mat3ra-esse 2025.6.14.post0__py3-none-any.whl → 2025.6.30.post0__py3-none-any.whl

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  1. {mat3ra_esse-2025.6.14.post0.dist-info → mat3ra_esse-2025.6.30.post0.dist-info}/METADATA +1 -1
  2. {mat3ra_esse-2025.6.14.post0.dist-info → mat3ra_esse-2025.6.30.post0.dist-info}/RECORD +5 -118
  3. mat3ra/esse/models/coordinates_shape_enum.py +0 -15
  4. mat3ra/esse/models/core/abstract/2d_data.py +0 -17
  5. mat3ra/esse/models/core/abstract/2d_plot.py +0 -34
  6. mat3ra/esse/models/core/abstract/3d_grid.py +0 -14
  7. mat3ra/esse/models/core/abstract/3d_tensor.py +0 -19
  8. mat3ra/esse/models/core/abstract/3d_vector_basis.py +0 -15
  9. mat3ra/esse/models/core/abstract/_3d_tensor.py +0 -19
  10. mat3ra/esse/models/core/abstract/_3d_vector_basis.py +0 -15
  11. mat3ra/esse/models/core/abstract/point.py +0 -13
  12. mat3ra/esse/models/core/abstract/vector.py +0 -13
  13. mat3ra/esse/models/core/primitive/1d_data_series.py +0 -13
  14. mat3ra/esse/models/core/primitive/3d_lattice.py +0 -34
  15. mat3ra/esse/models/core/primitive/_3d_lattice.py +0 -34
  16. mat3ra/esse/models/core/reusable/accuracy_level.py +0 -27
  17. mat3ra/esse/models/core/reusable/atomic_strings.py +0 -24
  18. mat3ra/esse/models/core/reusable/coordinate_conditions/cylinder.py +0 -26
  19. mat3ra/esse/models/core/reusable/coordinate_conditions/plane.py +0 -24
  20. mat3ra/esse/models/core/reusable/coordinate_conditions/sphere.py +0 -24
  21. mat3ra/esse/models/core/reusable/coordinate_conditions/triangular_prism.py +0 -27
  22. mat3ra/esse/models/core/reusable/energy_accuracy_levels/__init__.py +0 -3
  23. mat3ra/esse/models/core/reusable/energy_accuracy_levels.py +0 -31
  24. mat3ra/esse/models/enums/__init__.py +0 -3
  25. mat3ra/esse/models/enums/chemical_elements.py +0 -13
  26. mat3ra/esse/models/material/builders/base/__init__.py +0 -3
  27. mat3ra/esse/models/material/builders/base/selector_parameters.py +0 -16
  28. mat3ra/esse/models/material/builders/single_material/two_dimensional/slab/__init__.py +0 -3
  29. mat3ra/esse/models/material/builders/single_material/two_dimensional/slab/builder_parameters.py +0 -28
  30. mat3ra/esse/models/material/builders/single_material/two_dimensional/slab/selector_parameters.py +0 -151
  31. mat3ra/esse/models/material/reusable/__init__.py +0 -3
  32. mat3ra/esse/models/material/reusable/coordinate_conditions/__init__.py +0 -3
  33. mat3ra/esse/models/material/reusable/coordinate_conditions/base.py +0 -21
  34. mat3ra/esse/models/material/reusable/coordinate_conditions/box.py +0 -24
  35. mat3ra/esse/models/material/reusable/coordinate_conditions/cylinder.py +0 -26
  36. mat3ra/esse/models/material/reusable/coordinate_conditions/plane.py +0 -24
  37. mat3ra/esse/models/material/reusable/coordinate_conditions/sphere.py +0 -24
  38. mat3ra/esse/models/material/reusable/coordinate_conditions/triangular_prism.py +0 -27
  39. mat3ra/esse/models/material/reusable/repetitions.py +0 -25
  40. mat3ra/esse/models/material/reusable/slab/__init__.py +0 -3
  41. mat3ra/esse/models/material/reusable/slab/enums/__init__.py +0 -3
  42. mat3ra/esse/models/material/reusable/slab/enums/exposed_face.py +0 -13
  43. mat3ra/esse/models/material/reusable/slab/enums.py +0 -13
  44. mat3ra/esse/models/material/reusable/slab/miller_indices.py +0 -16
  45. mat3ra/esse/models/material/reusable/slab/number_of_layers.py +0 -16
  46. mat3ra/esse/models/material/reusable/slab/slab_configuration_with_termination.py +0 -589
  47. mat3ra/esse/models/material/reusable/slab/slab_with_termination.py +0 -593
  48. mat3ra/esse/models/material/reusable/slab/termination.py +0 -144
  49. mat3ra/esse/models/material/reusable/slab/two_slabs_stack.py +0 -618
  50. mat3ra/esse/models/material/reusable/slab/vacuum.py +0 -16
  51. mat3ra/esse/models/material/reusable/slab_configuration_with_termination.py +0 -712
  52. mat3ra/esse/models/material/reusable/stack/__init__.py +0 -3
  53. mat3ra/esse/models/material/reusable/stack/slab_configuration_with_termination.py +0 -593
  54. mat3ra/esse/models/material/reusable/stack/slab_in_stack.py +0 -720
  55. mat3ra/esse/models/material/reusable/stack/stack_of_slabs.py +0 -737
  56. mat3ra/esse/models/material/reusable/stack/stack_of_two_slabs.py +0 -737
  57. mat3ra/esse/models/material/reusable/supercell/__init__.py +0 -3
  58. mat3ra/esse/models/material/reusable/supercell/supercell_matrix_2d.py +0 -25
  59. mat3ra/esse/models/material/reusable/supercell/supercell_matrix_3d.py +0 -27
  60. mat3ra/esse/models/material/reusable/supercell_matrix_2d.py +0 -25
  61. mat3ra/esse/models/material/reusable/supercell_matrix_3d.py +0 -27
  62. mat3ra/esse/models/materials_category/defects/__init__.py +0 -3
  63. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/adatom/__init__.py +0 -3
  64. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/adatom/configuration.py +0 -672
  65. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/layered/__init__.py +0 -3
  66. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/layered/configuration.py +0 -549
  67. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/point/__init__.py +0 -3
  68. mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/point/configuration.py +0 -550
  69. mat3ra/esse/models/materials_category/defects/configuration.py +0 -545
  70. mat3ra/esse/models/materials_category/defects/enums/__init__.py +0 -3
  71. mat3ra/esse/models/materials_category/defects/enums/point_defect_type.py +0 -13
  72. mat3ra/esse/models/materials_category/defects/one_dimensional/terrace/__init__.py +0 -3
  73. mat3ra/esse/models/materials_category/defects/one_dimensional/terrace/configuration.py +0 -563
  74. mat3ra/esse/models/materials_category/defects/two_dimensional/grain_boundary_plane/__init__.py +0 -3
  75. mat3ra/esse/models/materials_category/defects/two_dimensional/grain_boundary_plane/configuration.py +0 -1200
  76. mat3ra/esse/models/materials_category/defects/two_dimensional/island/__init__.py +0 -3
  77. mat3ra/esse/models/materials_category/defects/two_dimensional/island/condition_json.py +0 -28
  78. mat3ra/esse/models/materials_category/defects/two_dimensional/island/configuration.py +0 -564
  79. mat3ra/esse/models/materials_category/defects/zero_dimensional/complex/pair/__init__.py +0 -3
  80. mat3ra/esse/models/materials_category/defects/zero_dimensional/complex/pair/configuration.py +0 -1538
