mat3ra-esse 2024.4.8.post1__py3-none-any.whl → 2024.4.8.post3__py3-none-any.whl

mat3ra/esse/models/software_directory/modeling/unit/execution.py

@@ -0,0 +1,390 @@
+# generated by datamodel-codegen:
+#   filename:  software_directory/modeling/unit/execution.json
+#   version:   0.25.5
+
+from __future__ import annotations
+
+from enum import Enum
+from typing import Any, Dict, List, Optional, Union
+
+from pydantic import BaseModel, ConfigDict, Field
+
+
+class Type(Enum):
+    execution = "execution"
+
+
+class Name(Enum):
+    default = "default"
+    atomsTooClose = "atomsTooClose"
+    atomsOverlap = "atomsOverlap"
+
+
+class Severity(Enum):
+    info = "info"
+    warning = "warning"
+    error = "error"
+
+
+class ConsistencyCheck(BaseModel):
+    key: str
+    """
+    Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
+    """
+    name: Name
+    """
+    Name of the consistency check that is performed, which is listed in an enum.
+    """
+    severity: Severity
+    """
+    Severity level of the problem, which is used in UI to differentiate.
+    """
+    message: str
+    """
+    Message generated by the consistency check describing the problem.
+    """
+
+
+class ApplicationSchemaBase(BaseModel):
+    model_config = ConfigDict(
+        extra="allow",
+    )
+    shortName: Optional[str] = None
+    """
+    The short name of the application. e.g. qe
+    """
+    summary: Optional[str] = None
+    """
+    Application's short description.
+    """
+    version: Optional[str] = None
+    """
+    Application version. e.g. 5.3.5
+    """
+    build: Optional[str] = None
+    """
+    Application build. e.g. VTST
+    """
+    hasAdvancedComputeOptions: Optional[bool] = None
+    """
+    Whether advanced compute options are present
+    """
+    isLicensed: Optional[bool] = None
+    """
+    Whether licensing is present
+    """
+    field_id: Optional[str] = Field(None, alias="_id")
+    """
+    entity identity
+    """
+    slug: Optional[str] = None
+    """
+    entity slug
+    """
+    systemName: Optional[str] = None
+    consistencyChecks: Optional[List[ConsistencyCheck]] = None
+    schemaVersion: Optional[str] = "2022.8.16"
+    """
+    entity's schema version. Used to distinct between different schemas.
+    """
+    name: Optional[str] = None
+    """
+    entity name
+    """
+    isDefault: Optional[bool] = False
+    """
+    Identifies that entity is defaultable
+    """
+
+
+class ConsistencyCheck27(BaseModel):
+    key: str
+    """
+    Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
+    """
+    name: Name
+    """
+    Name of the consistency check that is performed, which is listed in an enum.
+    """
+    severity: Severity
+    """
+    Severity level of the problem, which is used in UI to differentiate.
+    """
+    message: str
+    """
+    Message generated by the consistency check describing the problem.
+    """
+
+
+class NameResultSchema(BaseModel):
+    name: str
+    """
+    The name of this item. e.g. scf_accuracy
+    """
+
+
+class ExecutableSchema(BaseModel):
+    name: str
+    """
+    The name of the executable. e.g. pw.x
+    """
+    applicationId: Optional[List[str]] = None
+    """
+    _ids of the application this executable belongs to
+    """
+    hasAdvancedComputeOptions: Optional[bool] = None
+    """
+    Whether advanced compute options are present
+    """
+    field_id: Optional[str] = Field(None, alias="_id")
+    """
+    entity identity
+    """
+    slug: Optional[str] = None
+    """
+    entity slug
+    """
+    systemName: Optional[str] = None
+    consistencyChecks: Optional[List[ConsistencyCheck27]] = None
+    schemaVersion: Optional[str] = "2022.8.16"
+    """
+    entity's schema version. Used to distinct between different schemas.
+    """
+    isDefault: Optional[bool] = False
+    """
+    Identifies that entity is defaultable
+    """
+    preProcessors: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the pre-processors for this calculation
+    """
+    postProcessors: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the post-processors for this calculation
+    """
+    monitors: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the monitors for this calculation
+    """
+    results: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the results for this calculation
+    """
+
+
+class ExecutionUnitInputIdItemSchemaForPhysicsBasedSimulationEngines(BaseModel):
+    model_config = ConfigDict(
+        extra="forbid",
+    )
+    templateId: Optional[str] = None
+    templateName: Optional[str] = None
+    name: Optional[str] = None
+    """
+    name of the resulting input file, if different than template name
+    """
+
+
+class ConsistencyCheck28(BaseModel):
+    key: str
+    """
+    Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
+    """
+    name: Name
+    """
+    Name of the consistency check that is performed, which is listed in an enum.
+    """
+    severity: Severity
+    """
+    Severity level of the problem, which is used in UI to differentiate.
+    """
+    message: str
+    """
+    Message generated by the consistency check describing the problem.
+    """
+
+
+class FlavorSchema(BaseModel):
