masster 0.5.17__py3-none-any.whl → 0.5.18__py3-none-any.whl
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- masster/_version.py +1 -1
- masster/sample/adducts.py +12 -0
- masster/sample/defaults/sample_def.py +30 -6
- masster/sample/h5.py +52 -6
- masster/sample/lib.py +9 -3
- masster/sample/load.py +47 -120
- masster/sample/processing.py +1 -1
- masster/sample/sample.py +5 -3
- masster/sample/sciex.py +60 -646
- masster/sample/thermo.py +801 -0
- masster/study/id.py +3 -1
- masster/study/load.py +15 -792
- masster/study/study.py +1 -0
- {masster-0.5.17.dist-info → masster-0.5.18.dist-info}/METADATA +3 -2
- {masster-0.5.17.dist-info → masster-0.5.18.dist-info}/RECORD +18 -17
- {masster-0.5.17.dist-info → masster-0.5.18.dist-info}/WHEEL +0 -0
- {masster-0.5.17.dist-info → masster-0.5.18.dist-info}/entry_points.txt +0 -0
- {masster-0.5.17.dist-info → masster-0.5.18.dist-info}/licenses/LICENSE +0 -0
masster/study/study.py
CHANGED
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@@ -905,6 +905,7 @@ class Study:
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f"Study folder: {self.folder}\n"
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f"Last save: {self.filename}\n"
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f"Samples: {samples_df_len}\n"
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f"Polarity: {self.polarity}\n"
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f"Features: {unfilled_features_count}\n"
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f"- in consensus: {ratio_in_consensus_to_total:.0f}%\n"
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f"- not in consensus: {ratio_not_in_consensus_to_total:.0f}%\n"
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.4
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Name: masster
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Version: 0.5.
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Version: 0.5.18
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Summary: Mass spectrometry data analysis package
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Project-URL: homepage, https://github.com/zamboni-lab/masster
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Project-URL: repository, https://github.com/zamboni-lab/masster
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@@ -747,10 +747,11 @@ pip install masster
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```python
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import masster
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masster.wizard.
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wiz = masster.wizard.create_scripts(
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source=r'..\..\folder_with_raw_data',
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folder=r'..\..folder_to_store_results'
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)
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wiz.run()
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```
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This will run a wizard that should perform all key steps and save the results to the `folder`.
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@@ -1,5 +1,5 @@
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masster/__init__.py,sha256=B7zftzdElF2Wb5B7KvkD6TONnMIY-Jxeen3s49dgmzs,1029
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masster/_version.py,sha256=
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masster/_version.py,sha256=LChZF0OUsgujPZXZ-tTpQID-ZbHbpSgB1NZxEHjVBHc,257
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masster/chromatogram.py,sha256=iYpdv8C17zVnlWvOFgAn9ns2uFGiF-GgoYf5QVVAbHs,19319
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masster/logger.py,sha256=XT2gUcUIct8LWzTp9n484g5MaB89toT76CGA41oBvfA,18375
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masster/spectrum.py,sha256=TWIgDcl0lveG40cLVZTWGp8-FxMolu-P8EjZyRBtXL4,49850
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@@ -19,39 +19,40 @@ masster/data/wiff/2025_01_14_VW_7600_LpMx_DBS_CID_2min_TOP15_030msecMS1_005msecR
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masster/lib/__init__.py,sha256=TcePNx3SYZHz6763TL9Sg4gUNXaRWjlrOtyS6vsu-hg,178
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masster/lib/lib.py,sha256=cDV4bL2Ax0WWZReiTYze0W6XVMTJRC9DMlVYd6piRIs,38934
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masster/sample/__init__.py,sha256=HL0m1ept0PMAYUCQtDDnkdOS12IFl6oLAq4TZQz83uY,170
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masster/sample/adducts.py,sha256=
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masster/sample/h5.py,sha256=
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masster/sample/adducts.py,sha256=SU6S3pyyLQUSg6yPcdj3p4MfwNDsp0_FYwYYb7F4li0,33798
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masster/sample/h5.py,sha256=3cBY9Ta1jC-MQ-To-CPRkGIIQGkksFT8MsHIM3BTtEY,117791
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masster/sample/helpers.py,sha256=Mt9LX-Dy1Xro1a_Sy6nxQzCkP_-q7nK4xVnNm44v7UA,43872
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masster/sample/lib.py,sha256=
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masster/sample/load.py,sha256=
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masster/sample/lib.py,sha256=jrzqvglaCGzZQSSRXEQXYSJ_UTaFMdpSQbWiZd1DJyc,33976
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masster/sample/load.py,sha256=GP8oYICEqHdog9_sFPiBJVwdy7foavVF7g1ffZ729-s,48711
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masster/sample/parameters.py,sha256=Gg2KcuNbV_wZ_Wwv93QlM5J19ji0oSIvZLPV1NoBmq0,4456
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masster/sample/plot.py,sha256=5qn2Cpl363f3hW1ZeI4BZV9_36VLx39PKQMrebJhfp4,104864
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masster/sample/processing.py,sha256=
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masster/sample/processing.py,sha256=2E1MdPoKaBXGhie2ZOZ4EDgH6ZE3tO10VExMhqfjQsQ,56337