  81. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/__init__.py +0 -3
  82. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/configuration.py +0 -672
  83. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/interstitial/__init__.py +0 -3
  84. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/interstitial/configuration.py +0 -672
  85. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/substitution/__init__.py +0 -3
  86. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/substitution/configuration.py +0 -672
  87. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/vacancy/__init__.py +0 -3
  88. mat3ra/esse/models/materials_category/defects/zero_dimensional/point/vacancy/configuration.py +0 -672
  89. mat3ra/esse/models/materials_category/multi_material/interfaces/__init__.py +0 -3
  90. mat3ra/esse/models/materials_category/multi_material/interfaces/configuration.py +0 -737
  91. mat3ra/esse/models/materials_category/single_material/two_dimensional/slab/__init__.py +0 -3
  92. mat3ra/esse/models/materials_category/single_material/two_dimensional/slab/configuration.py +0 -567
  93. mat3ra/esse/models/methods_directory/physical/psp/file/__init__.py +0 -129
  94. mat3ra/esse/models/methods_directory/physical/psp/file_data_item/__init__.py +0 -111
  95. mat3ra/esse/models/properties_directory/structural/lattice/lattice_bravais.py +0 -74
  96. mat3ra/esse/models/property/base/__init__.py +0 -200
  97. mat3ra/esse/models/property/meta/__init__.py +0 -200
  98. mat3ra/esse/models/property/raw/__init__.py +0 -200
  99. mat3ra/esse/models/property/source/__init__.py +0 -150
  100. mat3ra/esse/models/third_party/db/nist_jarvis/2024_3.13/__init__.py +0 -3
  101. mat3ra/esse/models/third_party/db/nist_jarvis/2024_3.13/atoms.py +0 -41
  102. mat3ra/esse/models/third_party/db/nist_jarvis/2024_3.13/db_entry.py +0 -55
  103. mat3ra/esse/models/third_party/file/applications/espresso/7.2/__init__.py +0 -3
  104. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/__init__.py +0 -3
  105. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/atomic_positions.py +0 -51
  106. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/atomic_species.py +0 -34
  107. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/cell.py +0 -111
  108. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/cell_parameters.py +0 -36
  109. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/control.py +0 -169
  110. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/electrons.py +0 -139
  111. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/hubbard.py +0 -194
  112. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/ions.py +0 -422
  113. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/k_points.py +0 -73
  114. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw.x/system.py +0 -841
  115. mat3ra/esse/models/third_party/file/applications/espresso/7.2/pw_x.py +0 -1990
  116. {mat3ra_esse-2025.6.14.post0.dist-info → mat3ra_esse-2025.6.30.post0.dist-info}/WHEEL +0 -0
  117. {mat3ra_esse-2025.6.14.post0.dist-info → mat3ra_esse-2025.6.30.post0.dist-info}/licenses/LICENSE.md +0 -0
  118. {mat3ra_esse-2025.6.14.post0.dist-info → mat3ra_esse-2025.6.30.post0.dist-info}/top_level.txt +0 -0
@@ -1,737 +0,0 @@
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- # generated by datamodel-codegen:
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- # filename: materials_category/multi_material/interfaces/configuration.json
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- # version: 0.28.5
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-
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- from __future__ import annotations
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-
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- from enum import Enum
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- from typing import Any, Dict, List, Literal, Optional, Union
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-
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- from pydantic import BaseModel, Field, RootModel, confloat, conint, constr
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-
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-
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- class Value(Enum):
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- H = "H"
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- He = "He"
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- Li = "Li"
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- Be = "Be"
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- B = "B"
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- C = "C"
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- N = "N"
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- O = "O"
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- F = "F"
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- Ne = "Ne"
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- Na = "Na"
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- Mg = "Mg"
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- Al = "Al"
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- Si = "Si"
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- P = "P"
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- S = "S"
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- Cl = "Cl"
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- Ar = "Ar"
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- K = "K"
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- Ca = "Ca"
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- Sc = "Sc"
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- Ti = "Ti"
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- V = "V"
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- Cr = "Cr"
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- Mn = "Mn"
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- Fe = "Fe"
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- Co = "Co"
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- Ni = "Ni"
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- Cu = "Cu"
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- Zn = "Zn"
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- Ga = "Ga"
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- Ge = "Ge"
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- As = "As"
