mapFolding 0.17.0__py3-none-any.whl → 0.18.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (245) hide show
  1. easyRun/NOTcountingFolds.py +16 -10
  2. easyRun/__init__.py +1 -0
  3. easyRun/countFolds.py +17 -9
  4. easyRun/meanders.py +6 -8
  5. mapFolding/__init__.py +24 -35
  6. mapFolding/_e/Z0Z_analysisPython/SORTZ0Z_hypothesis.py +189 -0
  7. mapFolding/_e/Z0Z_analysisPython/SORTZ0Z_p2d6.py +143 -0
  8. mapFolding/_e/Z0Z_analysisPython/__init__.py +4 -0
  9. mapFolding/_e/Z0Z_analysisPython/exclusionData/__init__.py +0 -0
  10. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/270/200.py +369 -0
  11. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/270/2001.py +694 -0
  12. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/270/200/344/270/211.py +514 -0
  13. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/270/200/344/270/2111.py +480 -0
  14. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/270/200/344/272/214.py +511 -0
  15. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/270/200/344/272/2141.py +515 -0
  16. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/270/200/344/272/214/344/270/211.py +485 -0
  17. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/270/200/344/272/214/344/270/2111.py +442 -0
  18. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/270/211.py +313 -0
  19. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/270/2111.py +343 -0
  20. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/272/214.py +400 -0
  21. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/272/2141.py +497 -0
  22. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/272/214/344/270/211.py +463 -0
  23. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/344/272/214/344/270/2111.py +441 -0
  24. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266.py +35 -0
  25. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/2661.py +35 -0
  26. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/270/200.py +382 -0
  27. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/270/2001.py +630 -0
  28. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/270/200/344/270/211.py +488 -0
  29. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/270/200/344/270/2111.py +475 -0
  30. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/270/200/344/272/214.py +473 -0
  31. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/270/200/344/272/2141.py +500 -0
  32. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/270/200/344/272/214/344/270/211.py +465 -0
  33. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/270/200/344/272/214/344/270/2111.py +439 -0
  34. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/270/211.py +599 -0
  35. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/270/2111.py +536 -0
  36. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/272/214.py +506 -0
  37. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/272/2141.py +533 -0
  38. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/272/214/344/270/211.py +489 -0
  39. mapFolding/_e/Z0Z_analysisPython/exclusionData/aggregated/351/246/226/351/233/266/344/272/214/344/270/2111.py +474 -0
  40. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200.py +1186 -0
  41. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/2001.py +2158 -0
  42. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/2001Negative.py +2158 -0
  43. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200Negative.py +1186 -0
  44. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/270/211.py +1397 -0
  45. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/270/2111.py +1291 -0
  46. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/270/2111Negative.py +1291 -0
  47. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/270/211Negative.py +1397 -0
  48. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/272/214.py +1240 -0
  49. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/272/2141.py +1420 -0
  50. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/272/2141Negative.py +1420 -0
  51. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/272/214Negative.py +1240 -0
  52. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/272/214/344/270/211.py +1366 -0
  53. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/272/214/344/270/2111.py +1274 -0
