masster 0.4.2__py3-none-any.whl → 0.4.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of masster might be problematic. Click here for more details.

Files changed (23) hide show
  1. masster/_version.py +1 -1
  2. masster/lib/__init__.py +9 -0
  3. masster/lib/lib.py +598 -0
  4. masster/study/helpers.py +103 -8
  5. {masster-0.4.2.dist-info → masster-0.4.3.dist-info}/METADATA +791 -789
  6. {masster-0.4.2.dist-info → masster-0.4.3.dist-info}/RECORD +10 -20
  7. {masster-0.4.2.dist-info → masster-0.4.3.dist-info}/WHEEL +2 -1
  8. masster-0.4.3.dist-info/top_level.txt +1 -0
  9. masster/data/dda/20250530_VH_IQX_KW_RP_HSST3_100mm_12min_pos_v4_DDA_OT_C-MiLUT_QC_dil2_01_20250602151849.sample5 +0 -0
  10. masster/data/dda/20250530_VH_IQX_KW_RP_HSST3_100mm_12min_pos_v4_DDA_OT_C-MiLUT_QC_dil3_01_20250602150634.sample5 +0 -0
  11. masster/data/dda/20250530_VH_IQX_KW_RP_HSST3_100mm_12min_pos_v4_MS1_C-MiLUT_C008_v6_r38_01.sample5 +0 -0
  12. masster/data/dda/20250530_VH_IQX_KW_RP_HSST3_100mm_12min_pos_v4_MS1_C-MiLUT_C008_v7_r37_01.sample5 +0 -0
  13. masster/data/dda/20250530_VH_IQX_KW_RP_HSST3_100mm_12min_pos_v4_MS1_C-MiLUT_C017_v5_r99_01.sample5 +0 -0
  14. masster/data/libs/ccm.csv +0 -120
  15. masster/data/libs/urine.csv +0 -4693
  16. masster/data/wiff/2025_01_14_VW_7600_LpMx_DBS_CID_2min_TOP15_030msecMS1_005msecReac_CE35_DBS-ON_3.timeseries.data +0 -0
  17. masster/data/wiff/2025_01_14_VW_7600_LpMx_DBS_CID_2min_TOP15_030msecMS1_005msecReac_CE35_DBS-ON_3.wiff +0 -0
  18. masster/data/wiff/2025_01_14_VW_7600_LpMx_DBS_CID_2min_TOP15_030msecMS1_005msecReac_CE35_DBS-ON_3.wiff.scan +0 -0
  19. masster/data/wiff/2025_01_14_VW_7600_LpMx_DBS_CID_2min_TOP15_030msecMS1_005msecReac_CE35_DBS-ON_3.wiff2 +0 -0
  20. masster/sample/sample5_schema.json +0 -196
  21. masster/study/study5_schema.json +0 -360
  22. {masster-0.4.2.dist-info → masster-0.4.3.dist-info}/entry_points.txt +0 -0
  23. {masster-0.4.2.dist-info → masster-0.4.3.dist-info}/licenses/LICENSE +0 -0
@@ -1,196 +0,0 @@
1
- {
2
- "features_df": {
3
- "columns": {
4
- "feature_uid": {
5
- "dtype": "pl.Int64"
6
- },
7
- "feature_id": {
8
- "dtype": "pl.Utf8"
9
- },
10
- "sample_uid": {
11
- "dtype": "pl.Int32"
12
- },
13
- "mz": {
14
- "dtype": "pl.Float64"
15
- },
16
- "rt": {
17
- "dtype": "pl.Float64"
18
- },
19
- "rt_original": {
20
- "dtype": "pl.Float64"
21
- },
22
- "rt_start": {
23
- "dtype": "pl.Float64"
24
- },
25
- "rt_end": {
26
- "dtype": "pl.Float64"
27
- },
28
- "rt_delta": {
29
- "dtype": "pl.Float64"
30
- },
31
- "mz_start": {
32
- "dtype": "pl.Float64"
33
- },
34
- "mz_end": {
35
- "dtype": "pl.Float64"
36
- },
37
- "inty": {
38
- "dtype": "pl.Float64"
39
- },
40
- "quality": {
41
- "dtype": "pl.Float64"
42
- },
43
- "charge": {
44
- "dtype": "pl.Int32"
45
- },
46
- "iso": {
47
- "dtype": "pl.Int64"
48
- },
49
- "iso_of": {
50
- "dtype": "pl.Int64"
51
- },
52
- "adduct": {
53
- "dtype": "pl.Utf8"
54
- },
55
- "adduct_charge": {
56
- "dtype": "pl.Int64"
57
- },
58
- "adduct_mass_shift": {
59
- "dtype": "pl.Float64"
60
- },
61
