optional[bool] = False
549
- """
550
- if (.TRUE.) disable the usage of magnetic symmetry operations that consist in a rotation + time reversal.
551
- """
552
- force_symmorphic: Optional[bool] = False
553
- """
554
- if (.TRUE.) force the symmetry group to be symmorphic by disabling symmetry operations having an associated fractionary translation
555
- """
556
- use_all_frac: Optional[bool] = False
557
- occupations: Optional[Occupations] = None
558
- one_atom_occupations: Optional[bool] = False
559
- starting_spin_angle: Optional[bool] = False
560
- degauss_cond: Optional[float] = 0
561
- """
562
- value of the gaussian spreading (Ry) for brillouin-zone integration in the conduction manifold in a two-chemical potential calculation (twochem=.true.).
563
- """
564
- nelec_cond: Optional[float] = 0
565
- """
566
- Number of electrons placed in the conduction manifold in a two-chemical potential calculation (twochem=.true.). Of the total # of electrons nelec, nelec-nelec_cond will occupy the valence manifold and nelec_cond will be constrained in the conduction manifold.
567
- """
568
- degauss: Optional[float] = 0
569
- """
570
- value of the gaussian spreading (Ry) for brillouin-zone integration in metals.
571
- """
572
- smearing: Optional[Smearing] = "gaussian"
573
- nspin: Optional[int] = 1
574
- sic_gamma: Optional[float] = 0
575
- """
576
- Strength of the gammaDFT potential.
577
- """
578
- pol_type: Optional[PolType] = None
579
- """
580
- Type of polaron in gammaDFT.
581
- """
582
- sic_energy: Optional[bool] = False
583
- """
584
- Enable the calculation of the total energy in gammaDFT. When .true., a preliminary calculation is performed to calculate the electron density in the absence of the polaron. When .false., the total energy printed in output should not be considered. For structural relaxations, it is recommended to use .false. to avoid doubling the computational cost.
585
- """
586
- sci_vb: Optional[float] = 0
587
- """
588
- Valence band shift (in eV) through self-consistent scissor operator. When performing gammaDFT calculations of polarons, the polaron level is not shifted.
589
- """
590
- sci_cb: Optional[float] = 0
591
- """
592
- Conduction band band shift (in eV) through self-consistent scissor operator. When performing gammaDFT calculations of polarons, the polaron level is not shifted.
593
- """
594
- noncolin: Optional[bool] = False
595
- """
596
- if .true. the program will perform a noncollinear calculation.
597
- """
598
- ecfixed: Optional[float] = 0
599
- qcutz: Optional[float] = 0
600
- q2sigma: Optional[float] = 0.1
601
- input_dft: Optional[str] = None
602
- """
603
- Exchange-correlation functional: eg 'PBE', 'BLYP' etc See Modules/funct.f90 for allowed values. Overrides the value read from pseudopotential files. Use with care and if you know what you are doing!
604
- """
605
- ace: Optional[bool] = True
606
- """
607
- Use Adaptively Compressed Exchange operator as in Lin Lin, J. Chem. Theory Comput. 2016, 12, 2242--2249, doi:10.1021/acs.jctc.6b00092
608
- """
609
- exx_fraction: Optional[float] = None
610
- """
611
- Fraction of EXX for hybrid functional calculations. In the case of input_dft='PBE0', the default value is 0.25, while for input_dft='B3LYP' the exx_fraction default value is 0.20.
612
- """
613
- screening_parameter: Optional[float] = 0.106
614
- """
615
- screening_parameter for HSE like hybrid functionals.
616
- """
617
- exxdiv_treatment: Optional[ExxdivTreatment] = "gygi-baldereschi"
618
- x_gamma_extrapolation: Optional[bool] = True
619
- """
620
- Specific for EXX. If .true., extrapolate the G=0 term of the potential
621
- """
622
- ecutvcut: Optional[float] = None
623
- """
624
- Reciprocal space cutoff for correcting Coulomb potential divergencies at small q vectors.
625
- """
626
- nqx1: Optional[int] = 0
627
- """
628
- Three-dimensional mesh for q (k1-k2) sampling of the Fock operator (EXX). Can be smaller than the number of k-points.
629
- """
630
- nqx2: Optional[int] = None
631
- """
632
- Three-dimensional mesh for q (k1-k2) sampling of the Fock operator (EXX). Can be smaller than the number of k-points.
633
- """
634
- nqx3: Optional[int] = None
635
- """
636
- Three-dimensional mesh for q (k1-k2) sampling of the Fock operator (EXX). Can be smaller than the number of k-points.