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- Se = "Se"
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- Br = "Br"
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- Kr = "Kr"
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- Rb = "Rb"
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- Sr = "Sr"
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- Y = "Y"
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- Zr = "Zr"
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- Nb = "Nb"
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- Mo = "Mo"
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- Tc = "Tc"
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- Ru = "Ru"
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- Rh = "Rh"
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- Pd = "Pd"
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- Ag = "Ag"
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- Cd = "Cd"
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- In = "In"
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- Sn = "Sn"
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- Sb = "Sb"
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- Te = "Te"
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- I = "I"
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- Xe = "Xe"
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- Cs = "Cs"
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- Ba = "Ba"
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- La = "La"
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- Ce = "Ce"
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- Pr = "Pr"
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- Nd = "Nd"
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- Pm = "Pm"
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- Sm = "Sm"
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- Eu = "Eu"
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- Gd = "Gd"
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- Tb = "Tb"
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- Dy = "Dy"
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- Ho = "Ho"
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- Er = "Er"
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- Tm = "Tm"
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- Yb = "Yb"
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- Lu = "Lu"
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- Hf = "Hf"
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- Ta = "Ta"
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- W = "W"
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- Re = "Re"
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- Os = "Os"
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- Ir = "Ir"
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- Pt = "Pt"
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- Au = "Au"
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- Hg = "Hg"
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- Tl = "Tl"
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- Pb = "Pb"
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- Bi = "Bi"
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- Po = "Po"
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- At = "At"
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- Rn = "Rn"
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- Fr = "Fr"
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- Ra = "Ra"
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- Ac = "Ac"
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- Th = "Th"
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- Pa = "Pa"
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- U = "U"
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- Np = "Np"
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- Pu = "Pu"
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- Am = "Am"
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- Cm = "Cm"
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- Bk = "Bk"
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- Cf = "Cf"
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- Es = "Es"
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- Fm = "Fm"
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- Md = "Md"
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- No = "No"
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- Lr = "Lr"
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- Rf = "Rf"
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- Db = "Db"
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- Sg = "Sg"
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- Bh = "Bh"
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- Hs = "Hs"
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- Mt = "Mt"
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- Ds = "Ds"
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- Rg = "Rg"
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- Cn = "Cn"
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- Nh = "Nh"
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- Fl = "Fl"
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- Mc = "Mc"
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- Lv = "Lv"
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- Ts = "Ts"
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- Og = "Og"
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-
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-
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- class Value9(Enum):
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- X = "X"
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- Vac = "Vac"
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-
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-
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- class AtomicElementSchema(BaseModel):
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- value: Union[Value, Value9]
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- """
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- All elements, including extra elements
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- """
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- id: int
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- """