- "adduct_mass_neutral": {
62
- "dtype": "pl.Float64"
63
- },
64
- "adduct_group": {
65
- "dtype": "pl.Int64"
66
- },
67
- "chrom": {
68
- "dtype": "pl.Object"
69
- },
70
- "filled": {
71
- "dtype": "pl.Boolean"
72
- },
73
- "chrom_area": {
74
- "dtype": "pl.Float64"
75
- },
76
- "chrom_coherence": {
77
- "dtype": "pl.Float64"
78
- },
79
- "chrom_prominence": {
80
- "dtype": "pl.Float64"
81
- },
82
- "chrom_prominence_scaled": {
83
- "dtype": "pl.Float64"
84
- },
85
- "chrom_height_scaled": {
86
- "dtype": "pl.Float64"
87
- },
88
- "ms2_scans": {
89
- "dtype": "pl.Object"
90
- },
91
- "ms2_specs": {
92
- "dtype": "pl.Object"
93
- }
94
- }
95
- },
96
- "generated_date": "2025-08-03",
97
- "ms1_df": {
98
- "columns": {
99
- "cycle": {
100
- "dtype": "pl.Int32"
101
- },
102
- "inty": {
103
- "dtype": "pl.Float64"
104
- },
105
- "mz": {
106
- "dtype": "pl.Float64"
107
- },
108
- "rt": {
109
- "dtype": "pl.Float64"
110
- },
111
- "scan_uid": {
112
- "dtype": "pl.Int64"
113
- }
114
- }
115
- },
116
- "scans_df": {
117
- "columns": {
118
- "bl": {
119
- "dtype": "pl.Float64"
120
- },
121
- "comment": {
122
- "dtype": "pl.Utf8"
123
- },
124
- "cycle": {
125
- "dtype": "pl.Int64"
126
- },
127
- "energy": {
128
- "dtype": "pl.Float64"
129
- },
130
- "feature_uid": {
131
- "dtype": "pl.Int64"
132
- },
133
- "id": {
134
- "dtype": "pl.Utf8"
135
- },
136
- "inty_max": {
137
- "dtype": "pl.Float64"
138
- },
139
- "inty_min": {
140
- "dtype": "pl.Float64"
141
- },
142
- "inty_tot": {
143
- "dtype": "pl.Float64"
144
- },
145
- "ms2_n": {
146
- "dtype": "pl.Int64"
147
- },
148
- "ms_level": {
149
- "dtype": "pl.Int64"
150
- },
151
- "mz_max": {
152
- "dtype": "pl.Float64"
153
- },
154
- "mz_min": {
155
- "dtype": "pl.Float64"
156
- },
157
- "name": {
158
- "dtype": "pl.Utf8"
159
- },
160
- "prec_inty": {
161
- "dtype": "pl.Float64"
162
- },
163
- "prec_mz": {
164
- "dtype": "pl.Float64"
165
- },
166
- "prec_mz_max": {
167
- "dtype": "pl.Float64"
168
- },
169
- "prec_mz_min": {
170
- "dtype": "pl.Float64"
171
- },
172
- "rt": {
173
- "dtype": "pl.Float64"
174
- },
175
- "scan_uid": {
176
- "dtype": "pl.Int64"
177
- },
178
- "time_cycle": {
179
- "dtype": "pl.Float64"
180
- },
181
- "time_ms1_to_ms1": {
182
- "dtype": "pl.Float64"
183
- },
184
- "time_ms1_to_ms2": {
185
- "dtype": "pl.Float64"
186
- },
187
- "time_ms2_to_ms1": {
188
- "dtype": "pl.Float64"
189
- },
190
- "time_ms2_to_ms2": {
191
- "dtype": "pl.Float64"
192
- }
193
- }
194
- },
195
- "schema_version": "1.0"
196
- }
@@ -1,360 +0,0 @@
1
- {
2
- "consensus_df": {
3
- "columns": {
4
- "consensus_uid": {
5
- "dtype": "pl.Int64"
6
- },
7
- "consensus_id": {
8
- "dtype": "pl.Utf8"
9
- },
10
- "quality": {
11
- "dtype": "pl.Float64"
12
- },
13
- "number_samples": {
14
- "dtype": "pl.Int64"
15
- },
16
- "rt": {
17
- "dtype": "pl.Float64"
18
- },
19
- "mz": {
20
- "dtype": "pl.Float64"
21
- },
22
- "rt_min": {
23
- "dtype": "pl.Float64"
24
- },
25
- "rt_max": {
26
- "dtype": "pl.Float64"
27
- },
28
- "rt_mean": {
29
- "dtype": "pl.Float64"
30
- },
31
- "rt_start_mean": {
32