  54. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/272/214/344/270/2111Negative.py +1274 -0
  55. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/200/344/272/214/344/270/211Negative.py +1366 -0
  56. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/211.py +1186 -0
  57. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/2111.py +1186 -0
  58. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/2111Negative.py +1186 -0
  59. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/270/211Negative.py +1186 -0
  60. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/272/214.py +1102 -0
  61. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/272/2141.py +1422 -0
  62. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/272/2141Negative.py +1422 -0
  63. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/272/214Negative.py +1102 -0
  64. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/272/214/344/270/211.py +1240 -0
  65. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/272/214/344/270/2111.py +1228 -0
  66. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/272/214/344/270/2111Negative.py +1228 -0
  67. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/344/272/214/344/270/211Negative.py +1240 -0
  68. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266.py +32 -0
  69. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/2661.py +1162 -0
  70. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/2661Negative.py +1162 -0
  71. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266Negative.py +32 -0
  72. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200.py +1186 -0
  73. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/2001.py +1926 -0
  74. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/2001Negative.py +1926 -0
  75. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200Negative.py +1186 -0
  76. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/270/211.py +1291 -0
  77. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/270/2111.py +1176 -0
  78. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/270/2111Negative.py +1176 -0
  79. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/270/211Negative.py +1291 -0
  80. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/272/214.py +1228 -0
  81. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/272/2141.py +1324 -0
  82. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/272/2141Negative.py +1324 -0
  83. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/272/214Negative.py +1228 -0
  84. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/272/214/344/270/211.py +1274 -0
  85. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/272/214/344/270/2111.py +1038 -0
  86. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/272/214/344/270/2111Negative.py +1038 -0
  87. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/200/344/272/214/344/270/211Negative.py +1274 -0
  88. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/211.py +2158 -0
  89. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/2111.py +1926 -0
  90. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/2111Negative.py +1926 -0
  91. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/270/211Negative.py +2158 -0
  92. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/272/214.py +1422 -0
  93. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/272/2141.py +1364 -0
  94. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/272/2141Negative.py +1364 -0
  95. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/272/214Negative.py +1422 -0
  96. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/272/214/344/270/211.py +1420 -0
  97. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/272/214/344/270/2111.py +1324 -0
  98. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/272/214/344/270/2111Negative.py +1324 -0
  99. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d5/351/246/226/351/233/266/344/272/214/344/270/211Negative.py +1420 -0
  100. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200.py +3133 -0
  101. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/2001.py +6039 -0
  102. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/2001Negative.py +6039 -0
  103. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200Negative.py +3133 -0
