mapFolding 0.3.3__py3-none-any.whl → 0.3.4__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- citations/updateCitation.py +67 -0
- {mapFolding-0.3.3.dist-info → mapFolding-0.3.4.dist-info}/METADATA +3 -1
- mapFolding-0.3.4.dist-info/RECORD +26 -0
- {mapFolding-0.3.3.dist-info → mapFolding-0.3.4.dist-info}/top_level.txt +1 -0
- someAssemblyRequired/__init__.py +1 -1
- someAssemblyRequired/generalizeSourceCode.py +12 -11
- someAssemblyRequired/makeJob.py +3 -1
- someAssemblyRequired/synthesizeModules.py +109 -17
- syntheticModules/countInitialize.py +44 -41
- syntheticModules/countParallel.py +46 -43
- syntheticModules/countSequential.py +6 -3
- mapFolding-0.3.3.dist-info/RECORD +0 -25
- {mapFolding-0.3.3.dist-info → mapFolding-0.3.4.dist-info}/WHEEL +0 -0
- {mapFolding-0.3.3.dist-info → mapFolding-0.3.4.dist-info}/entry_points.txt +0 -0
- /someAssemblyRequired/{synthesizeJob.py → synthesizeModuleJob.py} +0 -0
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from cffconvert.cli.create_citation import create_citation
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from typing import Any, Dict
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import cffconvert
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import pathlib
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import tomli
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import inspect
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import json
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"""
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Tentative plan:
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- Commit and push to GitHub
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- GitHub Action gathers information from the sources of truth
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- If the citation needs to be updated, write to both
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- pathFilenameCitationSSOT
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- pathFilenameCitationDOTcffRepo
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- Commit and push to GitHub
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- this complicates things
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- I want the updated citation to be in the `commit` field of itself
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"""
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"""cffconvert.Citation fields and the source of truth
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abstract: pathFilenameCitationSSOT
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authors: pathFilenamePackageSSOT
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cff-version: pathFilenameCitationSSOT
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commit: workflows['Make GitHub Release']
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contact: pathFilenamePackageSSOT
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date-released: workflows['Make GitHub Release']
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doi: pathFilenameCitationSSOT
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identifiers: workflows['Make GitHub Release']
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keywords: pathFilenamePackageSSOT
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license: pathFilenamePackageSSOT
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license-url: pathFilenamePackageSSOT
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message: pathFilenameCitationSSOT
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preferred-citation: pathFilenameCitationSSOT
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references: to be determined
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repository: pathFilenamePackageSSOT
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repository-artifact: (https://pypi.org/pypi/{package_name}/json').json()['releases']
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repository-code: workflows['Make GitHub Release']
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title: pathFilenamePackageSSOT
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type: pathFilenameCitationSSOT
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url: pathFilenamePackageSSOT
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version: pathFilenamePackageSSOT
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"""
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# Prefer reliable, dynamic values over hardcoded ones
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packageName: str = 'mapFolding'
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pathRepoRoot = pathlib.Path(__file__).parent.parent.parent
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pathFilenamePackageSSOT = pathRepoRoot / 'pyproject.toml'
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filenameGitHubAction = 'updateCitation.yml'
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pathFilenameGitHubAction = pathRepoRoot / '.github' / 'workflows' / filenameGitHubAction
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filenameCitationDOTcff = 'CITATION.cff'
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pathCitations = pathRepoRoot / packageName / 'citations'
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pathFilenameCitationSSOT = pathCitations / filenameCitationDOTcff
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pathFilenameCitationDOTcffRepo = pathRepoRoot / filenameCitationDOTcff
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tomlPackageData: Dict[str, Any] = tomli.loads(pathFilenamePackageSSOT.read_text())['project']
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citationObject: cffconvert.Citation = create_citation(infile=pathFilenameCitationSSOT, url=None)
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path_cffconvert = pathlib.Path(inspect.getfile(cffconvert)).parent
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pathFilenameSchema = path_cffconvert / "schemas/1.2.0/schema.json"
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scheme: Dict[str, Any] = json.loads(pathFilenameSchema.read_text())
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schemaSpecifications: Dict[str, Any] = scheme['properties']
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for property, subProperties in schemaSpecifications.items():
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print(property, subProperties.get('items', None))
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.2
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Name: mapFolding
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Version: 0.3.