637
- """
638
- localization_thr: Optional[float] = 0
639
- """
640
- Overlap threshold over which the exchange integral over a pair of localized orbitals is included in the evaluation of EXX operator. Any value greater than 0.0 triggers the SCDM localization and the evaluation on EXX using the localized orbitals. Very small value of the threshold should yield the same result as the default EXX evaluation
641
- """
642
- Hubbard_occ: Optional[List[List[Union[HubbardOccItem6, HubbardOccItem7, float]]]] = None
643
- Hubbard_alpha: Optional[List[float]] = None
644
- Hubbard_beta: Optional[List[float]] = None
645
- starting_ns_eigenvalue: Optional[List[List[List[float]]]] = None
646
- dmft: Optional[bool] = False
647
- """
648
- If true, nscf calculation will exit in restart mode, scf calculation will restart from there if DMFT updates are provided as hdf5 archive. Scf calculation should be used only with electron_maxstep = 1.
649
- """
650
- dmft_prefix: Optional[str] = None
651
- """
652
- prepended to hdf5 archive: dmft_prefix.h5
653
- """
654
- ensemble_energies: Optional[bool] = False
655
- """
656
- If ensemble_energies = .true., an ensemble of xc energies is calculated non-selfconsistently for perturbed exchange-enhancement factors and LDA vs. PBE correlation ratios after each converged electronic ground state calculation.
657
- """
658
- edir: Optional[int] = None
659
- """
660
- The direction of the electric field or dipole correction is parallel to the bg(:,edir) reciprocal lattice vector, so the potential is constant in planes defined by FFT grid points; edir = 1, 2 or 3. Used only if tefield is .TRUE.
661
- """
662
- emaxpos: Optional[float] = 0.5
663
- """
664
- Position of the maximum of the saw-like potential along crystal axis edir, within the unit cell (see below), 0 < emaxpos < 1 Used only if tefield is .TRUE.
665
- """
666
- eopreg: Optional[float] = 0.1
667
- """
668
- Zone in the unit cell where the saw-like potential decreases. ( see below, 0 < eopreg < 1 ). Used only if tefield is .TRUE.
669
- """
670
- eamp: Optional[float] = 0.001
671
- angle1: Optional[List[float]] = Field(None, max_length=1, min_length=1)
672
- """
673
- The angle expressed in degrees between the initial magnetization and the z-axis. For noncollinear calculations only; index i runs over the atom types.
674
- """
675
- angle2: Optional[List[float]] = Field(None, max_length=1, min_length=1)
676
- """
677
- The angle expressed in degrees between the projection of the initial magnetization on x-y plane and the x-axis. For noncollinear calculations only.
678
- """
679
- lforcet: Optional[bool] = None
680
- """
681
- When starting a non collinear calculation using an existing density file from a collinear lsda calculation assumes previous density points in z direction and rotates it in the direction described by angle1 and angle2 variables for atomic type 1
682
- """
683
- constrained_magnetization: Optional[ConstrainedMagnetization] = "none"
684
- """
685
- Used to perform constrained calculations in magnetic systems.
686
- """
687
- fixed_magnetization: Optional[List[float]] = Field(None, max_length=3, min_length=3)
688
- lambda_: Optional[float] = Field(1, alias="lambda")
689
- """
690
- parameter used for constrained_magnetization calculations N.B.: if the scf calculation does not converge, try to reduce lambda to obtain convergence, then restart the run with a larger lambda
691
- """
692
- report: Optional[int] = -1
693
- """
694
- determines when atomic magnetic moments are printed on output
695
- """
696
- lspinorb: Optional[bool] = None
697
- """
698
- if .TRUE. the noncollinear code can use a pseudopotential with spin-orbit.
699
- """
700
- assume_isolated: Optional[AssumeIsolated] = "none"
701
- """
702
- Used to perform calculation assuming the system to be isolated (a molecule or a cluster in a 3D supercell)
703
- """
704
- esm_bc: Optional[EsmBc] = "pbc"
705
- """
706
- If assume_isolated = 'esm', determines the boundary conditions used for either side of the slab.
707
- """
708
- esm_w: Optional[float] = 0
709
- """
710
- If assume_isolated = 'esm', determines the position offset [in a.u.] of the start of the effective screening region, measured relative to the cell edge. (ESM region begins at z = +/- [L_z/2 + esm_w] ).
711
- """
712
- esm_efield: Optional[float] = 0
713
- """
714
- If assume_isolated = 'esm' and esm_bc = 'bc2', gives the magnitude of the electric field [Ry/a.u.] to be applied between semi-infinite ESM electrodes.
715
- """
716
- esm_nfit: Optional[int] = 4
717
- """
718
- If assume_isolated = 'esm', gives the number of z-grid points for the polynomial fit along the cell edge.