  104. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/270/211.py +3527 -0
  105. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/270/2111.py +2300 -0
  106. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/270/2111Negative.py +2300 -0
  107. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/270/211Negative.py +3527 -0
  108. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/272/214.py +3597 -0
  109. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/272/2141.py +3317 -0
  110. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/272/2141Negative.py +3317 -0
  111. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/272/214Negative.py +3597 -0
  112. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/272/214/344/270/211.py +3161 -0
  113. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/272/214/344/270/2111.py +2877 -0
  114. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/272/214/344/270/2111Negative.py +2877 -0
  115. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/200/344/272/214/344/270/211Negative.py +3161 -0
  116. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/211.py +2981 -0
  117. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/2111.py +3055 -0
  118. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/2111Negative.py +3055 -0
  119. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/270/211Negative.py +2981 -0
  120. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/272/214.py +3221 -0
  121. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/272/2141.py +3988 -0
  122. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/272/2141Negative.py +3988 -0
  123. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/272/214Negative.py +3221 -0
  124. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/272/214/344/270/211.py +3652 -0
  125. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/272/214/344/270/2111.py +2863 -0
  126. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/272/214/344/270/2111Negative.py +2863 -0
  127. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/344/272/214/344/270/211Negative.py +3652 -0
  128. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200.py +2485 -0
  129. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/2001.py +4566 -0
  130. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/2001Negative.py +4566 -0
  131. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200Negative.py +2485 -0
  132. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/270/211.py +3006 -0
  133. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/270/2111.py +2485 -0
  134. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/270/2111Negative.py +2485 -0
  135. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/270/211Negative.py +3006 -0
  136. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/272/214.py +3304 -0
  137. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/272/2141.py +3015 -0
  138. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/272/2141Negative.py +3015 -0
  139. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/272/214Negative.py +3304 -0
  140. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/272/214/344/270/211.py +2939 -0
  141. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/272/214/344/270/2111.py +2589 -0
  142. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/272/214/344/270/2111Negative.py +2589 -0
  143. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/200/344/272/214/344/270/211Negative.py +2939 -0
  144. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/211.py +3899 -0
  145. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/2111.py +2996 -0
  146. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/2111Negative.py +2996 -0
  147. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/270/211Negative.py +3899 -0
  148. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/272/214.py +3223 -0
  149. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/272/2141.py +3020 -0
  150. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/272/2141Negative.py +3020 -0
  151. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/272/214Negative.py +3223 -0
  152. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/272/214/344/270/211.py +3250 -0
  153. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/272/214/344/270/2111.py +2667 -0