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- integer id of this entry
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- """
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-
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-
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- class AtomicCoordinateSchema(BaseModel):
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- value: List[float] = Field(..., max_length=3, min_length=3, title="coordinate 3d schema")
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- """
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- value of this entry
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- """
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- id: int
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- """
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- integer id of this entry
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- """
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-
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-
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- class BasisUnitsEnum(Enum):
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- crystal = "crystal"
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- cartesian = "cartesian"
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-
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-
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- class AtomicLabelSchema(BaseModel):
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- value: Union[Union[int, str, float], conint(ge=1, le=9)]
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- """
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- value of this entry
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- """
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- id: int
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- """
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- integer id of this entry
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- """
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-
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-
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- class BasisSchema(BaseModel):
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- elements: List[AtomicElementSchema] = Field(..., title="atomic elements schema")
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- """
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- atomic elements schema
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- """
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- coordinates: List[AtomicCoordinateSchema] = Field(..., title="atomic coordinates schema")
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- """
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- atomic coordinates schema
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- """
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- units: Optional[BasisUnitsEnum] = Field("crystal", title="basis units enum")
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- labels: Optional[List[AtomicLabelSchema]] = Field(None, title="atomic labels schema")
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- """
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- atomic labels schema
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- """
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-
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-
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- class LatticeVectorsUnitsEnum(Enum):
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- angstrom = "angstrom"
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- bohr = "bohr"
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-
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-
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- class LatticeVectorsSchema(BaseModel):
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- a: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
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- b: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
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- c: List[float] = Field(..., max_length=3, min_length=3, title="vector 3d schema")
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- alat: Optional[float] = 1
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- """
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- lattice parameter for fractional coordinates
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- """
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- units: Optional[LatticeVectorsUnitsEnum] = Field("angstrom", title="lattice vectors units enum")
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-
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-
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- class LatticeTypeEnum(Enum):
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- CUB = "CUB"
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- BCC = "BCC"
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- FCC = "FCC"
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- TET = "TET"
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- MCL = "MCL"
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- ORC = "ORC"
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- ORCC = "ORCC"
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- ORCF = "ORCF"
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- ORCI = "ORCI"
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- HEX = "HEX"
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- BCT = "BCT"
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- TRI = "TRI"
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- MCLC = "MCLC"
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- RHL = "RHL"
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-
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-
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- class LatticeUnitsLengthEnum(Enum):
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- angstrom = "angstrom"
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- bohr = "bohr"
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-
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-
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- class LatticeUnitsAngleEnum(Enum):