+    executableId: Optional[str] = None
+    """
+    _id of the executable this flavor belongs to
+    """
+    executableName: Optional[str] = None
+    """
+    name of the executable this flavor belongs to
+    """
+    applicationName: Optional[str] = None
+    """
+    name of the application this flavor belongs to
+    """
+    input: Optional[List[ExecutionUnitInputIdItemSchemaForPhysicsBasedSimulationEngines]] = Field(
+        None, title="execution unit input schema"
+    )
+    field_id: Optional[str] = Field(None, alias="_id")
+    """
+    entity identity
+    """
+    slug: Optional[str] = None
+    """
+    entity slug
+    """
+    systemName: Optional[str] = None
+    consistencyChecks: Optional[List[ConsistencyCheck28]] = None
+    schemaVersion: Optional[str] = "2022.8.16"
+    """
+    entity's schema version. Used to distinct between different schemas.
+    """
+    name: Optional[str] = None
+    """
+    entity name
+    """
+    isDefault: Optional[bool] = False
+    """
+    Identifies that entity is defaultable
+    """
+    preProcessors: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the pre-processors for this calculation
+    """
+    postProcessors: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the post-processors for this calculation
+    """
+    monitors: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the monitors for this calculation
+    """
+    results: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the results for this calculation
+    """
+
+
+class ExecutionUnitInputItemSchemaForPhysicsBasedSimulationEngines(BaseModel):
+    name: str
+    """
+    Input file name. e.g. pw_scf.in
+    """
+    content: str
+    """
+    Content of the input file. e.g. &CONTROL    calculation='scf' ...
+    """
+
+
+class Status(Enum):
+    idle = "idle"
+    active = "active"
+    warning = "warning"
+    error = "error"
+    finished = "finished"
+
+
+class ConsistencyCheck29(BaseModel):
+    key: str
+    """
+    Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
+    """
+    name: Name
+    """
+    Name of the consistency check that is performed, which is listed in an enum.
+    """
+    severity: Severity
+    """
+    Severity level of the problem, which is used in UI to differentiate.
+    """
+    message: str
+    """
+    Message generated by the consistency check describing the problem.
+    """
+
+
+class StatusTrackItem(BaseModel):
+    trackedAt: float
+    status: str
+    repetition: Optional[float] = None
+
+
+class ExecutionUnitSchemaForPhysicsBasedSimulationEnginesDefinedUsingEspressoAsExample(BaseModel):
+    model_config = ConfigDict(
+        extra="allow",
+    )
+    type: Type
+    """
+    type of the unit
+    """
+    application: ApplicationSchemaBase = Field(..., title="application schema (base)")
+    executable: Optional[ExecutableSchema] = Field(None, title="executable schema")
+    flavor: Optional[FlavorSchema] = Field(None, title="flavor schema")
+    input: List[
+        Union[
+            ExecutionUnitInputItemSchemaForPhysicsBasedSimulationEngines,
+            ExecutionUnitInputIdItemSchemaForPhysicsBasedSimulationEngines,
+        ]
+    ] = Field(..., title="execution unit input schema")
+    """
+    unit input (type to be specified by the application's execution unit)
+    """
+    field_id: Optional[str] = Field(None, alias="_id")
+    """
+    entity identity
+    """
+    isDraft: Optional[bool] = None
+    name: Optional[str] = None
+    """
+    name of the unit. e.g. pw_scf
+    """
+    status: Optional[Status] = None
+    """
+    Status of the unit.
+    """
+    head: Optional[bool] = None
+    """
+    Whether this unit is the first one to be executed.
+    """
+    flowchartId: str
+    """
+    Identity of the unit in the workflow. Used to trace the execution flow of the workflow.
+    """
+    next: Optional[str] = None
+    """
+    Next unit's flowchartId. If empty, the current unit is the last.
+    """
+    enableRender: Optional[bool] = None
+    """
+    Whether Rupy should attempt to use Jinja templating to add context variables into the unit
+    """
+    context: Optional[Dict[str, Any]] = None
+    slug: Optional[str] = None
+    """
+    entity slug
+    """
+    systemName: Optional[str] = None
+    consistencyChecks: Optional[List[ConsistencyCheck29]] = None
+    schemaVersion: Optional[str] = "2022.8.16"
+    """
+    entity's schema version. Used to distinct between different schemas.
+    """
+    isDefault: Optional[bool] = False
+    """
+    Identifies that entity is defaultable
+    """
+    preProcessors: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the pre-processors for this calculation
+    """
+    postProcessors: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the post-processors for this calculation
+    """
+    monitors: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the monitors for this calculation
+    """
+    results: Optional[List[Union[NameResultSchema, str]]] = None
+    """
+    names of the results for this calculation
+    """
+    tags: Optional[List[str]] = None
+    """
+    entity tags
+    """
+    statusTrack: Optional[List[StatusTrackItem]] = None