- "dtype": "pl.Float64"
33
- },
34
- "rt_end_mean": {
35
- "dtype": "pl.Float64"
36
- },
37
- "rt_delta_mean": {
38
- "dtype": "pl.Float64"
39
- },
40
- "mz_min": {
41
- "dtype": "pl.Float64"
42
- },
43
- "mz_max": {
44
- "dtype": "pl.Float64"
45
- },
46
- "mz_mean": {
47
- "dtype": "pl.Float64"
48
- },
49
- "mz_start_mean": {
50
- "dtype": "pl.Float64"
51
- },
52
- "mz_end_mean": {
53
- "dtype": "pl.Float64"
54
- },
55
- "inty_mean": {
56
- "dtype": "pl.Float64"
57
- },
58
- "bl": {
59
- "dtype": "pl.Float64"
60
- },
61
- "chrom_coherence_mean": {
62
- "dtype": "pl.Float64"
63
- },
64
- "chrom_prominence_mean": {
65
- "dtype": "pl.Float64"
66
- },
67
- "chrom_prominence_scaled_mean": {
68
- "dtype": "pl.Float64"
69
- },
70
- "chrom_height_scaled_mean": {
71
- "dtype": "pl.Float64"
72
- },
73
- "iso_mean": {
74
- "dtype": "pl.Float64"
75
- },
76
- "charge_mean": {
77
- "dtype": "pl.Float64"
78
- },
79
- "number_ms2": {
80
- "dtype": "pl.Int64"
81
- },
82
- "adducts": {
83
- "dtype": "pl.Object"
84
- },
85
- "adduct_charge_top": {
86
- "dtype": "pl.Int64"
87
- },
88
- "adduct_group": {
89
- "dtype": "pl.Int64"
90
- },
91
- "adduct_mass_neutral_top": {
92
- "dtype": "pl.Float64"
93
- },
94
- "adduct_mass_shift_top": {
95
- "dtype": "pl.Float64"
96
- },
97
- "adduct_of": {
98
- "dtype": "pl.Int64"
99
- },
100
- "adduct_top": {
101
- "dtype": "pl.Utf8"
102
- }
103
- }
104
- },
105
- "consensus_mapping_df": {
106
- "columns": {
107
- "consensus_uid": {
108
- "dtype": "pl.Int64"
109
- },
110
- "feature_uid": {
111
- "dtype": "pl.Int64"
112
- },
113
- "sample_uid": {
114
- "dtype": "pl.Int64"
115
- }
116
- }
117
- },
118
- "consensus_ms2": {
119
- "columns": {
120
- "consensus_uid": {
121
- "dtype": "pl.Int64"
122
- },
123
- "energy": {
124
- "dtype": "pl.Float64"
125
- },
126
- "feature_uid": {
127
- "dtype": "pl.Int64"
128
- },
129
- "number_frags": {
130
- "dtype": "pl.Int64"
131
- },
132
- "prec_coherence": {
133
- "dtype": "pl.Float64"
134
- },
135
- "prec_inty": {
136
- "dtype": "pl.Float64"
137
- },
138
- "prec_prominence_scaled": {
139
- "dtype": "pl.Float64"
140
- },
141
- "sample_uid": {
142
- "dtype": "pl.Int64"
143
- },
144
- "scan_id": {
145
- "dtype": "pl.Int64"
146
- },
147
- "spec": {
148
- "dtype": "pl.Object"
149
- }
150
- }
151
- },
152
- "features_df": {
153
- "columns": {
154
- "feature_uid": {
155
- "dtype": "pl.Int64"
156
- },
157
- "feature_id": {
158
- "dtype": "pl.Utf8"
159
- },
160
- "sample_uid": {
161
- "dtype": "pl.Int32"
162
- },
163
- "mz": {
164
- "dtype": "pl.Float64"
165
- },
166
- "rt": {
167
- "dtype": "pl.Float64"
168
- },
169
- "rt_original": {
170
- "dtype": "pl.Float64"
171
- },
172
- "rt_start": {
173
- "dtype": "pl.Float64"
174
- },
175
- "rt_end": {
176
- "dtype": "pl.Float64"
177
- },
178
- "rt_delta": {
179
- "dtype": "pl.Float64"
180
- },
181
- "mz_start": {
182
- "dtype": "pl.Float64"
183
- },
184
- "mz_end": {
185
- "dtype": "pl.Float64"
186
- },
187
- "inty": {
188
- "dtype": "pl.Float64"
189
- },
190
- "quality": {
191
- "dtype": "pl.Float64"
192
- },
193