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- degree = "degree"
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- radian = "radian"
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-
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-
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- class LatticeUnitsSchema(BaseModel):
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- length: Optional[LatticeUnitsLengthEnum] = Field("angstrom", title="lattice units length enum")
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- angle: Optional[LatticeUnitsAngleEnum] = Field("degree", title="lattice units angle enum")
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-
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-
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- class LatticeSchema(BaseModel):
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- a: float
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- """
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- length of the first lattice vector
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- """
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- b: float
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- """
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- length of the second lattice vector
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- """
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- c: float
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- """
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- length of the third lattice vector
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- """
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- alpha: float
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- """
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- angle between first and second lattice vector
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- """
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- beta: float
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- """
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- angle between second and third lattice vector
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- """
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- gamma: float
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- """
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- angle between first and third lattice vector
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- """
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- vectors: Optional[LatticeVectorsSchema] = Field(None, title="lattice vectors schema")
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- type: Optional[LatticeTypeEnum] = Field("TRI", title="lattice type enum")
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- units: Optional[LatticeUnitsSchema] = Field(
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- default_factory=lambda: LatticeUnitsSchema.model_validate({"length": "angstrom", "angle": "degree"}),
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- title="Lattice units schema",
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- )
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-
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-
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- class Name(Enum):
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- volume = "volume"
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-
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-
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- class Units(Enum):
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- angstrom_3 = "angstrom^3"
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-
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-
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- class VolumeSchema(BaseModel):
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- name: Literal["0#-datamodel-code-generator-#-object-#-special-#"]
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- units: Optional[Units] = None
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- value: float
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-
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-
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- class Name8(Enum):
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- density = "density"
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-
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-
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- class Units10(Enum):
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- g_cm_3 = "g/cm^3"
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-
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-
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- class DensitySchema(BaseModel):
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- name: Literal["1#-datamodel-code-generator-#-object-#-special-#"]
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- units: Optional[Units10] = None
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- value: float
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-
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-
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- class Units11(Enum):
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- angstrom = "angstrom"
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-
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-
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- class ScalarSchema(BaseModel):
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- units: Optional[Units11] = None
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- value: float
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-
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-
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- class Name9(Enum):
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- symmetry = "symmetry"
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-
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-
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- class SymmetrySchema(BaseModel):
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- pointGroupSymbol: Optional[str] = None
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- """