  154. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/272/214/344/270/2111Negative.py +2667 -0
  155. mapFolding/_e/Z0Z_analysisPython/exclusionData/collatedp2d6/351/246/226/351/233/266/344/272/214/344/270/211Negative.py +3250 -0
  156. mapFolding/_e/Z0Z_analysisPython/measure.py +162 -0
  157. mapFolding/_e/Z0Z_analysisPython/positionAnalysis.py +403 -0
  158. mapFolding/_e/Z0Z_analysisPython/positionAnalysisPileRanges2d6.py +110 -0
  159. mapFolding/_e/Z0Z_analysisPython/theExcluderBeast.py +640 -0
  160. mapFolding/_e/Z0Z_analysisPython/toolkit.py +166 -0
  161. mapFolding/_e/Z0Z_analysisPython/toolkitCSVsequences.py +188 -0
  162. mapFolding/_e/Z0Z_analysisPython/workBenchPatternFinder.py +284 -0
  163. mapFolding/_e/Z0Z_notes/__init__.py +0 -0
  164. mapFolding/_e/Z0Z_notes/knowledgeDump.py +214 -0
  165. mapFolding/_e/__init__.py +45 -0
  166. mapFolding/_e/_beDRY.py +547 -0
  167. mapFolding/_e/_dataDynamic.py +1164 -0
  168. mapFolding/_e/_measure.py +579 -0
  169. mapFolding/_e/_semiotics.py +363 -0
  170. mapFolding/_e/_theTypes.py +31 -0
  171. mapFolding/_e/algorithms/__init__.py +1 -0
  172. mapFolding/_e/algorithms/constraintPropagation.py +158 -0
  173. mapFolding/_e/algorithms/elimination.py +118 -0
  174. mapFolding/_e/algorithms/eliminationCrease.py +66 -0
  175. mapFolding/_e/algorithms/iff.py +584 -0
  176. mapFolding/_e/basecamp.py +89 -0
  177. mapFolding/_e/dataBaskets.py +123 -0
  178. mapFolding/_e/dataRaw/__init__.py +0 -0
  179. mapFolding/_e/easyRun/__init__.py +0 -0
  180. mapFolding/_e/easyRun/eliminateFolds.py +72 -0
  181. mapFolding/_e/easyRun/pinning.py +62 -0
  182. mapFolding/_e/filters.py +384 -0
  183. mapFolding/_e/pin2/344/270/212nDimensions.py +882 -0
  184. mapFolding/_e/pin2/344/270/212nDimensionsAnnex.py +551 -0
  185. mapFolding/_e/pin2/344/270/212nDimensionsByCrease.py +190 -0
  186. mapFolding/_e/pin2/344/270/212nDimensionsByDomain.py +459 -0
  187. mapFolding/_e/pinIt.py +436 -0
  188. mapFolding/_semiotics.py +42 -0
  189. mapFolding/_theSSOT.py +11 -56
  190. mapFolding/_theTypes.py +52 -68
  191. mapFolding/algorithms/A086345.py +8 -3
  192. mapFolding/algorithms/__init__.py +1 -1
  193. mapFolding/algorithms/matrixMeandersNumPyndas.py +18 -18
  194. mapFolding/algorithms/oeisIDbyFormula.py +4 -4
  195. mapFolding/algorithms/zCuzDocStoopidoeisIDbyFormula.py +3 -3
  196. mapFolding/basecamp.py +13 -28
  197. mapFolding/beDRY.py +108 -99
  198. mapFolding/filesystemToolkit.py +15 -11
  199. mapFolding/oeis.py +17 -16
  200. mapFolding/reference/matrixMeandersAnalysis/prefixNotationNotes.py +2 -2
  201. mapFolding/reference/meandersDumpingGround/matrixMeandersBaselineV2.py +0 -1
  202. mapFolding/reference/meandersDumpingGround/matrixMeandersNumPyV1finalForm.py +8 -10
  203. mapFolding/someAssemblyRequired/RecipeJob.py +5 -5
  204. mapFolding/someAssemblyRequired/makeJobTheorem2Numba.py +5 -2
  205. mapFolding/someAssemblyRequired/makeJobTheorem2codon.py +9 -11
  206. mapFolding/someAssemblyRequired/mapFoldingModules/makeMapFoldingModules.py +2 -1
  207. mapFolding/someAssemblyRequired/transformationTools.py +2 -2
  208. mapFolding/tests/Z0Z_test_e_excluder.py +155 -0
  209. mapFolding/tests/conftest.py +193 -314
  210. mapFolding/tests/dataSamples/A001417.py +455 -0
  211. mapFolding/tests/dataSamples/__init__.py +1 -0
  212. mapFolding/tests/dataSamples/measurementData.py +1818 -0
  213. mapFolding/tests/dataSamples/p2DnDomain3_2_/351/246/226/344/270/200_/351/246/226/351/233/266/344/270/200.py +17 -0
  214. mapFolding/tests/dataSamples/p2DnDomain3_/351/246/226/344/270/200.py +17 -0
  215. mapFolding/tests/dataSamples/p2DnDomain5_4.py +17 -0
  216. mapFolding/tests/dataSamples/p2DnDomain6_5.py +17 -0
  217. mapFolding/tests/dataSamples/p2DnDomain6_7_5_4.py +17 -0
  218. mapFolding/tests/dataSamples/p2DnDomain7_6.py +17 -0
  219. mapFolding/tests/dataSamples/p2DnDomain/351/246/226/344/272/214_/351/246/226/351/233/266/344/270/200/344/272/214.py +17 -0
  220. mapFolding/tests/dataSamples/p2DnDomain/351/246/226/344/272/214_/351/246/226/351/233/266/344/272/214_/351/246/226/351/233/266/344/270/200/344/272/214_/351/246/226/344/270/200/344/272/214.py +17 -0
  221. mapFolding/tests/dataSamples/p2DnDomain/351/246/226/351/233/266/344/270/200/344/272/214_/351/246/226/344/270/200/344/272/214.py +15 -0