- "charge": {
194
- "dtype": "pl.Int32"
195
- },
196
- "iso": {
197
- "dtype": "pl.Int64"
198
- },
199
- "iso_of": {
200
- "dtype": "pl.Int64"
201
- },
202
- "adduct": {
203
- "dtype": "pl.Utf8"
204
- },
205
- "adduct_charge": {
206
- "dtype": "pl.Int64"
207
- },
208
- "adduct_mass_shift": {
209
- "dtype": "pl.Float64"
210
- },
211
- "adduct_mass_neutral": {
212
- "dtype": "pl.Float64"
213
- },
214
- "adduct_group": {
215
- "dtype": "pl.Int64"
216
- },
217
- "chrom": {
218
- "dtype": "pl.Object"
219
- },
220
- "filled": {
221
- "dtype": "pl.Boolean"
222
- },
223
- "chrom_area": {
224
- "dtype": "pl.Float64"
225
- },
226
- "chrom_coherence": {
227
- "dtype": "pl.Float64"
228
- },
229
- "chrom_prominence": {
230
- "dtype": "pl.Float64"
231
- },
232
- "chrom_prominence_scaled": {
233
- "dtype": "pl.Float64"
234
- },
235
- "chrom_height_scaled": {
236
- "dtype": "pl.Float64"
237
- },
238
- "ms2_scans": {
239
- "dtype": "pl.Object"
240
- },
241
- "ms2_specs": {
242
- "dtype": "pl.Object"
243
- }
244
- }
245
- },
246
- "samples_df": {
247
- "columns": {
248
- "sample_uid": {
249
- "dtype": "pl.Int64"
250
- },
251
- "map_id": {
252
- "dtype": "pl.Int64"
253
- },
254
- "sample_source": {
255
- "dtype": "pl.Utf8"
256
- },
257
- "sample_name": {
258
- "dtype": "pl.Utf8"
259
- },
260
- "sample_path": {
261
- "dtype": "pl.Utf8"
262
- },
263
- "sample_type": {
264
- "dtype": "pl.Utf8"
265
- },
266
- "sample_group": {
267
- "dtype": "pl.Utf8"
268
- },
269
- "sample_batch": {
270
- "dtype": "pl.Int64"
271
- },
272
- "sample_sequence": {
273
- "dtype": "pl.Int64"
274
- },
275
- "sample_color": {
276
- "dtype": "pl.Utf8"
277
- },
278
- "num_features": {
279
- "dtype": "pl.Int64"
280
- },
281
- "num_ms1": {
282
- "dtype": "pl.Int64"
283
- },
284
- "num_ms2": {
285
- "dtype": "pl.Int64"
286
- }
287
- }
288
- },
289
- "lib_df": {
290
- "columns": {
291
- "lib_uid": {
292
- "dtype": "pl.Int64"
293
- },
294
- "cmpd_uid": {
295
- "dtype": "pl.Int64"
296
- },
297
- "source_id": {
298
- "dtype": "pl.Null"
299
- },
300
- "name": {
301
- "dtype": "pl.String"
302
- },
303
- "smiles": {
304
- "dtype": "pl.String"
305
- },
306
- "inchi": {
307
- "dtype": "pl.String"
308
- },
309
- "inchikey": {
310
- "dtype": "pl.String"
311
- },
312
- "formula": {
313
- "dtype": "pl.String"
314
- },
315
- "adduct": {
316
- "dtype": "pl.String"
317
- },
318
- "m": {
319
- "dtype": "pl.Float64"
320
- },
321
- "z": {
322
- "dtype": "pl.Int64"
323
- },
324
- "mz": {
325
- "dtype": "pl.Float64"
326
- },
327
- "rt": {
328
- "dtype": "pl.Null"
329
- },
330
- "db_id": {
331
- "dtype": "pl.String"
332
- },
333
- "db": {
334
- "dtype": "pl.String"
335
- }
336
- }
337
- },
338
- "id_df": {
339
- "columns": {
340
- "consensus_uid": {
341
- "dtype": "pl.Int64"
342
- },
343
- "lib_uid": {
344
- "dtype": "pl.Int64"
345
- },
346
- "mz_delta": {
347
- "dtype": "pl.Float64"
348
- },
349
- "rt_delta": {
350
- "dtype": "pl.Null"
351
- },
352
- "matcher": {
353
- "dtype": "pl.String"
354
- },
355
- "score": {
356
- "dtype": "pl.Float64"
357
- }
358
- }
359
- }
360
- }