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Version: 0.3.4
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Summary: Count distinct ways to fold a map (or a strip of stamps)
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Author-email: Hunter Hogan <HunterHogan@pm.me>
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License: CC-BY-NC-4.0
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@@ -29,12 +29,14 @@ Requires-Dist: jupyter; extra == "benchmark"
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Requires-Dist: pandas; extra == "benchmark"
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Requires-Dist: tqdm; extra == "benchmark"
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Provides-Extra: testing
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Requires-Dist: cffconvert; extra == "testing"
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Requires-Dist: more_itertools; extra == "testing"
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Requires-Dist: pytest; extra == "testing"
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Requires-Dist: pytest-cov; extra == "testing"
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Requires-Dist: pytest-env; extra == "testing"
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Requires-Dist: pytest-xdist; extra == "testing"
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Requires-Dist: python_minifier; extra == "testing"
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Requires-Dist: tomli; extra == "testing"
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# Algorithm(s) for counting distinct ways to fold a map (or a strip of stamps)
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benchmarks/benchmarking.py,sha256=HD_0NSvuabblg94ftDre6LFnXShTe8MYj3hIodW-zV0,3076
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citations/updateCitation.py,sha256=3AUPo9_4SfH8AwQBMRl7KygAXoMRjQSqFl3ERWxtrtk,2541
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reference/flattened.py,sha256=6blZ2Y9G8mu1F3gV8SKndPE398t2VVFlsgKlyeJ765A,16538
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reference/hunterNumba.py,sha256=HWndRgsajOf76rbb2LDNEZ6itsdYbyV-k3wgOFjeR6c,7104
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reference/irvineJavaPort.py,sha256=Sj-63Z-OsGuDoEBXuxyjRrNmmyl0d7Yz_XuY7I47Oyg,4250
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reference/jax.py,sha256=rojyK80lOATtbzxjGOHWHZngQa47CXCLJHZwIdN2MwI,14955
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reference/lunnan.py,sha256=XEcql_gxvCCghb6Or3qwmPbn4IZUbZTaSmw_fUjRxZE,5037
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reference/lunnanNumpy.py,sha256=HqDgSwTOZA-G0oophOEfc4zs25Mv4yw2aoF1v8miOLk,4653
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reference/lunnanWhile.py,sha256=7NY2IKO5XBgol0aWWF_Fi-7oTL9pvu_z6lB0TF1uVHk,4063
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reference/rotatedEntryPoint.py,sha256=z0QyDQtnMvXNj5ntWzzJUQUMFm1-xHGLVhtYzwmczUI,11530
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reference/total_countPlus1vsPlusN.py,sha256=usenM8Yn_G1dqlPl7NKKkcnbohBZVZBXTQRm2S3_EDA,8106
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someAssemblyRequired/__init__.py,sha256=7iODZE6dM4h52spgivUvAuVsvYdSx-_YcSTz1gX82Vw,89
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someAssemblyRequired/generalizeSourceCode.py,sha256=qyJD0ZdG0t-SYTItL_JjaIXm3-joWt3e-2nMSAH4Dbg,6392
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someAssemblyRequired/getLLVMforNoReason.py,sha256=FtJzw2pZS3A4NimWdZsegXaU-vKeCw8m67kcfb5wvGM,894
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someAssemblyRequired/makeJob.py,sha256=iaLjr-FhFloTF6wSuwOpurgpqJulZht9CxNo9MDidbg,949
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someAssemblyRequired/synthesizeModuleJob.py,sha256=xLak-ZZ1zQ92jBobhJqbnA1Fua9ofiRvLdK1fmD8s_s,7271
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someAssemblyRequired/synthesizeModules.py,sha256=JGOx69DGCcCntRtw7aOXXcmERCHqVyhFo1oiKh3P8Mg,8842
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syntheticModules/__init__.py,sha256=nDtS5UFMKN-F5pTp0qKA0J0I-XR3n3OFxV2bosieBu8,131
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syntheticModules/countInitialize.py,sha256=QqKfQxCmUJuJutNxOZ0VfqYEHnuk7XSkCYx7RKz3kn4,4239
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syntheticModules/countParallel.py,sha256=77JzO3TsccjSUJRExZ0Nxdqowd_Sm0_2bRziVx5XMI4,5355
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syntheticModules/countSequential.py,sha256=QixgcN9R5zcrmJjxSO4oOCYViWogA35HbDNlni9hw8o,3655
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mapFolding-0.3.4.dist-info/METADATA,sha256=v8MJLZBzqS2hBp4trsRjjLzn8RAsddUPg16IiI9J1cg,7617
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mapFolding-0.3.4.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
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mapFolding-0.3.4.dist-info/entry_points.txt,sha256=F3OUeZR1XDTpoH7k3wXuRb3KF_kXTTeYhu5AGK1SiOQ,146
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mapFolding-0.3.4.dist-info/top_level.txt,sha256=yVG9dNZywoaddcsUdEDg7o0XOBzJd_4Z-sDaXGHpiMY,69
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mapFolding-0.3.4.dist-info/RECORD,,
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someAssemblyRequired/__init__.py
CHANGED
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from .makeJob import makeStateJob
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from .generalizeSourceCode import makeInlineFunction
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# from .generalizeSourceCode import makeInlineFunction
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from mapFolding import datatypeLargeDEFAULT, datatypeMediumDEFAULT, datatypeSmallDEFAULT
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from typing import Dict, Optional, List, Set, Union
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import ast
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class RecursiveInlinerWithEnum(ast.NodeTransformer):
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"""Process AST nodes to inline functions and substitute enum values.
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Also handles function decorators during inlining."""
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def __init__(self, dictionaryFunctions, dictionaryEnumValues):
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def __init__(self, dictionaryFunctions: Dict[str, ast.FunctionDef], dictionaryEnumValues: Dict[str, int]) -> None:
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self.dictionaryFunctions = dictionaryFunctions
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self.dictionaryEnumValues = dictionaryEnumValues
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self.processed = set()
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def inlineFunctionBody(self, functionName):
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def inlineFunctionBody(self, functionName: str) -> Optional[ast.FunctionDef]:
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if functionName in self.processed:
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return None
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self.visit(node)
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return inlineDefinition
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def visit_Attribute(self, node):
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def visit_Attribute(self, node: ast.Attribute) -> ast.AST:
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# Substitute enum identifiers (e.g., indexMy.leaf1ndex.value)
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if isinstance(node.value, ast.Attribute) and isinstance(node.value.value, ast.Name):
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enumPath = f"{node.value.value.id}.{node.value.attr}.{node.attr}"
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return self.generic_visit(node)
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def visit_Call(self, node):
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def visit_Call(self, node: ast.Call) -> ast.AST:
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callNode = self.generic_visit(node)
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if isinstance(callNode, ast.Call) and isinstance(callNode.func, ast.Name) and callNode.func.id in self.dictionaryFunctions:
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inlineDefinition = self.inlineFunctionBody(callNode.func.id)
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return self.visit(lastStmt.value)
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elif isinstance(lastStmt, ast.Expr) and lastStmt.value is not None:
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return self.visit(lastStmt.value)
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return None
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return ast.Constant(value=None)
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return callNode
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def visit_Expr(self, node: ast.Expr) -> Union[ast.AST, List[ast.AST]]:
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def findRequiredImports(node):
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def findRequiredImports(node: ast.AST) -> Set[str]:
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"""Find all modules that need to be imported based on AST analysis.
