marsilea 0.3.2__py3-none-any.whl → 0.3.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (29) hide show
  1. marsilea/__init__.py +3 -2
  2. marsilea/_api.py +3 -2
  3. marsilea/_deform.py +44 -38
  4. marsilea/base.py +702 -118
  5. marsilea/dataset.py +49 -23
  6. marsilea/dendrogram.py +119 -84
  7. marsilea/exceptions.py +5 -6
  8. marsilea/heatmap.py +85 -25
  9. marsilea/layers.py +77 -69
  10. marsilea/layout.py +132 -102
  11. marsilea/plotter/__init__.py +29 -0
  12. marsilea/plotter/_images.py +37 -7
  13. marsilea/plotter/_seaborn.py +35 -24
  14. marsilea/plotter/_utils.py +3 -2
  15. marsilea/plotter/arc.py +29 -19
  16. marsilea/plotter/area.py +80 -0
  17. marsilea/plotter/bar.py +113 -90
  18. marsilea/plotter/base.py +76 -49
  19. marsilea/plotter/bio.py +40 -30
  20. marsilea/plotter/mesh.py +184 -88
  21. marsilea/plotter/text.py +303 -194
  22. marsilea/upset.py +229 -151
  23. marsilea/utils.py +23 -10
  24. {marsilea-0.3.2.dist-info → marsilea-0.3.3.dist-info}/LICENSE +1 -1
  25. marsilea-0.3.3.dist-info/METADATA +74 -0
  26. marsilea-0.3.3.dist-info/RECORD +27 -0
  27. marsilea-0.3.2.dist-info/METADATA +0 -50
  28. marsilea-0.3.2.dist-info/RECORD +0 -26
  29. {marsilea-0.3.2.dist-info → marsilea-0.3.3.dist-info}/WHEEL +0 -0
{marsilea-0.3.2.dist-info → marsilea-0.3.3.dist-info}/LICENSE RENAMED
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  The MIT License (MIT)
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- Copyright (c) 2023 Mr-Milk
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+ Copyright (c) 2024 Mr-Milk
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  Permission is hereby granted, free of charge, to any person obtaining a copy
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  of this software and associated documentation files (the "Software"), to deal
marsilea-0.3.3.dist-info/METADATA ADDED
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+ Metadata-Version: 2.1
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+ Name: marsilea
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+ Version: 0.3.3
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+ Summary: Create x-layout visualization
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+ Author: Zhihang Zheng
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+ Author-email: Mr-Milk <yzheng@cemm.at>
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+ Requires-Python: >=3.8
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+ Description-Content-Type: text/markdown
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+ Classifier: License :: OSI Approved :: MIT License
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+ Requires-Dist: numpy
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+ Requires-Dist: pandas
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+ Requires-Dist: matplotlib>=3.6
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+ Requires-Dist: seaborn
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+ Requires-Dist: scipy
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+ Requires-Dist: legendkit
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+ Requires-Dist: platformdirs
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+ Requires-Dist: ruff ; extra == "dev"
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+ Requires-Dist: icecream ; extra == "dev"
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+ Requires-Dist: python-hmr ; extra == "dev"
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+ Requires-Dist: pytest ; extra == "dev"
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+ Requires-Dist: scikit-learn ; extra == "dev"
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+ Requires-Dist: sphinx ; extra == "dev"
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+ Requires-Dist: numpydoc ; extra == "dev"
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+ Requires-Dist: sphinx_design ; extra == "dev"
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+ Requires-Dist: pydata-sphinx-theme ; extra == "dev"
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+ Requires-Dist: sphinx-copybutton ; extra == "dev"
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+ Requires-Dist: sphinx_gallery ; extra == "dev"
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+ Requires-Dist: mpl_fontkit ; extra == "dev"
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+ Project-URL: Home, https://github.com/Marsilea-viz/marsilea
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+ Provides-Extra: dev
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+
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+ <p align="center">
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+ <picture align="center">
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+ <source media="(prefers-color-scheme: dark)" srcset="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-dark.jpg">
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+ <source media="(prefers-color-scheme: light)" srcset="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-blue.jpg">
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+ <img alt="Shows a bar chart with benchmark results." src="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-dark.jpg" width="400">
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+ </picture>
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+ </p>
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+
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+ [![Documentation Status](https://img.shields.io/readthedocs/marsilea?color=57B77E&logo=readthedocs&logoColor=white&style=flat-square)](https://marsilea.readthedocs.io/en/stable)
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+ ![pypi version](https://img.shields.io/pypi/v/marsilea?color=0098FF&logo=python&logoColor=white&style=flat-square)
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+
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+ ❗We are in beta, API may change and bugs expected
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+
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+ ### Declarative creation of composable visualization!
