masster 0.5.6__py3-none-any.whl → 0.5.7__py3-none-any.whl

masster/_version.py

@@ -1,7 +1,7 @@
 from __future__ import annotations
 
 
-__version__ = "0.5.6"
+__version__ = "0.5.7"
 
 
 def get_version():

masster/sample/plot.py

@@ -86,8 +86,6 @@ def _process_cmap(cmap, fallback="viridis", logger=None):
         cmap = "viridis"
     elif cmap == "grey":
         cmap = "Greys256"
-    elif cmap == "iridescent":
-        cmap = "iridescent_r"
     
     # If cmap package is not available, fall back to process_cmap
     if Colormap is None:
@@ -455,15 +453,15 @@ def plot_2d(
     show_ms2=False,
     show_in_browser=False,
     title=None,
-    cmap=None,
+    cmap='iridescent',
     marker="circle",
-    markersize=10,
+    markersize=5,
     size="static",
     raster_dynamic=True,
     raster_max_px=8,
     raster_threshold=0.8,
     height=600,
-    width=800,
+    width=750,
     mz_range=None,
     rt_range=None
 ):
@@ -529,7 +527,7 @@ def plot_2d(
         return
 
     # Process colormap using the cmap package
-    cmap_palette = _process_cmap(cmap, fallback="iridescent_r", logger=self.logger)
+    cmap_palette = _process_cmap(cmap, fallback="iridescent", logger=self.logger)
 
     # get columns rt, mz, inty from self.ms1_df, It's polars DataFrame
     spectradf = self.ms1_df.select(["rt", "mz", "inty"])

masster/study/defaults/merge_def.py

@@ -25,7 +25,7 @@ class merge_defaults:
         link_ms2 (bool): Whether to link MS2 spectra to consensus features. Default is True.
     """
 
-    method: str = "kd"
+    method: str = "qt"
     min_samples: int = 2
     rt_tol: float = 5.0
     mz_tol: float = 0.05

{masster-0.5.6.dist-info → masster-0.5.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: masster
-Version: 0.5.6
+Version: 0.5.7
 Summary: Mass spectrometry data analysis package
 Project-URL: homepage, https://github.com/zamboni-lab/masster
 Project-URL: repository, https://github.com/zamboni-lab/masster

{masster-0.5.6.dist-info → masster-0.5.7.dist-info}/RECORD

@@ -1,5 +1,5 @@
 masster/__init__.py,sha256=ueZ224WPNRRjQEYTaQUol818nwQgJwB93HbEfmtPRmg,1041
-masster/_version.py,sha256=rLineW-O0OSBF7JBd31acdcshluNBFss77bXVJCx5BY,256
+masster/_version.py,sha256=ioQa4W_2pWdKSoU7hw7Pn6WMBm3nMuuLKfSR4f8171A,256
 masster/chromatogram.py,sha256=iYpdv8C17zVnlWvOFgAn9ns2uFGiF-GgoYf5QVVAbHs,19319
 masster/logger.py,sha256=tR65N23zfrNpcZNbZm2ot_Aual9XrGB1MWjLrovZkMs,16749
 masster/spectrum.py,sha256=TWIgDcl0lveG40cLVZTWGp8-FxMolu-P8EjZyRBtXL4,49850
@@ -25,7 +25,7 @@ masster/sample/helpers.py,sha256=27eZFFidr02-DlSi4-eF4bpSk_y-qU3eoFCAOshRO20,421
 masster/sample/lib.py,sha256=E-j9c3Wd8f9a-H8xj7CAOwlA8KcyXPoFyYm3c8r7LtI,33755
 masster/sample/load.py,sha256=swjRBCoFGni9iPztHIKPVB5ru_xDMVryB_inPXdujTw,51819
 masster/sample/parameters.py,sha256=Gg2KcuNbV_wZ_Wwv93QlM5J19ji0oSIvZLPV1NoBmq0,4456
-masster/sample/plot.py,sha256=vA37dwmpeymVW8xobrsLhsD7X8x7EQIOw50Csiica84,86675
+masster/sample/plot.py,sha256=-rHqdi6q7jqjS8ENpTlxjwJBMZAwo-6OsNmE_d1JVQk,86617
 masster/sample/processing.py,sha256=CjaLCElDKECeCvYWqzT5EH_-rPQ0Y4A30zKjZfqmS5s,55915
 masster/sample/quant.py,sha256=tHNjvUFTdehKR31BXBZnVsBxMD9XJHgaltITOjr71uE,7562
 masster/sample/sample.py,sha256=VhQik_ev1liRqGUtbZvV1NOjfFzgfZI1orfQT87gai4,20643
@@ -61,14 +61,14 @@ masster/study/defaults/find_ms2_def.py,sha256=RL0DFG41wQ05U8UQKUGr3vzSl3mU0m0knQ
 masster/study/defaults/identify_def.py,sha256=96rxoCAPQj_yX-3mRoD2LTkTLJgG27eJQqwarLv5jL0,10580
 masster/study/defaults/integrate_chrom_def.py,sha256=0MNIWGTjty-Zu-NTQsIweuj3UVqEY3x1x8pK0mPwYak,7264
 masster/study/defaults/integrate_def.py,sha256=Vf4SAzdBfnsSZ3IRaF0qZvWu3gMDPHdgPfMYoPKeWv8,7246
-masster/study/defaults/merge_def.py,sha256=3W13QSZaIzxHTDFifW-Nncu_phIqZgf0TpcllaKwbHE,12978
+masster/study/defaults/merge_def.py,sha256=krR099IkENLlJVxpSjdje3E6h-_qtlc3Ep6Hpy6inrU,12978
 masster/study/defaults/study_def.py,sha256=h8dYbi9xv0sesCSQik49Z53IkskMmNtW6ixl7it5pL0,16033
 masster/wizard/README.md,sha256=mL1A3YWJZOefpJ6D0-HqGLkVRmUlOpwyVFdvJBeeoZM,14149
 masster/wizard/__init__.py,sha256=a2hcZnHASjfuw1lqZhZnvTR58rc33rRnoGAY_JfvGhI,683
 masster/wizard/example.py,sha256=xEZFTH9UZ8HKOm6s3JL8Js0Uw5ChnISWBHSZCL32vsM,7983
 masster/wizard/wizard.py,sha256=UobIGFZtp1s_9WJlpl6DQ2-pp7flPQ6dlYZJqYE92OM,38131
-masster-0.5.6.dist-info/METADATA,sha256=Vbsgbvaxv5TP83vvlXhTlG7vdrkUaN8fvdkSwVil3HY,45113
-masster-0.5.6.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-masster-0.5.6.dist-info/entry_points.txt,sha256=ZHguQ_vPmdbpqq2uGtmEOLJfgP-DQ1T0c07Lxh30wc8,58
-masster-0.5.6.dist-info/licenses/LICENSE,sha256=bx5iLIKjgAdYQ7sISn7DsfHRKkoCUm1154sJJKhgqnU,35184
-masster-0.5.6.dist-info/RECORD,,
+masster-0.5.7.dist-info/METADATA,sha256=DpCKFnXCQ5SXZnw95QXJM1yEpZETz882BwJp5scuvqc,45113
+masster-0.5.7.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+masster-0.5.7.dist-info/entry_points.txt,sha256=ZHguQ_vPmdbpqq2uGtmEOLJfgP-DQ1T0c07Lxh30wc8,58
+masster-0.5.7.dist-info/licenses/LICENSE,sha256=bx5iLIKjgAdYQ7sISn7DsfHRKkoCUm1154sJJKhgqnU,35184
+masster-0.5.7.dist-info/RECORD,,