  222. mapFolding/tests/dataSamples/p2DnDomain/351/246/226/351/233/266/344/272/214_/351/246/226/344/272/214.py +15 -0
  223. mapFolding/tests/dataSamples/semioticsData.py +135 -0
  224. mapFolding/tests/test_computations.py +133 -88
  225. mapFolding/tests/test_e_computations.py +42 -0
  226. mapFolding/tests/test_e_dataDynamic.py +189 -0
  227. mapFolding/tests/test_e_measurements.py +257 -0
  228. mapFolding/tests/test_e_pinning.py +61 -0
  229. mapFolding/tests/test_e_semiotics.py +128 -0
  230. mapFolding/tests/test_filesystem.py +39 -17
  231. mapFolding/tests/{test_other.py → test_parameterValidation.py} +3 -3
  232. mapFolding/tests/{test_tasks.py → test_taskDivisions.py} +42 -23
  233. mapFolding/zCuzDocStoopid/makeDocstrings.py +3 -2
  234. {mapfolding-0.17.0.dist-info → mapfolding-0.18.0.dist-info}/METADATA +15 -9
  235. mapfolding-0.18.0.dist-info/RECORD +305 -0
  236. {mapfolding-0.17.0.dist-info → mapfolding-0.18.0.dist-info}/WHEEL +1 -1
  237. easyRun/A000682.py +0 -25
  238. easyRun/A005316.py +0 -20
  239. mapFolding/algorithms/A000136constraintPropagation.py +0 -95
  240. mapFolding/algorithms/A000136elimination.py +0 -163
  241. mapFolding/algorithms/A000136eliminationParallel.py +0 -77
  242. mapfolding-0.17.0.dist-info/RECORD +0 -107
  243. {mapfolding-0.17.0.dist-info → mapfolding-0.18.0.dist-info}/entry_points.txt +0 -0
  244. {mapfolding-0.17.0.dist-info → mapfolding-0.18.0.dist-info}/licenses/LICENSE +0 -0
  245. {mapfolding-0.17.0.dist-info → mapfolding-0.18.0.dist-info}/top_level.txt +0 -0
@@ -7,6 +7,7 @@ from astToolkit import (
7
7
  from astToolkit.containers import IngredientsFunction, IngredientsModule
8
8
  from astToolkit.transformationTools import removeUnusedParameters, write_astModule
9
9
  from hunterMakesPy import raiseIfNone
10
+ from io import TextIOBase
10
11
  from mapFolding import DatatypeLeavesTotal, getPathFilenameFoldsTotal, packageSettings
11
12
  from mapFolding.dataBaskets import MapFoldingState
12
13
  from mapFolding.someAssemblyRequired import DatatypeConfiguration, default, IfThis
@@ -14,14 +15,11 @@ from mapFolding.someAssemblyRequired.RecipeJob import (
14
15
  customizeDatatypeViaImport, moveShatteredDataclass_arg2body, RecipeJobTheorem2)
15
16
  from mapFolding.syntheticModules.initializeState import transitionOnGroupsOfFolds
16
17
  from pathlib import Path, PurePosixPath
17
- from typing import cast, TYPE_CHECKING
18
+ from typing import cast
19
+ import ast
18
20
  import subprocess
19
21
  import sys
20
22
 
21
- if TYPE_CHECKING:
22
- from io import TextIOBase
23
- import ast
24
-
25
23
  # TODO Converge with `makeJobTheorem2Numba`.
26
24
 
27
25
  listDatatypeConfigurations: list[DatatypeConfiguration] = [
@@ -73,8 +71,8 @@ def _variableCompatibility(ingredientsFunction: IngredientsFunction, job: Recipe
73
71
  identifier: str = ast_arg.arg
74
72
  annotation: ast.expr = raiseIfNone(ast_arg.annotation)
75
73
 
76
- # ------- `identifier` is target of Augmented Assignment, or --------------
77
- # ------- `identifier` is target of Assignment and value is Constant. -----
74
+ #-------- `identifier` is target of Augmented Assignment, or --------------
75
+ #-------- `identifier` is target of Assignment and value is Constant. -----
78
76
  NodeChanger(
79
77
  IfThis.isAnyOf(
80
78
  Be.AugAssign.targetIs(IfThis.isNestedNameIdentifier(identifier))
@@ -84,23 +82,23 @@ def _variableCompatibility(ingredientsFunction: IngredientsFunction, job: Recipe
84
82
  , doThat=lambda node, annotation=annotation: Grab.valueAttribute(Then.replaceWith(Make.Call(annotation, listParameters=[node.value])))(node)
85
83
  ).visit(ingredientsFunction.astFunctionDef)
86
84
 
87
- # ------- `identifier` - 1. ----------------------------------------------
85
+ #-------- `identifier` - 1. ----------------------------------------------
88
86
  NodeChanger(Be.BinOp.leftIs(IfThis.isNestedNameIdentifier(identifier))
89
87
  , doThat=lambda node, annotation=annotation: Grab.rightAttribute(Then.replaceWith(Make.Call(annotation, listParameters=[node.right])))(node)
90
88
  ).visit(ingredientsFunction.astFunctionDef)
91
89
 
92
- # ------- `identifier` in Comparison. -------------------------------------
90
+ #-------- `identifier` in Comparison. -------------------------------------
93
91