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NOTE: due to hardcoding, this is a glorified regex. No, wait, this is less versatile than regex."""
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def visit_Name(self, node: ast.Name) -> None:
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def visitDecorator(self, node: ast.AST) -> None:
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def generateImports(requiredImports: Set[str]) -> str:
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def makeInlineFunction(sourceCode, targetFunctionName, dictionaryEnumValues, skipEnum=False, **keywordArguments):
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def makeInlineFunction(sourceCode: str, targetFunctionName: str, dictionaryEnumValues: Dict[str, int], skipEnum: bool=False, **keywordArguments: Optional[str]):
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someAssemblyRequired/makeJob.py
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stateUniversal = outfitCountFolds(listDimensions, computationDivisions=None, CPUlimit=None, **keywordArguments)
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from syntheticModules import countInitialize
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countInitialize(stateUniversal['connectionGraph'], stateUniversal['gapsWhere'], stateUniversal['my'], stateUniversal['track'])
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pathFilenameChopChop = getPathFilenameFoldsTotal(stateUniversal['mapShape'])
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from mapFolding import indexMy, indexTrack, getAlgorithmSource
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from mapFolding import indexMy, indexTrack, getAlgorithmSource, ParametersNumba, parametersNumbaDEFAULT, hackSSOTdtype
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from someAssemblyRequired import makeInlineFunction
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import numpy
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import numba
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from typing import Dict, Optional, List, Set, Union, Sequence
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algorithmSource = getAlgorithmSource()
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def __init__(self, dictionaryFunctions: Dict[str, ast.FunctionDef]):
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def inlineFunctionBody(self, functionName: str) -> Optional[ast.FunctionDef]:
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+
return None
|
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20
|
+
|
|
21
|
+
self.processed.add(functionName)
|
|
22
|
+
inlineDefinition = self.dictionaryFunctions[functionName]
|
|
23
|
+
# Recursively process the function body
|
|
24
|
+
for node in ast.walk(inlineDefinition):
|
|
25
|
+
self.visit(node)
|
|
26
|
+
return inlineDefinition
|
|
27
|
+
|
|
28
|
+
def visit_Call(self, node: ast.Call) -> ast.AST:
|
|
29
|
+
callNode = self.generic_visit(node)
|
|
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|
+
if isinstance(callNode, ast.Call) and isinstance(callNode.func, ast.Name) and callNode.func.id in self.dictionaryFunctions:
|
|
31
|
+
inlineDefinition = self.inlineFunctionBody(callNode.func.id)
|
|
32
|
+
if (inlineDefinition and inlineDefinition.body):
|
|
33
|
+
lastStmt = inlineDefinition.body[-1]
|
|
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|
+
if isinstance(lastStmt, ast.Return) and lastStmt.value is not None:
|
|
35
|
+
return self.visit(lastStmt.value)
|
|
36
|
+
elif isinstance(lastStmt, ast.Expr) and lastStmt.value is not None:
|
|
37
|
+
return self.visit(lastStmt.value)
|
|
38
|
+
return ast.Constant(value=None)
|
|
39
|
+
return callNode
|
|
40
|
+
|
|
41
|
+
def visit_Expr(self, node: ast.Expr) -> Union[ast.AST, List[ast.AST]]:
|
|
42
|
+
if isinstance(node.value, ast.Call):
|
|
43
|
+
if isinstance(node.value.func, ast.Name) and node.value.func.id in self.dictionaryFunctions:
|
|
44
|
+
inlineDefinition = self.inlineFunctionBody(node.value.func.id)
|
|
45
|
+
if inlineDefinition:
|
|
46
|
+