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+ [Read Documentation](https://marsilea.readthedocs.io/)
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+
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+ ### Installation
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+
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+ ```shell
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+ pip install marsilea
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+ ```
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+
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+ [//]: # (### Examples)
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+
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+ [//]: # ()
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+ [//]: # (| | |)
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+
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+ [//]: # (|-----------------------------------------------------------------------------------------------------------------|---------------------------------------------------------------------------------------------------------------|)
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+
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+ [//]: # (| Heatmap | Oncoprint |)
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+
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+ [//]: # (| <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_pbmc3k_001_2_00x.png" width=400> | <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_oncoprint_005_2_00x.png" width=400> |)
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+
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+ [//]: # (| Upsetplot | Composition Stacked Bar |)
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+
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+ [//]: # (| <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_upset_001_2_00x.png" width=400> | <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_oil_well_001_2_00x.png" width=400> |)
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+
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+ [//]: # (| Arc Diagram | Protein sequence alignment |)
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+
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+ [//]: # (| <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_arc_diagram_001_2_00x.png" width=400> | <img src="https://marsilea.readthedocs.io/en/latest/_images/sphx_glr_plot_seqalign_001_2_00x.png" width=400> |)
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+
marsilea-0.3.3.dist-info/RECORD ADDED
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+ marsilea/__init__.py,sha256=xgLPjY3onsVFvFuqNclgBCu1mnbLdstf0yXZ2zrT1rs,456
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+ marsilea/_api.py,sha256=tymWZHfjhx8-0NNd9762znfdIu36NrARRweEIr5L1mA,283
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+ marsilea/_deform.py,sha256=SKXLvhyUrwTRAw7Fl--OpupDLk6T3S5DRfwCAdewHQs,14138
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+ marsilea/base.py,sha256=yxnuHZMa7xFBC0eerp4zkiQY5Mn1SsIK32B4TUwhuI4,44608
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+ marsilea/dataset.py,sha256=a0mXjPu9_tRGHofnnQaTryFpxftkfqldq_ZLXMSBf7A,4410
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+ marsilea/dendrogram.py,sha256=WUnV2JMSY9mPt1sfkFAEikkl2ta7xHFD13teas_iZgE,14767
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+ marsilea/exceptions.py,sha256=Wxy31eCWkoXTPwqaa7R5F7cJ3uCtzqhJXmxVqqX8eAA,661
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+ marsilea/heatmap.py,sha256=lKGt0lTtziNFDsb_SBfFt3zoYzVYRzezc9aae5RxHyk,4168
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+ marsilea/layers.py,sha256=my_QcvKGsIu4BV6yKpUUs5v4bdAz915tmS-q48_rEGg,12134
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+ marsilea/layout.py,sha256=X8MGPlAbbr7dcZiqW4pI7sEb8U3jVaiS7t1DKOqMYLI,27758
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+ marsilea/upset.py,sha256=12ExZ6yUQocd3bSLYtizEblJgILn_QCQaoeP-SP2q9E,30138
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+ marsilea/utils.py,sha256=IaAaOBdE668XuGiA-k_gmOtHYqfpIxPv_-molMSBPfs,2851
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+ marsilea/plotter/__init__.py,sha256=aEN-Yta4USY5_l-D97XYySALEgxMmFieA08DzK3xdB4,737
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+ marsilea/plotter/_images.py,sha256=BC9iyWBLVY-nmUW1pSZq06pwHZN1MrW2psMIDreLReg,3062
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+ marsilea/plotter/_seaborn.py,sha256=wC2sqVokSsk_uqYkjtg6HNrsifawLwqsQoDgJWIkSPs,7834
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+ marsilea/plotter/_utils.py,sha256=Efhdk-TrrAanhbXRiEVWThMYvZ4vVHZMVYMs5X3JvIM,710
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+ marsilea/plotter/arc.py,sha256=iBAvQeYLMNaXsykkpE6BJN1CTaBNntlfispFV2LvSUE,8102
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+ marsilea/plotter/area.py,sha256=BYqi522L5h5fy5fmnI2_GZEzKR7NE2QFBJpMySmohT4,2244