mat3ra/esse/models/software_directory/modeling/vasp.py

@@ -0,0 +1,117 @@
+# generated by datamodel-codegen:
+#   filename:  software_directory/modeling/vasp.json
+#   version:   0.25.5
+
+from __future__ import annotations
+
+from enum import Enum
+from typing import List, Optional
+
+from pydantic import BaseModel, ConfigDict, Field
+
+
+class Name(Enum):
+    vasp = "vasp"
+
+
+class Summary(Enum):
+    vienna_ab_initio_simulation_package = "vienna ab-initio simulation package"
+
+
+class Flavor(Enum):
+    vasp = "vasp"
+    vasp_nscf = "vasp_nscf"
+    vasp_bands = "vasp_bands"
+
+
+class Version(Enum):
+    field_5_3_5 = "5.3.5"
+
+
+class Exec(Enum):
+    vasp = "vasp"
+
+
+class Name232(Enum):
+    default = "default"
+    atomsTooClose = "atomsTooClose"
+    atomsOverlap = "atomsOverlap"
+
+
+class Severity(Enum):
+    info = "info"
+    warning = "warning"
+    error = "error"
+
+
+class ConsistencyCheck(BaseModel):
+    key: str
+    """
+    Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
+    """
+    name: Name232
+    """
+    Name of the consistency check that is performed, which is listed in an enum.
+    """
+    severity: Severity
+    """
+    Severity level of the problem, which is used in UI to differentiate.
+    """
+    message: str
+    """
+    Message generated by the consistency check describing the problem.
+    """
+
+
+class ViennaAbInitoSimulationPackage(BaseModel):
+    model_config = ConfigDict(
+        extra="allow",
+    )
+    name: Optional[Name] = None
+    """
+    entity name
+    """
+    summary: Optional[Summary] = None
+    """
+    Application's short description.
+    """
+    flavor: Optional[Flavor] = None
+    version: Optional[Version] = None
+    """
+    Application version. e.g. 5.3.5
+    """
+    exec: Optional[Exec] = None
+    shortName: Optional[str] = None
+    """
+    The short name of the application. e.g. qe
+    """
+    build: Optional[str] = None
+    """
+    Application build. e.g. VTST
+    """
+    hasAdvancedComputeOptions: Optional[bool] = None
+    """
+    Whether advanced compute options are present
+    """
+    isLicensed: Optional[bool] = None
+    """
+    Whether licensing is present
+    """
+    field_id: Optional[str] = Field(None, alias="_id")
+    """
+    entity identity
+    """
+    slug: Optional[str] = None
+    """
+    entity slug
+    """
+    systemName: Optional[str] = None
+    consistencyChecks: Optional[List[ConsistencyCheck]] = None
+    schemaVersion: Optional[str] = "2022.8.16"
+    """
+    entity's schema version. Used to distinct between different schemas.
+    """
+    isDefault: Optional[bool] = False
+    """
+    Identifies that entity is defaultable
+    """