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- point group symbol in Schoenflies notation
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- """
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- spaceGroupSymbol: Optional[str] = None
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- """
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- space group symbol in Hermann–Mauguin notation
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- """
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- tolerance: Optional[ScalarSchema] = Field(None, title="scalar schema")
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- """
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- tolerance used for symmetry calculation
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- """
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- name: Literal["2#-datamodel-code-generator-#-object-#-special-#"]
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-
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-
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- class Name10(Enum):
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- elemental_ratio = "elemental_ratio"
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-
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-
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- class ElementalRatio(BaseModel):
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- name: Literal["3#-datamodel-code-generator-#-object-#-special-#"]
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- value: confloat(ge=0.0, le=1.0)
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- element: Optional[str] = None
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- """
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- the element this ratio is for
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- """
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-
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-
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- class Name11(Enum):
345
- p_norm = "p-norm"
346
-
347
-
348
- class PNorm(BaseModel):
349
- name: Literal["4#-datamodel-code-generator-#-object-#-special-#"]
350
- degree: Optional[int] = None
351
- """
352
- degree of the dimensionality of the norm
353
- """
354
- value: float
355
-
356
-
357
- class Name12(Enum):
358
- inchi = "inchi"
359
-
360
-
361
- class InChIRepresentationSchema(BaseModel):
362
- name: Literal["5#-datamodel-code-generator-#-object-#-special-#"]
363
- value: str
364
-
365
-
366
- class Name13(Enum):
367
- inchi_key = "inchi_key"
368
-
369
-
370
- class InChIKeyRepresentationSchema(BaseModel):
371
- name: Literal["6#-datamodel-code-generator-#-object-#-special-#"]
372
- value: str
373
-
374
-
375
- class DerivedPropertiesSchema(
376
- RootModel[
377
- Union[
378
- VolumeSchema,
379
- DensitySchema,
380
- SymmetrySchema,
381
- ElementalRatio,
382
- PNorm,
383
- InChIRepresentationSchema,
384
- InChIKeyRepresentationSchema,
385
- ]
386
- ]
387
- ):
388
- root: Union[
389
- VolumeSchema,
390
- DensitySchema,
391
- SymmetrySchema,
392
- ElementalRatio,
393
- PNorm,
394
- InChIRepresentationSchema,
395
- InChIKeyRepresentationSchema,
396
- ] = Field(..., discriminator="name")
397
-
398
-
399
- class DatabaseSourceSchema(BaseModel):
400
- id: Union[str, float]
401
- """
402
- ID string for the materials uploaded from a third party source inside the third party source. For materialsproject.org an example ID is mp-32
403
- """
404
- source: str
405
- """
406
- Third party source name, e.g. materials project, 2dmatpedia, ICSD, etc.
407
- """
408
- origin: bool
409
- """
410
- Deprecated. To be removed. A flag that is true when material is initially imported from a third party * (as opposed to being independently designed from scratch).
411
- """
412
- data: Optional[Dict[str, Any]] = None
413
- """
414
- Original response from external source.
415
- """
416
- doi: Optional[str] = None
417
- """
418
- Digital Object Identifier, e.g. 10.1088/0953-8984/25/10/105506
419
- """
420
- url: Optional[str] = None
421
- """
422
- The URL of the original record, e.g. https://next-gen.materialsproject.org/materials/mp-48; ToDo: update to use URI type per https://json-schema.org/understanding-json-schema/reference/string#resource-identifiers
423
- """
424
-
425
-
426
- class FileSourceSchema(BaseModel):
427
- extension: Optional[str] = None
428
- """
429
- file extension
430
- """
431
- filename: str
432
- """
433
- file name without extension
434
- """
435
- text: str
436
- """
437
- file content as raw text
438
- """
439
- hash: str
440
- """
441
- MD5 hash based on file content
442
- """
443
-
444
-
445
- class Name14(Enum):
446
- default = "default"
447
- atomsTooClose = "atomsTooClose"
448
- atomsOverlap = "atomsOverlap"
449
-
450
-
451
- class Severity(Enum):
452
- info = "info"
453
- warning = "warning"
454
- error = "error"
455
-
456
-
457
- class MaterialConsistencyCheckSchema(BaseModel):
458
- name: Name14
459
- """
460
- Name of the consistency check that is performed, which is listed in an enum.
461
- """
462
- key: str
463
- """
464
- Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
465
- """
466
- severity: Severity
467
- """
468
- Severity level of the problem, which is used in UI to differentiate.
469
- """
470
- message: str
471
- """
472
- Message generated by the consistency check describing the problem.
473
- """
474
-
475
-
476
- class MaterialSchema(BaseModel):
477
- formula: Optional[str] = None
478
- """
479
- reduced chemical formula
480
- """
481
- unitCellFormula: Optional[str] = None
482
- """
483
- chemical formula based on the number of atoms of each element in the supercell
484
- """
485
- basis: BasisSchema = Field(..., title="basis schema")
486
- lattice: LatticeSchema = Field(..., title="lattice schema")
487
- derivedProperties: Optional[List[DerivedPropertiesSchema]] = Field(None, title="derived properties schema")
488
- external: Optional[DatabaseSourceSchema] = Field(None, title="database source schema")
489
- """
490
- information about a database source
491
- """
492
- src: Optional[FileSourceSchema] = Field(None, title="file source schema")
493
- """
494
- file source with the information inside
495
- """
496
- scaledHash: Optional[str] = None
497
- """
498
- Hash string for a scaled structure with lattice vector a set to 1 (eg. for materials under pressure).