return [self.visit(stmt) for stmt in inlineDefinition.body]
|
|
47
|
+
return self.generic_visit(node)
|
|
48
|
+
|
|
49
|
+
def decorateCallableWithNumba(astCallable: ast.FunctionDef, parallel: bool=False, **keywordArguments: Optional[str]):
|
|
50
|
+
def makeNumbaParameterSignatureElement(signatureElement: ast.arg):
|
|
51
|
+
if isinstance(signatureElement.annotation, ast.Subscript) and isinstance(signatureElement.annotation.slice, ast.Tuple):
|
|
52
|
+
|
|
53
|
+
annotationShape = signatureElement.annotation.slice.elts[0]
|
|
54
|
+
if isinstance(annotationShape, ast.Subscript) and isinstance(annotationShape.slice, ast.Tuple):
|
|
55
|
+
shapeAsListSlices = [ast.Slice() for axis in range(len(annotationShape.slice.elts))]
|
|
56
|
+
shapeAsListSlices[-1] = ast.Slice(step=ast.Constant(value=1))
|
|
57
|
+
shapeAST = ast.Tuple(elts=shapeAsListSlices, ctx=ast.Load())
|
|
58
|
+
else:
|
|
59
|
+
shapeAST = ast.Slice(step=ast.Constant(value=1))
|
|
60
|
+
|
|
61
|
+
annotationDtype = signatureElement.annotation.slice.elts[1]
|
|
62
|
+
if isinstance(annotationDtype, ast.Subscript) and isinstance(annotationDtype.slice, ast.Attribute):
|
|
63
|
+
datatypeAST = annotationDtype.slice.attr
|
|
64
|
+
else:
|
|
65
|
+
datatypeAST = None
|
|
66
|
+
|
|
67
|
+
ndarrayName = signatureElement.arg
|
|
68
|
+
Z0Z_hackyStr = hackSSOTdtype[ndarrayName]
|
|
69
|
+
Z0Z_hackyStr = Z0Z_hackyStr[0] + 'ata' + Z0Z_hackyStr[1:]
|
|
70
|
+
datatype_attr = keywordArguments.get(Z0Z_hackyStr, None) or datatypeAST or eval(Z0Z_hackyStr+'DEFAULT')
|
|
71
|
+
|
|
72
|
+
datatypeNumba = ast.Attribute(value=ast.Name(id='numba', ctx=ast.Load()), attr=datatype_attr, ctx=ast.Load())
|
|
73
|
+
|
|
74
|
+
return ast.Subscript(value=datatypeNumba, slice=shapeAST, ctx=ast.Load())
|
|
75
|
+
|
|
76
|
+
# callableSourceDecorators = [decorator for decorator in callableInlined.decorator_list]
|
|
77
|
+
|
|
78
|
+
listNumbaParameterSignature: List[ast.Subscript] = []
|
|
79
|
+
for parameter in astCallable.args.args:
|
|
80
|
+
signatureElement = makeNumbaParameterSignatureElement(parameter)
|
|
81
|
+
if signatureElement:
|
|
82
|
+
listNumbaParameterSignature.append(signatureElement)
|
|
83
|
+
|
|
84
|
+
astArgsNumbaSignature = ast.Tuple(elts=listNumbaParameterSignature, ctx=ast.Load())
|
|
85
|
+
|
|
86
|
+
parametersNumba = parametersNumbaDEFAULT if not parallel else ParametersNumba({**parametersNumbaDEFAULT, 'parallel': True})
|
|
87
|
+
listKeywordsNumbaSignature = [ast.keyword(arg=parameterName, value=ast.Constant(value=parameterValue)) for parameterName, parameterValue in parametersNumba.items()]
|
|
88
|
+
|
|
89
|
+
astDecoratorNumba = ast.Call(func=ast.Attribute(value=ast.Name(id='numba', ctx=ast.Load()), attr='jit', ctx=ast.Load()), args=[astArgsNumbaSignature], keywords=listKeywordsNumbaSignature)
|
|
90
|
+
|
|
91
|
+
astCallable.decorator_list = [astDecoratorNumba]
|
|
92
|
+
return astCallable
|
|
93
|
+
|
|
94
|
+
def getDictionaryEnumValues() -> Dict[str, int]:
|
|
10
95
|
dictionaryEnumValues = {}
|
|
11
96
|
for enumIndex in [indexMy, indexTrack]:
|
|
12
97
|
for memberName, memberValue in enumIndex._member_map_.items():
|
|
13
98
|
dictionaryEnumValues[f"{enumIndex.__name__}.{memberName}.value"] = memberValue.value
|
|
14
99
|
return dictionaryEnumValues
|
|
15
100
|
|
|
16
|
-
def unpackArrays(codeInlined: str
|
|
101
|
+
def unpackArrays(codeInlined: str) -> str:
|
|
17
102
|
dictionaryReplaceScalars = {
|
|
18
103
|
'my[indexMy.dimensionsTotal.value]': 'dimensionsTotal',
|
|
19
104
|
'my[indexMy.dimensionsUnconstrained.value]': 'dimensionsUnconstrained',
|
|
@@ -54,25 +139,32 @@ def unpackArrays(codeInlined: str, callableTarget: str) -> str:
|
|
|
54
139
|
|
|
55
140
|
return codeInlined
|
|
56
141
|
|
|
57
|
-
def inlineMapFoldingNumba(**keywordArguments):
|
|
58
|
-
datatypeLarge = keywordArguments.get('datatypeLarge', datatypeLargeDEFAULT)
|
|
59
|
-
datatypeMedium = keywordArguments.get('datatypeMedium', datatypeMediumDEFAULT)
|
|
60
|
-
datatypeSmall = keywordArguments.get('datatypeSmall', datatypeSmallDEFAULT)
|
|
142
|
+
def inlineMapFoldingNumba(**keywordArguments: Optional[str]):