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masster/sample/quant.py,sha256=tHNjvUFTdehKR31BXBZnVsBxMD9XJHgaltITOjr71uE,7562
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masster/sample/sample.py,sha256=
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masster/sample/sample.py,sha256=Khhjcd1okZBxVM6bOvGV4ZU-FUagiqgZjkWm3afhECs,22365
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masster/sample/sample5_schema.json,sha256=H5e2T6rHIDzul2kp_yP-ILUUWUpW08wP2pEQjMR0nSk,3977
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masster/sample/save.py,sha256=pbiRoWEA2DnhDKmMJncjveNlBqizJLOVRm5cug4ZwyM,38658
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masster/sample/sciex.py,sha256=
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masster/sample/sciex.py,sha256=mk95h2KIdMwNvKjoAaWfB7osYF6zSdyfSDNh_ft9zTE,21781
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masster/sample/thermo.py,sha256=5Bl4qqGG3CN6tbbY4huXfnRSlK4djaD8azeS854ZeM4,28133
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masster/sample/defaults/__init__.py,sha256=A09AOP44cxD_oYohyt7XFUho0zndRcrzVD4DUaGnKH4,447
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masster/sample/defaults/find_adducts_def.py,sha256=Bu2KiBJRxD0SAnOPNMm_Nk-6fx6QYoRXjFNGzz-0_o0,13570
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masster/sample/defaults/find_features_def.py,sha256=Bcd39uav1BniwKgrsB-I1maF3ljf4Wb1f5yv0pDYfts,17745
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masster/sample/defaults/find_ms2_def.py,sha256=KTELMAnioGLYbhzAwOgK14TZqboPEvzeBN0HC-v0Z5A,9872
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masster/sample/defaults/get_spectrum_def.py,sha256=o62p31PhGd-LiIkTOzKQhwPtnO2AtQDHcPu-O-YoQPs,11460
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masster/sample/defaults/sample_def.py,sha256=
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masster/sample/defaults/sample_def.py,sha256=XJPtQPqgkpaLEng3eqBPznCwcKVPJSw3FC6wNVcEu5E,15460
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masster/study/__init__.py,sha256=55axdFuqRX4aXtJ8ocnhcLB32fNtmmJpCi58moO0r4g,237
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masster/study/analysis.py,sha256=L-wXBnGZCLB5UUDrjIdOiMG9zdej3Tw_SftcEmmTukM,84264
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masster/study/export.py,sha256=c1HJdLAM6Ply0n8f0DjMk4mXd9lOYePr60UJTBksUho,60092
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masster/study/h5.py,sha256=bznE9kKEfLNo0QtbyC6a6snfnR3Zjkx5BcjBNbRVlJ8,99579
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masster/study/helpers.py,sha256=FdvQV-CgQyBhXMqk6_92aKSBsZhJBK4joLxEdKzmuhw,192011
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masster/study/id.py,sha256=
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masster/study/id.py,sha256=GtOyu5vuK8utydpZn-zNjTbHZsEabqAUGrCwVbauzWA,90844
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masster/study/importers.py,sha256=1Oco0yMid_siMMZdK7rQlhS20XikgjBBNAirbTHx5O8,13958
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masster/study/load.py,sha256=
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masster/study/load.py,sha256=EsKpxUuduu-w1TREfHTYxRdEncWTd15h2IwoB3D_nuc,72070
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masster/study/merge.py,sha256=SwrsbcoI6hIuepvTJEFNoXncwMx1XXr6FVOvkSyfIbs,169239
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masster/study/parameters.py,sha256=bTvmcwX9INxzcrEAmTiFH8qeWVhwkvMTZjuP394pz5o,3279
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masster/study/plot.py,sha256=RXuTlL-jpdLn9aRrxNvTrRU8Zr4504pia-BEWYzpSfY,114048
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masster/study/processing.py,sha256=5b8K4tP-Xu1-mhdf0om-m-g65Z9Uz3Dp4UBhuMLh0yU,58627
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masster/study/save.py,sha256=47AP518epJJ9TjaGGyrLKsMsyjIk8_J4ka7bmsnRtFQ,9268
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masster/study/study.py,sha256=
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masster/study/study.py,sha256=Qt1ltc20LRjPvfuwHLX3AGszNAzZG3t7oM0GbS6Ixbc,38891
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masster/study/study5_schema.json,sha256=uLA9TIb5loki87_BEdwSNyPYahwOanacYisXdIK0_Z0,8044
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masster/study/defaults/__init__.py,sha256=m3Z5KXGqsTdh7GjYzZoENERt39yRg0ceVRV1DeCt1P0,610
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masster/study/defaults/align_def.py,sha256=Du0F592ej2einT8kOx8EUs610axSvur8_-6N19O-uJY,10209
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@@ -68,8 +69,8 @@ masster/wizard/README.md,sha256=mL1A3YWJZOefpJ6D0-HqGLkVRmUlOpwyVFdvJBeeoZM,1414
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masster/wizard/__init__.py,sha256=L9G_datyGSFJjrBVklEVpZVLGXzUhDiWobtiygBH8vQ,669
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masster/wizard/example.py,sha256=xEZFTH9UZ8HKOm6s3JL8Js0Uw5ChnISWBHSZCL32vsM,7983
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masster/wizard/wizard.py,sha256=_co4abB8lNNryfqwS3AZtw6TGxw6NLowRjLXTUzJA0o,62994
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masster-0.5.
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masster-0.5.
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masster-0.5.18.dist-info/METADATA,sha256=CIX2SNRG_TsBxRKSatiF-oS6SqdeniyGRj8pqUN1exM,45153
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masster-0.5.18.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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masster-0.5.18.dist-info/entry_points.txt,sha256=ZHguQ_vPmdbpqq2uGtmEOLJfgP-DQ1T0c07Lxh30wc8,58
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masster-0.5.18.dist-info/licenses/LICENSE,sha256=bx5iLIKjgAdYQ7sISn7DsfHRKkoCUm1154sJJKhgqnU,35184
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masster-0.5.18.dist-info/RECORD,,
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