499
- """
500
- icsdId: Optional[int] = None
501
- """
502
- Corresponding ICSD id of the material
503
- """
504
- isNonPeriodic: Optional[bool] = None
505
- """
506
- Whether to work in the finite molecular picture (usually with atomic orbital basis)
507
- """
508
- consistencyChecks: Optional[List[MaterialConsistencyCheckSchema]] = None
509
- field_id: Optional[str] = Field(None, alias="_id")
510
- """
511
- entity identity
512
- """
513
- slug: Optional[str] = None
514
- """
515
- entity slug
516
- """
517
- systemName: Optional[str] = None
518
- schemaVersion: Optional[str] = "2022.8.16"
519
- """
520
- entity's schema version. Used to distinct between different schemas.
521
- """
522
- name: Optional[str] = None
523
- """
524
- entity name
525
- """
526
- isDefault: Optional[bool] = False
527
- """
528
- Identifies that entity is defaultable
529
- """
530
- metadata: Optional[Dict[str, Any]] = None
531
-
532
-
533
- class SupercellMatrix2DSchemaItem(RootModel[List[int]]):
534
- root: List[int]
535
-
536
-
537
- class SlabConfigurationSchema(BaseModel):
538
- bulk: Optional[MaterialSchema] = Field(None, title="material schema")
539
- miller_indices: Optional[List[int]] = Field([0, 0, 1], max_length=3, min_length=3, title="Miller Indices Schema")
540
- """
541
- Miller indices for crystallographic plane designation
542
- """
543
- number_of_layers: Optional[conint(ge=1)] = Field(1, title="Number of Layers Schema")
544
- """
545
- Number of atomic layers in a structural component
546
- """
547
- vacuum: Optional[confloat(ge=0.0)] = Field(5, title="Vacuum Thickness Schema")
548
- """
549
- Vacuum thickness in Angstroms
550
- """
551
- xy_supercell_matrix: Optional[List[SupercellMatrix2DSchemaItem]] = Field(
552
- default_factory=lambda: [SupercellMatrix2DSchemaItem.model_validate(v) for v in [[1, 0], [0, 1]]],
553
- max_length=2,
554
- min_length=2,
555
- title="Supercell Matrix 2D Schema",
556
- )
557
- """
558
- Supercell matrix for xy plane transformations
559
- """
560
- use_conventional_cell: Optional[bool] = Field(True, title="Use Conventional Cell")
561
- """
562
- Whether to use conventional cell when generating the slab.
563
- """
564
- use_orthogonal_z: Optional[bool] = Field(True, title="Use Orthogonal Z")
565
- """
566
- Whether to make vector c orthogonal to ab plane for the slab cell.
567
- """
568
-
569
-
570
- class ChemicalElements(Enum):
571
- H = "H"
572
- He = "He"
573
- Li = "Li"
574
- Be = "Be"
575
- B = "B"
576
- C = "C"
577
- N = "N"
578
- O = "O"
579
- F = "F"
580
- Ne = "Ne"
581
- Na = "Na"
582
- Mg = "Mg"
583
- Al = "Al"
584
- Si = "Si"
585
- P = "P"
586
- S = "S"
587
- Cl = "Cl"
588
- Ar = "Ar"
589
- K = "K"
590
- Ca = "Ca"
591
- Sc = "Sc"
592
- Ti = "Ti"
593
- V = "V"
594
- Cr = "Cr"
595
- Mn = "Mn"
596
- Fe = "Fe"
597
- Co = "Co"
598
- Ni = "Ni"
599
- Cu = "Cu"
600
- Zn = "Zn"
601
- Ga = "Ga"
602
- Ge = "Ge"
603
- As = "As"
604
- Se = "Se"
605
- Br = "Br"