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+ marsilea/plotter/bar.py,sha256=jbWukeTkUSge_TLC3ikJeg7GLHG4WuyN6EwIERvh0sc,11976
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+ marsilea/plotter/base.py,sha256=Kzp0474WlXQse5jK4kLPtkVQLH9zpEwYNocV4c0CD-A,19621
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+ marsilea/plotter/bio.py,sha256=_pZkGoAei7eirFCpu7AcZJhebBneNjUKcZlI36bpqUE,5044
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+ marsilea/plotter/mesh.py,sha256=JctVkK5xjsUnRjX2ik3ntL-k-Didi7OAUfdmgkZu6IQ,23116
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+ marsilea/plotter/text.py,sha256=oYJ5py3_nGHKi60DSVzFgPg4drnTSTw__IcYs0cut4M,36222
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+ marsilea-0.3.3.dist-info/LICENSE,sha256=2TLD8FnLJqXzg8YBRs7W3VZBwfWfp4ArDfBl-rn96Qc,1074
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+ marsilea-0.3.3.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
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+ marsilea-0.3.3.dist-info/METADATA,sha256=3ey_r3Hu6oNLTT1RvARf5aGE-oDQcIckaoeO3nkTE34,3971
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+ marsilea-0.3.3.dist-info/RECORD,,
marsilea-0.3.2.dist-info/METADATA DELETED
@@ -1,50 +0,0 @@
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- Metadata-Version: 2.1
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- Name: marsilea
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- Version: 0.3.2
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- Summary: Create x-layout visualization
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- Author: Zhihang Zheng
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- Author-email: Mr-Milk <yb97643@um.edu.mo>
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- Requires-Python: >=3.8
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- Description-Content-Type: text/markdown
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- Classifier: License :: OSI Approved :: MIT License
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- Requires-Dist: numpy
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- Requires-Dist: pandas
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- Requires-Dist: matplotlib>=3.6
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- Requires-Dist: seaborn
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- Requires-Dist: scipy
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- Requires-Dist: legendkit
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- Requires-Dist: platformdirs
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- Requires-Dist: ruff ; extra == "dev"
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- Requires-Dist: icecream ; extra == "dev"
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- Requires-Dist: python-hmr ; extra == "dev"
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- Requires-Dist: pytest ; extra == "dev"
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- Requires-Dist: scikit-learn ; extra == "dev"
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- Requires-Dist: sphinx ; extra == "dev"
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- Requires-Dist: numpydoc ; extra == "dev"
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- Requires-Dist: sphinx_design ; extra == "dev"
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- Requires-Dist: pydata-sphinx-theme ; extra == "dev"
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- Requires-Dist: sphinx-copybutton ; extra == "dev"
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- Project-URL: Home, https://github.com/marsilea/marsilea
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- Provides-Extra: dev
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-
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- <p align="center">
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- <img src="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-blue.jpg#gh-light-mode-only" width="500">
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- <img src="https://github.com/Marsilea-viz/marsilea/raw/main/img/banner-dark.jpg#gh-dark-mode-only" width="500">
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- </p>
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-
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- [![Documentation Status](https://img.shields.io/readthedocs/marsilea?color=57B77E&logo=readthedocs&logoColor=white&style=flat-square)](https://marsilea.readthedocs.io/en/stable)
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- ![pypi version](https://img.shields.io/pypi/v/marsilea?color=0098FF&logo=python&logoColor=white&style=flat-square)
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-
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- ❗We are in beta, API may change and bugs expected
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-
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- ### Create x-layout visualization!