mat3ra/esse/models/software_directory/scripting/__init__.py

@@ -0,0 +1,3 @@
+# generated by datamodel-codegen:
+#   filename:  schema
+#   version:   0.25.5

mat3ra/esse/models/software_directory/scripting/jupyter_lab.py

@@ -0,0 +1,115 @@
+# generated by datamodel-codegen:
+#   filename:  software_directory/scripting/jupyter_lab.json
+#   version:   0.25.5
+
+from __future__ import annotations
+
+from enum import Enum
+from typing import List, Optional
+
+from pydantic import BaseModel, ConfigDict, Field
+
+
+class Name(Enum):
+    jupyterLab = "jupyterLab"
+
+
+class Flavor(Enum):
+    notebook = "notebook"
+
+
+class Summary(Enum):
+    Jupyter_Lab = "Jupyter Lab"
+
+
+class Version(Enum):
+    field_0_33_12 = "0.33.12"
+
+
+class Exec(Enum):
+    jupyter = "jupyter"
+
+
+class Name122(Enum):
+    default = "default"
+    atomsTooClose = "atomsTooClose"
+    atomsOverlap = "atomsOverlap"
+
+
+class Severity(Enum):
+    info = "info"
+    warning = "warning"
+    error = "error"
+
+
+class ConsistencyCheck(BaseModel):
+    key: str
+    """
+    Key of the property of the entity on which the consistency check is performed in Mongo dot notation, e.g. 'basis.coordinates.1'
+    """
+    name: Name122
+    """
+    Name of the consistency check that is performed, which is listed in an enum.
+    """
+    severity: Severity
+    """
+    Severity level of the problem, which is used in UI to differentiate.
+    """
+    message: str
+    """
+    Message generated by the consistency check describing the problem.
+    """
+
+
+class JupyterLabApplicationSchema(BaseModel):
+    model_config = ConfigDict(
+        extra="allow",
+    )
+    name: Optional[Name] = None
+    """
+    entity name
+    """
+    flavor: Optional[Flavor] = None
+    summary: Optional[Summary] = None
+    """
+    Application's short description.
+    """
+    version: Optional[Version] = None
+    """
+    Application version. e.g. 5.3.5
+    """
+    exec: Optional[Exec] = None
+    shortName: Optional[str] = None
+    """
+    The short name of the application. e.g. qe
+    """
+    build: Optional[str] = None
+    """
+    Application build. e.g. VTST
+    """
+    hasAdvancedComputeOptions: Optional[bool] = None
+    """
+    Whether advanced compute options are present
+    """
+    isLicensed: Optional[bool] = None
+    """
+    Whether licensing is present
+    """
+    field_id: Optional[str] = Field(None, alias="_id")
+    """
+    entity identity
+    """
+    slug: Optional[str] = None
+    """
+    entity slug
+    """
+    systemName: Optional[str] = None
+    consistencyChecks: Optional[List[ConsistencyCheck]] = None
+    schemaVersion: Optional[str] = "2022.8.16"
+    """
+    entity's schema version. Used to distinct between different schemas.
+    """
+    isDefault: Optional[bool] = False
+    """
+    Identifies that entity is defaultable
+    """