606
- Kr = "Kr"
607
- Rb = "Rb"
608
- Sr = "Sr"
609
- Y = "Y"
610
- Zr = "Zr"
611
- Nb = "Nb"
612
- Mo = "Mo"
613
- Tc = "Tc"
614
- Ru = "Ru"
615
- Rh = "Rh"
616
- Pd = "Pd"
617
- Ag = "Ag"
618
- Cd = "Cd"
619
- In = "In"
620
- Sn = "Sn"
621
- Sb = "Sb"
622
- Te = "Te"
623
- I = "I"
624
- Xe = "Xe"
625
- Cs = "Cs"
626
- Ba = "Ba"
627
- La = "La"
628
- Ce = "Ce"
629
- Pr = "Pr"
630
- Nd = "Nd"
631
- Pm = "Pm"
632
- Sm = "Sm"
633
- Eu = "Eu"
634
- Gd = "Gd"
635
- Tb = "Tb"
636
- Dy = "Dy"
637
- Ho = "Ho"
638
- Er = "Er"
639
- Tm = "Tm"
640
- Yb = "Yb"
641
- Lu = "Lu"
642
- Hf = "Hf"
643
- Ta = "Ta"
644
- W = "W"
645
- Re = "Re"
646
- Os = "Os"
647
- Ir = "Ir"
648
- Pt = "Pt"
649
- Au = "Au"
650
- Hg = "Hg"
651
- Tl = "Tl"
652
- Pb = "Pb"
653
- Bi = "Bi"
654
- Po = "Po"
655
- At = "At"
656
- Rn = "Rn"
657
- Fr = "Fr"
658
- Ra = "Ra"
659
- Ac = "Ac"
660
- Th = "Th"
661
- Pa = "Pa"
662
- U = "U"
663
- Np = "Np"
664
- Pu = "Pu"
665
- Am = "Am"
666
- Cm = "Cm"
667
- Bk = "Bk"
668
- Cf = "Cf"
669
- Es = "Es"
670
- Fm = "Fm"
671
- Md = "Md"
672
- No = "No"
673
- Lr = "Lr"
674
- Rf = "Rf"
675
- Db = "Db"
676
- Sg = "Sg"
677
- Bh = "Bh"
678
- Hs = "Hs"
679
- Mt = "Mt"
680
- Ds = "Ds"
681
- Rg = "Rg"
682
- Cn = "Cn"
683
- Nh = "Nh"
684
- Fl = "Fl"
685
- Mc = "Mc"
686
- Lv = "Lv"
687
- Ts = "Ts"
688
- Og = "Og"
689
-
690
-
691
- class TerminationSchema(BaseModel):
692
- chemical_elements: Union[ChemicalElements, constr(pattern=r"^([A-Z][a-z]?[0-9]*)+$")] = Field(
693
- ..., title="Chemical Elements"
694
- )
695
- """
696
- Chemical elements at the termination. Can be a single element (e.g. 'Si') or a compound (e.g. 'SiO')
697
- """
698
- space_group_symmetry_label: str = Field(..., title="Space Group Symmetry Label")
699
- """
700
- Space group symmetry designation for the termination
701
- """
702
-
703
-
704
- class SlabInStackConfigurationSchema(BaseModel):
705
- stack_component: Optional[str] = None
706
- """
707
- Component of the stack (e.g., slab1, slab2)
708
- """
709
- distance_to_next_slab: Optional[float] = 3
710
- """
711
- Distance to the next slab in the stack, in Angstroms
712
- """
713
- slab_configuration: SlabConfigurationSchema = Field(..., title="Slab Configuration Schema")
714
- """
715
- Configuration for creating a slab from a bulk material
716
- """
717
- termination: TerminationSchema = Field(..., title="Termination Schema")
718
- """
719
- Defines a specific termination of a slab
720
- """
721
-
722
-
723
- class AxisEnum(Enum):
724
- x = "x"
725
- y = "y"
726
- z = "z"
727
-
728
-
729
- class InterfaceConfigurationSchema(BaseModel):
730
- stack_slab_configurations: List[SlabInStackConfigurationSchema] = Field(..., max_length=2, min_length=2)
731
- """
732
- List of slab configurations for the slabs in the stack
733
- """
734
- stacking_direction: Optional[AxisEnum] = Field("z", title="Axis Enum")
735
- """
736
- The axis along which the slabs are stacked
737
- """