|
|
61
143
|
dictionaryEnumValues = getDictionaryEnumValues()
|
|
62
144
|
codeSource = inspect.getsource(algorithmSource)
|
|
63
145
|
pathFilenameAlgorithm = pathlib.Path(inspect.getfile(algorithmSource))
|
|
64
146
|
|
|
65
|
-
listCallables = [ 'countInitialize', 'countParallel', 'countSequential', ]
|
|
66
|
-
|
|
67
147
|
listPathFilenamesDestination: list[pathlib.Path] = []
|
|
148
|
+
listCallables = [ 'countInitialize', 'countParallel', 'countSequential', ]
|
|
68
149
|
for callableTarget in listCallables:
|
|
69
|
-
|
|
70
|
-
|
|
71
|
-
|
|
72
|
-
|
|
73
|
-
|
|
74
|
-
|
|
75
|
-
|
|
150
|
+
codeParsed: ast.Module = ast.parse(codeSource, type_comments=True)
|
|
151
|
+
codeSourceImportStatements = {statement for statement in codeParsed.body if isinstance(statement, (ast.Import, ast.ImportFrom))}
|
|
152
|
+
dictionaryFunctions = {statement.name: statement for statement in codeParsed.body if isinstance(statement, ast.FunctionDef)}
|
|
153
|
+
callableInlinerWorkhorse = RecursiveInliner(dictionaryFunctions)
|
|
154
|
+
parallel = callableTarget == 'countParallel'
|
|
155
|
+
callableInlined = callableInlinerWorkhorse.inlineFunctionBody(callableTarget)
|
|
156
|
+
if callableInlined:
|
|
157
|
+
ast.fix_missing_locations(callableInlined)
|
|
158
|
+
callableDecorated = decorateCallableWithNumba(callableInlined, parallel, **keywordArguments)
|
|
159
|
+
|
|
160
|
+
importsRequired = "\n".join([ast.unparse(importStatement) for importStatement in codeSourceImportStatements])
|
|
161
|
+
callableInlined = ast.unparse(callableDecorated)
|
|
162
|
+
codeUnpacked = unpackArrays(callableInlined) if callableTarget == 'countSequential' else callableInlined
|
|
163
|
+
# inlinedCode = ast.unparse(ast.Module(body=[nodeInlined], type_ignores=[]))
|
|
164
|
+
|
|
165
|
+
pathFilenameDestination = pathFilenameAlgorithm.parent / "syntheticModules" / pathFilenameAlgorithm.with_stem(callableTarget).name
|
|
166
|
+
pathFilenameDestination.write_text(importsRequired + "\n" + codeUnpacked)
|
|
167
|
+
listPathFilenamesDestination.append(pathFilenameDestination)
|
|
76
168
|
|
|
77
169
|
if __name__ == '__main__':
|
|
78
170
|
inlineMapFoldingNumba()
|
|
@@ -1,44 +1,47 @@
|
|
|
1
|
-
from
|
|
1
|
+
from numpy import integer
|
|
2
2
|
import numba
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
|
|
6
|
-
|
|
7
|
-
|
|
8
|
-
|
|
9
|
-
|
|
10
|
-
|
|
11
|
-
|
|
12
|
-
|
|
3
|
+
import numpy
|
|
4
|
+
from mapFolding import indexMy, indexTrack
|
|
5
|
+
from typing import Any, Tuple
|
|
6
|
+
@numba.jit((numba.uint8[:, :, ::1], numba.uint8[::1], numba.uint8[::1], numba.uint8[:, ::1]), _nrt=True, boundscheck=False, cache=True, error_model='numpy', fastmath=True, forceinline=False, inline='never', looplift=False, no_cfunc_wrapper=True, no_cpython_wrapper=True, nopython=True, parallel=False)
|
|
7
|
+
def countInitialize(connectionGraph: numpy.ndarray[Tuple[int, int, int], numpy.dtype[integer[Any]]], gapsWhere: numpy.ndarray[Tuple[int], numpy.dtype[integer[Any]]], my: numpy.ndarray[Tuple[int], numpy.dtype[integer[Any]]], track: numpy.ndarray[Tuple[int, int], numpy.dtype[integer[Any]]]):
|
|
8
|
+
while my[indexMy.leaf1ndex.value] > 0:
|
|
9
|
+
if my[indexMy.leaf1ndex.value] <= 1 or track[indexTrack.leafBelow.value, 0] == 1:
|
|
10
|
+
my[indexMy.dimensionsUnconstrained.value] = my[indexMy.dimensionsTotal.value]
|
|
11
|
+
my[indexMy.gap1ndexCeiling.value] = track[indexTrack.gapRangeStart.value, my[indexMy.leaf1ndex.value] - 1]
|
|
12
|
+
my[indexMy.indexDimension.value] = 0
|
|
13
|
+
while my[indexMy.indexDimension.value] < my[indexMy.dimensionsTotal.value]:
|
|
14
|
+
if connectionGraph[my[indexMy.indexDimension.value], my[indexMy.leaf1ndex.value], my[indexMy.leaf1ndex.value]] == my[indexMy.leaf1ndex.value]:
|
|
15
|
+
my[indexMy.dimensionsUnconstrained.value] -= 1
|
|
13
16
|
else:
|
|
14
|
-
my[
|
|
15
|
-
while my[
|
|
16
|
-
gapsWhere[my[
|
|
17
|
-
if track[
|
|
18
|
-
my[
|
|
19
|
-
track[
|
|
20
|
-
my[
|
|
21
|
-
my[
|
|
22
|
-
if not my[
|
|
23
|
-
my[
|
|
24
|
-
while my[
|
|
25
|
-
gapsWhere[my[
|
|
26
|
-
my[
|
|
