mat3ra-esse 2025.5.16.post0__py3-none-any.whl → 2025.5.17.post0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of mat3ra-esse might be problematic. Click here for more details.
- mat3ra/esse/data/examples.py +1 -1
- mat3ra/esse/data/schemas.py +1 -1
- mat3ra/esse/models/apse/file/applications/espresso/7.2/pw_x.py +8 -8
- mat3ra/esse/models/core/reusable/energy.py +2 -2
- mat3ra/esse/models/definitions/chemical_elements.py +13 -0
- mat3ra/esse/models/definitions/materials.py +13 -0
- mat3ra/esse/models/element.py +128 -10
- mat3ra/esse/models/enums/__init__.py +3 -0
- mat3ra/esse/models/enums/chemical_elements.py +13 -0
- mat3ra/esse/models/material/__init__.py +140 -14
- mat3ra/esse/models/material/builders/single_material/two_dimensional/slab/selector_parameters.py +128 -4
- mat3ra/esse/models/material/reusable/slab/enums/__init__.py +3 -0
- mat3ra/esse/models/material/reusable/slab/enums/exposed_face.py +13 -0
- mat3ra/esse/models/material/reusable/slab/number_of_layers.py +1 -1
- mat3ra/esse/models/material/reusable/slab/termination.py +129 -3
- mat3ra/esse/models/material/reusable/slab/vacuum.py +2 -2
- mat3ra/esse/models/materials_category/defects/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/adatom/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/adatom/configuration.py +672 -0
- mat3ra/esse/models/materials_category/defects/by_host/two_dimensional/configuration.py +546 -0
- mat3ra/esse/models/materials_category/defects/configuration.py +541 -0
- mat3ra/esse/models/materials_category/defects/enums/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/enums/atom_placement_method.py +22 -0
- mat3ra/esse/models/materials_category/defects/enums/complex_defect_type.py +18 -0
- mat3ra/esse/models/materials_category/defects/enums/coordinates_shape.py +21 -0
- mat3ra/esse/models/materials_category/defects/enums/point_defect_type.py +13 -0
- mat3ra/esse/models/materials_category/defects/enums/slab_defect_type.py +19 -0
- mat3ra/esse/models/materials_category/defects/enums.py +13 -0
- mat3ra/esse/models/materials_category/defects/one_dimensional/terrace/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/one_dimensional/terrace/configuration.py +425 -0
- mat3ra/esse/models/materials_category/defects/slab/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/slab/configuration.py +412 -0
- mat3ra/esse/models/materials_category/defects/two_dimensional/island/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/two_dimensional/island/configuration.py +449 -0
- mat3ra/esse/models/materials_category/defects/two_dimensional/slab_grain_boundary/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/two_dimensional/slab_grain_boundary/configuration.py +1105 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/adatom/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/adatom/base_configuration.py +418 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/adatom/configuration.py +418 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/complex/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/complex/pair.py +1534 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/defect_pair/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/defect_pair/configuration.py +1026 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/point/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/point/base_configuration.py +30 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/point/configuration.py +672 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/point/interstitial/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/point/interstitial/configuration.py +672 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/point/substitution/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/point/substitution/configuration.py +672 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/point/vacancy/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/point/vacancy/configuration.py +672 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/slab/__init__.py +3 -0
- mat3ra/esse/models/materials_category/defects/zero_dimensional/slab/configuration.py +434 -0
- mat3ra/esse/models/materials_category/single_material/two_dimensional/slab/configuration.py +142 -16
- mat3ra/esse/models/properties_directory/derived_properties.py +11 -11
- mat3ra/esse/models/properties_directory/non_scalar/density_of_states.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dispersions.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/phonon_dos.py +2 -2
- mat3ra/esse/models/properties_directory/non_scalar/total_energy_contributions.py +50 -50
- mat3ra/esse/models/properties_directory/non_scalar/vibrational_spectrum.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/electron_affinity.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/fermi_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/formation_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/ionization_potential.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/reaction_energy_barrier.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/surface_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/total_energy.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/valence_band_offset.py +2 -2
- mat3ra/esse/models/properties_directory/scalar/zero_point_energy.py +2 -2
- mat3ra/esse/models/properties_directory/structural/basis/__init__.py +128 -2
- mat3ra/esse/models/properties_directory/structural/basis/atomic_element.py +131 -2
- mat3ra/esse/models/properties_directory/structural/basis/atomic_elements.py +130 -3
- mat3ra/esse/models/properties_directory/structural/molecular_pattern.py +4 -4
- mat3ra/esse/models/properties_directory/workflow/convergence/ionic.py +2 -2
- {mat3ra_esse-2025.5.16.post0.dist-info → mat3ra_esse-2025.5.17.post0.dist-info}/METADATA +1 -1
- {mat3ra_esse-2025.5.16.post0.dist-info → mat3ra_esse-2025.5.17.post0.dist-info}/RECORD +81 -36
- {mat3ra_esse-2025.5.16.post0.dist-info → mat3ra_esse-2025.5.17.post0.dist-info}/WHEEL +0 -0
- {mat3ra_esse-2025.5.16.post0.dist-info → mat3ra_esse-2025.5.17.post0.dist-info}/licenses/LICENSE.md +0 -0
- {mat3ra_esse-2025.5.16.post0.dist-info → mat3ra_esse-2025.5.17.post0.dist-info}/top_level.txt +0 -0
|
@@ -4,13 +4,139 @@
|
|
|
4
4
|
|
|
5
5
|
from __future__ import annotations
|
|
6
6
|
|
|
7
|
-
from
|
|
7
|
+
from enum import Enum
|
|
8
|
+
from typing import Union
|
|
9
|
+
|
|
10
|
+
from pydantic import BaseModel, Field, constr
|
|
11
|
+
|
|
12
|
+
|
|
13
|
+
class ChemicalElements(Enum):
|
|
14
|
+
H = "H"
|
|
15
|
+
He = "He"
|
|
16
|
+
Li = "Li"
|
|
17
|
+
Be = "Be"
|
|
18
|
+
B = "B"
|
|
19
|
+
C = "C"
|
|
20
|
+
N = "N"
|
|
21
|
+
O = "O"
|
|
22
|
+
F = "F"