719
- """
720
- lgcscf: Optional[bool] = False
721
- """
722
- If .TRUE. perform a constant bias potential (constant-mu) calculation with Grand-Canonical SCF.
723
- """
724
- gcscf_mu: Optional[float] = None
725
- """
726
- The target Fermi energy (eV) of GC-SCF. One can start with appropriate total charge of the system by giving tot_charge
727
- """
728
- gcscf_conv_thr: Optional[float] = 0.01
729
- """
730
- Convergence threshold of Fermi energy (eV) for GC-SCF.
731
- """
732
- gcscf_beta: Optional[float] = 0.05
733
- """
734
- Mixing factor for GC-SCF. Larger values are recommended, if systems with small DOS on Fermi surface as graphite.
735
- """
736
- vdw_corr: Optional[VdwCorr] = "none"
737
- """
738
- Type of Van der Waals correction
739
- """
740
- london: Optional[bool] = False
741
- """
742
- OBSOLESCENT, same as vdw_corr='DFT-D'
743
- """
744
- london_s6: Optional[float] = 0.75
745
- """
746
- global scaling parameter for DFT-D. Default is good for PBE.
747
- """
748
- london_c6: Optional[float] = None
749
- """
750
- atomic C6 coefficient of each atom type
751
- """
752
- london_rvdw: Optional[float] = None
753
- """
754
- atomic vdw radii of each atom type
755
- """
756
- london_rcut: Optional[float] = 200
757
- """
758
- cutoff radius (a.u.) for dispersion interactions
759
- """
760
- dftd3_version: Optional[conint(ge=2, le=6)] = 3
761
- """
762
- Version of Grimme implementation of Grimme-D3
763
- """
764
- dftd3_threebody: Optional[bool] = True
765
- """
766
- Turn three-body terms in Grimme-D3 on. If .false. two-body contributions only are computed, using two-body parameters of Grimme-D3. If dftd3_version=2, three-body contribution is always disabled.
767
- """
768
- ts_vdw_econv_thr: Optional[float] = 1e-06
769
- """
770
- Optional: controls the convergence of the vdW energy (and forces). The default value is a safe choice, likely too safe, but you do not gain much in increasing it
771
- """
772
- ts_vdw_isolated: Optional[bool] = False
773
- """
774
- Optional: set it to .TRUE. when computing the Tkatchenko-Scheffler vdW energy or the Many-Body dispersion (MBD) energy for an isolated (non-periodic) system.
775
- """
776
- xdm: Optional[bool] = False
777
- """
778
- OBSOLESCENT, same as vdw_corr='xdm'
779
- """
780
- xdm_a1: Optional[float] = 0.6836
781
- """
782
- Damping function parameter a1 (adimensional)
783
- """
784
- xdm_a2: Optional[float] = 1.5045
785
- """
786
- Damping function parameter a2 (angstrom)
787
- """
788
- space_group: Optional[int] = 0
789
- """
790
- The number of the space group of the crystal, as given in the International Tables of Crystallography A (ITA)
791
- """
792
- uniqueb: Optional[bool] = False
793
- """
794
- Used only for monoclinic lattices
795
- """
796
- origin_choice: Optional[int] = 1
797
- """
798
- Used only for space groups that in the ITA allow the use of two different origins
799
- """
800
- rhombohedral: Optional[bool] = True
801
- """
802
- Used only for rhombohedral space groups.
803
- """
804
- zgate: Optional[float] = 0.5
805
- """
806
- used only if gate = .TRUE.
807
- """
808
- relaxz: Optional[bool] = False
809
- """
810
- used only if gate = .TRUE.
811
- """
812
- block: Optional[bool] = False
813
- """
814
- used only if gate = .TRUE.
815
- """
816
- block_1: Optional[float] = 0.45
817
- """
818
- used only if gate = .TRUE. and block = .TRUE.
819
- """
820
- block_2: Optional[float] = 0.55
821
- """
822
- used only if gate = .TRUE. and block = .TRUE.
823
- """
824
- block_height: Optional[float] = 0.1
825
- """
826
- used only if gate = .TRUE. and block = .TRUE.
827
- """
828
- nextffield: Optional[int] = 0
829
- """
830
- Number of activated external ionic force fields.
831
- """
832
- A: Optional[float] = None
833
- B: Optional[float] = None
834
- C: Optional[float] = None
835
- cosAB: Optional[float] = None
836
- cosAC: Optional[float] = None
837
- cosBC: Optional[float] = None
838
-
839
-
840
- class ESSE(RootModel[Union[SystemSchema, SystemSchema3]]):
841
- root: Union[SystemSchema, SystemSchema3] = Field(..., title="system schema")