27
|
-
my[
|
|
28
|
-
my[
|
|
29
|
-
while my[
|
|
30
|
-
gapsWhere[my[
|
|
31
|
-
if track[
|
|
32
|
-
my[
|
|
33
|
-
track[
|
|
34
|
-
my[
|
|
35
|
-
if my[
|
|
36
|
-
my[
|
|
37
|
-
track[
|
|
38
|
-
track[
|
|
39
|
-
track[
|
|
40
|
-
track[
|
|
41
|
-
track[
|
|
42
|
-
my[
|
|
43
|
-
if my[
|
|
17
|
+
my[indexMy.leafConnectee.value] = connectionGraph[my[indexMy.indexDimension.value], my[indexMy.leaf1ndex.value], my[indexMy.leaf1ndex.value]]
|
|
18
|
+
while my[indexMy.leafConnectee.value] != my[indexMy.leaf1ndex.value]:
|
|
19
|
+
gapsWhere[my[indexMy.gap1ndexCeiling.value]] = my[indexMy.leafConnectee.value]
|
|
20
|
+
if track[indexTrack.countDimensionsGapped.value, my[indexMy.leafConnectee.value]] == 0:
|
|
21
|
+
my[indexMy.gap1ndexCeiling.value] += 1
|
|
22
|
+
track[indexTrack.countDimensionsGapped.value, my[indexMy.leafConnectee.value]] += 1
|
|
23
|
+
my[indexMy.leafConnectee.value] = connectionGraph[my[indexMy.indexDimension.value], my[indexMy.leaf1ndex.value], track[indexTrack.leafBelow.value, my[indexMy.leafConnectee.value]]]
|
|
24
|
+
my[indexMy.indexDimension.value] += 1
|
|
25
|
+
if not my[indexMy.dimensionsUnconstrained.value]:
|
|
26
|
+
my[indexMy.indexLeaf.value] = 0
|
|
27
|
+
while my[indexMy.indexLeaf.value] < my[indexMy.leaf1ndex.value]:
|
|
28
|
+
gapsWhere[my[indexMy.gap1ndexCeiling.value]] = my[indexMy.indexLeaf.value]
|
|
29
|
+
my[indexMy.gap1ndexCeiling.value] += 1
|
|
30
|
+
my[indexMy.indexLeaf.value] += 1
|
|
31
|
+
my[indexMy.indexMiniGap.value] = my[indexMy.gap1ndex.value]
|
|
32
|
+
while my[indexMy.indexMiniGap.value] < my[indexMy.gap1ndexCeiling.value]:
|
|
33
|
+
gapsWhere[my[indexMy.gap1ndex.value]] = gapsWhere[my[indexMy.indexMiniGap.value]]
|
|
34
|
+
if track[indexTrack.countDimensionsGapped.value, gapsWhere[my[indexMy.indexMiniGap.value]]] == my[indexMy.dimensionsUnconstrained.value]:
|
|
35
|
+
my[indexMy.gap1ndex.value] += 1
|
|
36
|
+
track[indexTrack.countDimensionsGapped.value, gapsWhere[my[indexMy.indexMiniGap.value]]] = 0
|
|
37
|
+
my[indexMy.indexMiniGap.value] += 1
|
|
38
|
+
if my[indexMy.leaf1ndex.value] > 0:
|
|
39
|
+
my[indexMy.gap1ndex.value] -= 1
|
|
40
|
+
track[indexTrack.leafAbove.value, my[indexMy.leaf1ndex.value]] = gapsWhere[my[indexMy.gap1ndex.value]]
|
|
41
|
+
track[indexTrack.leafBelow.value, my[indexMy.leaf1ndex.value]] = track[indexTrack.leafBelow.value, track[indexTrack.leafAbove.value, my[indexMy.leaf1ndex.value]]]
|
|
42
|
+
track[indexTrack.leafBelow.value, track[indexTrack.leafAbove.value, my[indexMy.leaf1ndex.value]]] = my[indexMy.leaf1ndex.value]
|
|
43
|
+
track[indexTrack.leafAbove.value, track[indexTrack.leafBelow.value, my[indexMy.leaf1ndex.value]]] = my[indexMy.leaf1ndex.value]
|
|
44
|
+
track[indexTrack.gapRangeStart.value, my[indexMy.leaf1ndex.value]] = my[indexMy.gap1ndex.value]
|
|
45
|
+
my[indexMy.leaf1ndex.value] += 1
|
|
46
|
+
if my[indexMy.gap1ndex.value] > 0:
|
|
44
47
|
return
|
|
@@ -1,51 +1,54 @@
|
|
|
1
|
-
from
|
|
1
|
+
from numpy import integer
|
|
2
|
+
from typing import Any, Tuple
|
|
2
3
|
import numba
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
|
|
4
|
+
from mapFolding import indexMy, indexTrack
|
|
5
|
+
import numpy
|
|
6
|
+
@numba.jit((numba.uint8[:, :, ::1], numba.int64[::1], numba.uint8[::1], numba.uint8[::1], numba.uint8[:, ::1]), _nrt=True, boundscheck=False, cache=True, error_model='numpy', fastmath=True, forceinline=False, inline='never', looplift=False, no_cfunc_wrapper=True, no_cpython_wrapper=True, nopython=True, parallel=True)
|
|
7
|
+
def countParallel(connectionGraph: numpy.ndarray[Tuple[int, int, int], numpy.dtype[integer[Any]]], foldGroups: numpy.ndarray[Tuple[int], numpy.dtype[integer[Any]]], gapsWherePARALLEL: numpy.ndarray[Tuple[int], numpy.dtype[integer[Any]]], myPARALLEL: numpy.ndarray[Tuple[int], numpy.dtype[integer[Any]]], trackPARALLEL: numpy.ndarray[Tuple[int, int], numpy.dtype[integer[Any]]]):
|
|
8
|
+
for indexSherpa in numba.prange(myPARALLEL[indexMy.taskDivisions.value]):
|
|
6
9
|
gapsWhere = gapsWherePARALLEL.copy()
|
|
7
10
|
my = myPARALLEL.copy()
|
|
8
|
-
my[
|
|
11
|
+