|
|
23
|
+
Ne = "Ne"
|
|
24
|
+
Na = "Na"
|
|
25
|
+
Mg = "Mg"
|
|
26
|
+
Al = "Al"
|
|
27
|
+
Si = "Si"
|
|
28
|
+
P = "P"
|
|
29
|
+
S = "S"
|
|
30
|
+
Cl = "Cl"
|
|
31
|
+
Ar = "Ar"
|
|
32
|
+
K = "K"
|
|
33
|
+
Ca = "Ca"
|
|
34
|
+
Sc = "Sc"
|
|
35
|
+
Ti = "Ti"
|
|
36
|
+
V = "V"
|
|
37
|
+
Cr = "Cr"
|
|
38
|
+
Mn = "Mn"
|
|
39
|
+
Fe = "Fe"
|
|
40
|
+
Co = "Co"
|
|
41
|
+
Ni = "Ni"
|
|
42
|
+
Cu = "Cu"
|
|
43
|
+
Zn = "Zn"
|
|
44
|
+
Ga = "Ga"
|
|
45
|
+
Ge = "Ge"
|
|
46
|
+
As = "As"
|
|
47
|
+
Se = "Se"
|
|
48
|
+
Br = "Br"
|
|
49
|
+
Kr = "Kr"
|
|
50
|
+
Rb = "Rb"
|
|
51
|
+
Sr = "Sr"
|
|
52
|
+
Y = "Y"
|
|
53
|
+
Zr = "Zr"
|
|
54
|
+
Nb = "Nb"
|
|
55
|
+
Mo = "Mo"
|
|
56
|
+
Tc = "Tc"
|
|
57
|
+
Ru = "Ru"
|
|
58
|
+
Rh = "Rh"
|
|
59
|
+
Pd = "Pd"
|
|
60
|
+
Ag = "Ag"
|
|
61
|
+
Cd = "Cd"
|
|
62
|
+
In = "In"
|
|
63
|
+
Sn = "Sn"
|
|
64
|
+
Sb = "Sb"
|
|
65
|
+
Te = "Te"
|
|
66
|
+
I = "I"
|
|
67
|
+
Xe = "Xe"
|
|
68
|
+
Cs = "Cs"
|
|
69
|
+
Ba = "Ba"
|
|
70
|
+
La = "La"
|
|
71
|
+
Ce = "Ce"
|
|
72
|
+
Pr = "Pr"
|
|
73
|
+
Nd = "Nd"
|
|
74
|
+
Pm = "Pm"
|
|
75
|
+
Sm = "Sm"
|
|
76
|
+
Eu = "Eu"
|
|
77
|
+
Gd = "Gd"
|
|
78
|
+
Tb = "Tb"
|
|
79
|
+
Dy = "Dy"
|
|
80
|
+
Ho = "Ho"
|
|
81
|
+
Er = "Er"
|
|
82
|
+
Tm = "Tm"
|
|
83
|
+
Yb = "Yb"
|
|
84
|
+
Lu = "Lu"
|
|
85
|
+
Hf = "Hf"
|
|
86
|
+
Ta = "Ta"
|
|
87
|
+
W = "W"
|
|
88
|
+
Re = "Re"
|
|
89
|
+
Os = "Os"
|
|
90
|
+
Ir = "Ir"
|
|
91
|
+
Pt = "Pt"
|
|
92
|
+
Au = "Au"
|
|
93
|
+
Hg = "Hg"
|
|
94
|
+
Tl = "Tl"
|
|
95
|
+
Pb = "Pb"
|
|
96
|
+
Bi = "Bi"
|
|
97
|
+
Po = "Po"
|
|
98
|
+
At = "At"
|
|
99
|
+
Rn = "Rn"
|
|
100
|
+
Fr = "Fr"
|
|
101
|
+
Ra = "Ra"
|
|
102
|
+
Ac = "Ac"
|
|
103
|
+
Th = "Th"
|
|
104
|
+
Pa = "Pa"
|
|
105
|
+
U = "U"
|
|
106
|
+
Np = "Np"
|
|
107
|
+
Pu = "Pu"
|
|
108
|
+
Am = "Am"
|
|
109
|
+
Cm = "Cm"
|
|
110
|
+
Bk = "Bk"
|
|
111
|
+
Cf = "Cf"
|
|
112
|
+
Es = "Es"
|
|
113
|
+
Fm = "Fm"
|
|
114
|
+
Md = "Md"
|
|
115
|
+
No = "No"
|
|
116
|
+
Lr = "Lr"
|
|
117
|
+
Rf = "Rf"
|
|
118
|
+
Db = "Db"
|
|
119
|
+
Sg = "Sg"
|
|
120
|
+
Bh = "Bh"
|
|
121
|
+
Hs = "Hs"
|
|
122
|
+
Mt = "Mt"
|
|
123
|
+
Ds = "Ds"
|
|
124
|
+
Rg = "Rg"
|
|
125
|
+
Cn = "Cn"
|
|
126
|
+
Nh = "Nh"
|
|
127
|
+
Fl = "Fl"
|
|
128
|
+
Mc = "Mc"
|
|
129
|
+
Lv = "Lv"
|
|
130
|
+
Ts = "Ts"
|
|
131
|
+
Og = "Og"
|
|
8
132
|
|
|
9
133
|
|
|
10
134
|
class TerminationSchema(BaseModel):
|
|
11
|
-
chemical_elements:
|
|
135
|
+
chemical_elements: Union[ChemicalElements, constr(pattern=r"^[A-Z][a-z]?([A-Z][a-z]?)*$")] = Field(
|
|
136
|
+
..., title="Chemical Elements"
|
|
137
|
+
)
|
|
12
138
|
"""
|
|
13
|
-
Chemical elements at the termination
|
|
139
|
+
Chemical elements at the termination. Can be a single element (e.g. 'Si') or a compound (e.g. 'SiO')
|
|
14
140
|
"""
|
|
15
141
|
space_group_symmetry_label: str = Field(..., title="Space Group Symmetry Label")
|
|
16
142
|
"""
|
|
@@ -9,8 +9,8 @@ from typing import Optional
|
|
|
9
9
|
from pydantic import Field, RootModel, confloat
|
|
10
10
|
|
|
11
11
|
|
|
12
|
-
class
|
|
13
|
-
root: Optional[confloat(ge=0.0)] = Field(5, title="Vacuum Schema")
|
|
12
|
+
class VacuumThicknessSchema(RootModel[Optional[confloat(ge=0.0)]]):
|
|
13
|
+
root: Optional[confloat(ge=0.0)] = Field(5, title="Vacuum Thickness Schema")
|
|
14
14
|
"""
|
|
15
15
|
Vacuum thickness in Angstroms
|
|
16
16
|
"""
|