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-
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- [Read Documentation](https://marsilea.readthedocs.io/)
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-
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-
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- ### Installation
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-
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- ```shell
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- pip install marsilea
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- ```
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-
marsilea-0.3.2.dist-info/RECORD DELETED
@@ -1,26 +0,0 @@
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- marsilea/__init__.py,sha256=HuFssQKZgyp993Vh7vJupVG9KUVdBylpaxVzQ5LTdnU,398
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- marsilea/_api.py,sha256=txHnWiKWrQTm2CXB2t3_3F6xFuwi7-95N5cJ5s6xD5o,282
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- marsilea/_deform.py,sha256=I8Oh5ug8o0KNJRIxsfL7mBrqjHrkkOoZftT6GQg8gJM,14231
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- marsilea/base.py,sha256=iEW2N4QbwHcDApniTNdcmu0tdTkUKfM-09-TuAnYIt8,28408
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- marsilea/dataset.py,sha256=8EgpuVfc-R10tjMleBHGn4Ndv7E-4IxKswlz2kDIfUI,3786
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- marsilea/dendrogram.py,sha256=bYYC71MNv8DUIbuFkPDC7G7b1ZXEjJ09eX4tgt_hZa4,14620
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- marsilea/exceptions.py,sha256=9PQGXvhcrs0p43YnTX0T8OPqrIQL9cGK_C1U0b_L9Y4,650
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- marsilea/heatmap.py,sha256=HU2eX0rvCer0l1DcDRKBABig9dc3oLyMK1vgJNKZCag,3565
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- marsilea/layers.py,sha256=axS_QFNjni8DzGjb1hDL7oyj_w90j0RBXU5CyZ_RR8w,12273
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- marsilea/layout.py,sha256=jP1X7J4DaLtsiNZc2TCsIH7QsGv1DdPYVUf3JJLR8iI,27715
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- marsilea/upset.py,sha256=UDyCRQ2Db8itwy57cbYsuKmuGPenr57sQx_yfDvJD7w,30106
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- marsilea/utils.py,sha256=mVWExS7Bm_SzqLBLlkbZBzmrB2tNrJLO_cQ7N31LPTE,2820
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- marsilea/plotter/__init__.py,sha256=Og-b5LDBhe7h0VZ-m9zbaGzzdwCnbx8zrzTy8cApOdY,320
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- marsilea/plotter/_images.py,sha256=xjEegaONfeMq0CBXGitHQfXdzVHt31hFV8S6leKcac8,2028
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- marsilea/plotter/_seaborn.py,sha256=bZf2eVoCGzWg3q8RguQJ6_Og_qv5FRVVs6Ek3Kaj7NE,7548
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- marsilea/plotter/_utils.py,sha256=ehYHVZOUA3R5v8gE2ysaIdyiM6to_0GGrMDhb-g_xlk,683
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- marsilea/plotter/arc.py,sha256=7epdsdxxawE0V2EIQEPxBE0LvnXCAqYx2dS-c0sIUV4,8059
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- marsilea/plotter/bar.py,sha256=XnLrF8EtTrmSC7YJBalTcVmh7X3CCw9Q-HcJc9hYblk,12321
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- marsilea/plotter/base.py,sha256=xhABfFpUbjAwVuj4FljDdYjFzm10eKyXDHVH6wMLnRY,19071
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- marsilea/plotter/bio.py,sha256=Q7EgghHwqtMmXrEEBKZk4TTOjW8kq6hylmUwMf07mt8,5115
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- marsilea/plotter/mesh.py,sha256=tw9yAn5b6kZWq4d_BGXUvDeU8LIluYgAsZnWqaRkUzA,22316
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- marsilea/plotter/text.py,sha256=-H247bkol0fjPAE3GsWgpT5q4XaVo2UcirCF7FtLjEI,35155
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- marsilea-0.3.2.dist-info/LICENSE,sha256=UwNW8x-13BDuItvInfX2c0O_9TUp6vC9bjt8lsHqm5w,1074
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- marsilea-0.3.2.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
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- marsilea-0.3.2.dist-info/METADATA,sha256=4gt3Dw7-sDR6T0U7bv6nqpsK8fYfOOcPFsRvun5x1Eo,1701
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- marsilea-0.3.2.dist-info/RECORD,,