my[indexMy.taskIndex.value] = indexSherpa
|
|
9
12
|
track = trackPARALLEL.copy()
|
|
10
13
|
groupsOfFolds: int = 0
|
|
11
|
-
while my[
|
|
12
|
-
if my[
|
|
13
|
-
if my[
|
|
14
|
+
while my[indexMy.leaf1ndex.value] > 0:
|
|
15
|
+
if my[indexMy.leaf1ndex.value] <= 1 or track[indexTrack.leafBelow.value, 0] == 1:
|
|
16
|
+
if my[indexMy.leaf1ndex.value] > foldGroups[-1]:
|
|
14
17
|
groupsOfFolds = groupsOfFolds + 1
|
|
15
18
|
else:
|
|
16
|
-
my[
|
|
17
|
-
my[
|
|
18
|
-
my[
|
|
19
|
-
while my[
|
|
20
|
-
if connectionGraph[my[
|
|
21
|
-
my[
|
|
19
|
+
my[indexMy.dimensionsUnconstrained.value] = my[indexMy.dimensionsTotal.value]
|
|
20
|
+
my[indexMy.gap1ndexCeiling.value] = track[indexTrack.gapRangeStart.value, my[indexMy.leaf1ndex.value] - 1]
|
|
21
|
+
my[indexMy.indexDimension.value] = 0
|
|
22
|
+
while my[indexMy.indexDimension.value] < my[indexMy.dimensionsTotal.value]:
|
|
23
|
+
if connectionGraph[my[indexMy.indexDimension.value], my[indexMy.leaf1ndex.value], my[indexMy.leaf1ndex.value]] == my[indexMy.leaf1ndex.value]:
|
|
24
|
+
my[indexMy.dimensionsUnconstrained.value] -= 1
|
|
22
25
|
else:
|
|
23
|
-
my[
|
|
24
|
-
while my[
|
|
25
|
-
if my[
|
|
26
|
-
gapsWhere[my[
|
|
27
|
-
if track[
|
|
28
|
-
my[
|
|
29
|
-
track[
|
|
30
|
-
my[
|
|
31
|
-
my[
|
|
32
|
-
my[
|
|
33
|
-
while my[
|
|
34
|
-
gapsWhere[my[
|
|
35
|
-
if track[
|
|
36
|
-
my[
|
|
37
|
-
track[
|
|
38
|
-
my[
|
|
39
|
-
while my[
|
|
40
|
-
my[
|
|
41
|
-
track[
|
|
42
|
-
track[
|
|
43
|
-
if my[
|
|
44
|
-
my[
|
|
45
|
-
track[
|
|
46
|
-
track[
|
|
47
|
-
track[
|
|
48
|
-
track[
|
|
49
|
-
track[
|
|
50
|
-
my[
|
|
51
|
-
foldGroups[my[
|
|
26
|
+
my[indexMy.leafConnectee.value] = connectionGraph[my[indexMy.indexDimension.value], my[indexMy.leaf1ndex.value], my[indexMy.leaf1ndex.value]]
|
|
27
|
+
while my[indexMy.leafConnectee.value] != my[indexMy.leaf1ndex.value]:
|
|
28
|
+
if my[indexMy.leaf1ndex.value] != my[indexMy.taskDivisions.value] or my[indexMy.leafConnectee.value] % my[indexMy.taskDivisions.value] == my[indexMy.taskIndex.value]:
|
|
29
|
+
gapsWhere[my[indexMy.gap1ndexCeiling.value]] = my[indexMy.leafConnectee.value]
|
|
30
|
+
if track[indexTrack.countDimensionsGapped.value, my[indexMy.leafConnectee.value]] == 0:
|
|
31
|
+
my[indexMy.gap1ndexCeiling.value] += 1
|
|
32
|
+
track[indexTrack.countDimensionsGapped.value, my[indexMy.leafConnectee.value]] += 1
|
|
33
|
+
my[indexMy.leafConnectee.value] = connectionGraph[my[indexMy.indexDimension.value], my[indexMy.leaf1ndex.value], track[indexTrack.leafBelow.value, my[indexMy.leafConnectee.value]]]
|
|
34
|
+
my[indexMy.indexDimension.value] += 1
|
|
35
|
+
my[indexMy.indexMiniGap.value] = my[indexMy.gap1ndex.value]
|
|
36
|
+
while my[indexMy.indexMiniGap.value] < my[indexMy.gap1ndexCeiling.value]:
|
|
37
|
+
gapsWhere[my[indexMy.gap1ndex.value]] = gapsWhere[my[indexMy.indexMiniGap.value]]
|
|
38
|
+
if track[indexTrack.countDimensionsGapped.value, gapsWhere[my[indexMy.indexMiniGap.value]]] == my[indexMy.dimensionsUnconstrained.value]:
|
|
39
|
+
my[indexMy.gap1ndex.value] += 1
|
|
40
|
+
track[indexTrack.countDimensionsGapped.value, gapsWhere[my[indexMy.indexMiniGap.value]]] = 0
|
|
41
|
+
my[indexMy.indexMiniGap.value] += 1
|
|
42
|
+
while my[indexMy.leaf1ndex.value] > 0 and my[indexMy.gap1ndex.value] == track[indexTrack.gapRangeStart.value, my[indexMy.leaf1ndex.value] - 1]:
|
|
43
|
+
my[indexMy.leaf1ndex.value] -= 1
|
|
44
|
+
track[indexTrack.leafBelow.value, track[indexTrack.leafAbove.value, my[indexMy.leaf1ndex.value]]] = track[indexTrack.leafBelow.value, my[indexMy.leaf1ndex.value]]
|
|
45
|
+
track[indexTrack.leafAbove.value, track[indexTrack.leafBelow.value, my[indexMy.leaf1ndex.value]]] = track[indexTrack.leafAbove.value, my[indexMy.leaf1ndex.value]]
|
|
46
|
+
if my[indexMy.leaf1ndex.value] > 0:
|
|
47
|
+
my[indexMy.gap1ndex.value] -= 1
|
|
48
|
+
track[indexTrack.leafAbove.value, my[indexMy.leaf1ndex.value]] = gapsWhere[my[indexMy.gap1ndex.value]]
|
|
49
|
+
track[indexTrack.leafBelow.value, my[indexMy.leaf1ndex.value]] = track[indexTrack.leafBelow.value, track[indexTrack.leafAbove.value, my[indexMy.leaf1ndex.value]]]
|
|
50
|
+
track[indexTrack.leafBelow.value, track[indexTrack.leafAbove.value, my[indexMy.leaf1ndex.value]]] = my[indexMy.leaf1ndex.value]
|
|
51
|
+
track[indexTrack.leafAbove.value, track[indexTrack.leafBelow.value, my[indexMy.leaf1ndex.value]]] = my[indexMy.leaf1ndex.value]
|
|
52
|
+
track[indexTrack.gapRangeStart.value, my[indexMy.leaf1ndex.value]] = my[indexMy.gap1ndex.value]
|
|
53
|
+
my[indexMy.leaf1ndex.value] += 1
|
|
54
|
+
foldGroups[my[indexMy.taskIndex.value]] = groupsOfFolds
|
|
@@ -1,7 +1,10 @@
|
|
|
1
|
-
from
|
|
1
|
+
from numpy import integer
|
|
2
|
+
from typing import Any, Tuple
|
|
2
3
|
import numba
|
|
3
|
-
|
|
4
|
-
|
|
4
|
+
from mapFolding import indexMy, indexTrack
|
|
5
|
+
import numpy
|
|
6
|
+
@numba.jit((numba.uint8[:, :, ::1], numba.int64[::1], numba.uint8[::1], numba.uint8[::1], numba.uint8[:, ::1]), _nrt=True, boundscheck=False, cache=True, error_model='numpy', fastmath=True, forceinline=False, inline='never', looplift=False, no_cfunc_wrapper=True, no_cpython_wrapper=True, nopython=True, parallel=False)
|
|
7
|
+
def countSequential(connectionGraph: numpy.ndarray[Tuple[int, int, int], numpy.dtype[integer[Any]]], foldGroups: numpy.ndarray[Tuple[int], numpy.dtype[integer[Any]]], gapsWhere: numpy.ndarray[Tuple[int], numpy.dtype[integer[Any]]], my: numpy.ndarray[Tuple[int], numpy.dtype[integer[Any]]], track: numpy.ndarray[Tuple[int, int], numpy.dtype[integer[Any]]]):
|
|
5
8
|
doFindGaps = True
|
|
6
9
|
dimensionsTotal = my[indexMy.dimensionsTotal.value]
|
|
7
10
|
dimensionsUnconstrained = my[indexMy.dimensionsUnconstrained.value]
|
|
@@ -1,25 +0,0 @@
|
|
|
1
|
-
benchmarks/benchmarking.py,sha256=HD_0NSvuabblg94ftDre6LFnXShTe8MYj3hIodW-zV0,3076
|
|
2
|
-
reference/flattened.py,sha256=6blZ2Y9G8mu1F3gV8SKndPE398t2VVFlsgKlyeJ765A,16538
|
|
3
|
-
reference/hunterNumba.py,sha256=HWndRgsajOf76rbb2LDNEZ6itsdYbyV-k3wgOFjeR6c,7104
|
|
4
|
-
reference/irvineJavaPort.py,sha256=Sj-63Z-OsGuDoEBXuxyjRrNmmyl0d7Yz_XuY7I47Oyg,4250
|
|
5
|
-
reference/jax.py,sha256=rojyK80lOATtbzxjGOHWHZngQa47CXCLJHZwIdN2MwI,14955
|
|
6
|
-
reference/lunnan.py,sha256=XEcql_gxvCCghb6Or3qwmPbn4IZUbZTaSmw_fUjRxZE,5037
|
|
7
|
-
reference/lunnanNumpy.py,sha256=HqDgSwTOZA-G0oophOEfc4zs25Mv4yw2aoF1v8miOLk,4653
|
|
8
|
-
reference/lunnanWhile.py,sha256=7NY2IKO5XBgol0aWWF_Fi-7oTL9pvu_z6lB0TF1uVHk,4063
|
|
9
|
-
reference/rotatedEntryPoint.py,sha256=z0QyDQtnMvXNj5ntWzzJUQUMFm1-xHGLVhtYzwmczUI,11530
|
|
10
|
-
reference/total_countPlus1vsPlusN.py,sha256=usenM8Yn_G1dqlPl7NKKkcnbohBZVZBXTQRm2S3_EDA,8106
|
|
11
|
-
someAssemblyRequired/__init__.py,sha256=iZpBslk8OnCmaUoqAivva7Hl7GJYrjwRV_owcBbgfcM,87
|
|
12
|
-
someAssemblyRequired/generalizeSourceCode.py,sha256=6LsUe-5uqGXcrtXWrP70BrUgnjkJKrQo8y1KyFZdb-k,6024
|
|
13
|
-
someAssemblyRequired/getLLVMforNoReason.py,sha256=FtJzw2pZS3A4NimWdZsegXaU-vKeCw8m67kcfb5wvGM,894
|
|
14
|
-
someAssemblyRequired/makeJob.py,sha256=W85W7vWsNsu9mBsgU3Cx-FPYIdLLnyzR4GwdcYsWZv4,947
|
|
15
|
-
someAssemblyRequired/synthesizeJob.py,sha256=xLak-ZZ1zQ92jBobhJqbnA1Fua9ofiRvLdK1fmD8s_s,7271
|
|
16
|
-
someAssemblyRequired/synthesizeModules.py,sha256=yR9oFsZe3sbgDe2XoS9MbaIqNz-hOq6qOFzHMhPn4rc,3737
|
|
17
|
-
syntheticModules/__init__.py,sha256=nDtS5UFMKN-F5pTp0qKA0J0I-XR3n3OFxV2bosieBu8,131
|
|
18
|
-
syntheticModules/countInitialize.py,sha256=rRn1gtR1PWxpQ8Mw-_QRZT7ujRP_1H04QizJE9RlZ7o,1839
|
|
19
|
-
syntheticModules/countParallel.py,sha256=aZQvSEeWeJ-47eyMyIisq1baAAl-H6W0RYIlVPv_D_U,2559
|
|
20
|
-
syntheticModules/countSequential.py,sha256=Uf1Zd-r3wsmVoHOWyNOQQiFO6k6xmFG6Oo3dqwAqBQo,3216
|
|
21
|
-
mapFolding-0.3.3.dist-info/METADATA,sha256=SfukFXyZtDIdmQ4Gzgl8ePyov_factyZ4Te7LSh0UYc,7530
|
|
22
|
-
mapFolding-0.3.3.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
|
|
23
|
-
mapFolding-0.3.3.dist-info/entry_points.txt,sha256=F3OUeZR1XDTpoH7k3wXuRb3KF_kXTTeYhu5AGK1SiOQ,146
|
|
24
|
-
mapFolding-0.3.3.dist-info/top_level.txt,sha256=tZHrMCdFq5ghJY_MAv_GhcpmQecelcIcoxgzLnF1-V4,59
|
|
25
|
-
mapFolding-0.3.3.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|
|
File without changes
|