  NodeChanger(Be.Compare.leftIs(IfThis.isNestedNameIdentifier(identifier))
94
92
  , doThat=lambda node, annotation=annotation: Grab.comparatorsAttribute(lambda at, annotation=annotation: Then.replaceWith([Make.Call(annotation, listParameters=[node.comparators[0]])])(at[0]))(node)
95
93
  ).visit(ingredientsFunction.astFunctionDef)
96
94
 
97
- # ------- `identifier` has exactly one index value. -----------------------
95
+ #-------- `identifier` has exactly one index value. -----------------------
98
96
  NodeChanger(IfThis.isAllOf(Be.Subscript.valueIs(IfThis.isNestedNameIdentifier(identifier))
99
97
  , lambda node: not Be.Subscript.sliceIs(Be.Tuple)(node))
100
98
  , doThat=lambda node: Grab.sliceAttribute(Then.replaceWith(Make.Call(Make.Name('int'), listParameters=[node.slice])))(node)
101
99
  ).visit(ingredientsFunction.astFunctionDef)
102
100
 
103
- # ------- `identifier` has multiple index values. -------------------------
101
+ #-------- `identifier` has multiple index values. -------------------------
104
102
  NodeChanger(IfThis.isAllOf(Be.Subscript.valueIs(IfThis.isNestedNameIdentifier(identifier))
105
103
  , Be.Subscript.sliceIs(Be.Tuple))
106
104
  , doThat=lambda node: Grab.sliceAttribute(Grab.eltsAttribute(
@@ -5,7 +5,8 @@ from astToolkit import (
5
5
  from astToolkit.containers import (
6
6
  astModuleToIngredientsFunction, IngredientsFunction, IngredientsModule, LedgerOfImports)
7
7
  from astToolkit.transformationTools import inlineFunctionDef, removeUnusedParameters, write_astModule
8
- from hunterMakesPy import importLogicalPath2Identifier, raiseIfNone
8
+ from hunterMakesPy import raiseIfNone
9
+ from hunterMakesPy.filesystemToolkit import importLogicalPath2Identifier
9
10
  from mapFolding import packageSettings
10
11
  from mapFolding.someAssemblyRequired import default, DeReConstructField2ast, IfThis, ShatteredDataclass
11
12
  from mapFolding.someAssemblyRequired.makingModules_count import (
@@ -26,9 +26,9 @@ low-level optimized implementations, maintaining code clarity while achieving pe
26
26
  through specialized compilation paths essential for computationally intensive map folding research.
27
27
  """
28
28
  from astToolkit import Be, extractClassDef, identifierDotAttribute, Make, NodeChanger, parseLogicalPath2astModule, Then
29
- from astToolkit.containers import IngredientsFunction, LedgerOfImports
29
+ from astToolkit.containers import IngredientsFunction
30
30
  from astToolkit.transformationTools import unparseFindReplace
31
- from hunterMakesPy import importLogicalPath2Identifier
31
+ from hunterMakesPy.filesystemToolkit import importLogicalPath2Identifier
32
32
  from mapFolding.someAssemblyRequired import DeReConstructField2ast, IfThis, ShatteredDataclass
33
33
  import ast
34
34
  import dataclasses
@@ -0,0 +1,155 @@
1
+ """Tests for the excluder system and analysis tools.
2
+
3
+ This module tests the functionality of the excluder system, including:
4
+ 1. The logic for excluding leaves based on pinned piles (`_Z0Z_excludeThisLeaf`, `Z0Z_excluder`).
5
+ 2. The generation and analysis of exclusion data (`theExcluderBeast.py`).
6
+ 3. The transformation of indices to fraction/addend representations.
7
+
8
+ The tests use `pytest` fixtures and parametrization to ensure flexibility and coverage.
9
+ """
10
+
11
+ from fractions import Fraction
12
+ from mapFolding._e.dataBaskets import EliminationState
13
+ from mapFolding._e.pin2上nDimensionsAnnex import Z0Z_excluder
14
+ from mapFolding._e.Z0Z_analysisPython import theExcluderBeast
15
+ from mapFolding._e.Z0Z_analysisPython.theExcluderBeast import (
16
+ _getContiguousEndingAtNegativeOne, _getContiguousFromStart, expressIndexAsFractionAddend, FractionAddend,
17
+ writeAggregatedExclusions, writeExclusionDataCollated, writeExclusionDictionaries)
18
+ from pathlib import Path, PurePath
19
+ from typing import Any
20
+ from unittest.mock import MagicMock, patch
21
+ import pandas
22
+ import pytest
23
+
24
+ #======== Logic Tests (Adapted from test_excluder_logic.py) =======
25
+
26
+ @pytest.mark.parametrize("dimensionsTotal, pileLast, permutationSpace, expectedResult", [
27
+ (6, 99, {7: 4, 12: 36}, True),
28
+ ], ids=["2d6_pileLast99_pinned7_4_12_36"])
29
+ def test_Z0Z_excluder(dimensionsTotal: int, pileLast: int, permutationSpace: dict[int, int], expectedResult: bool, monkeypatch: pytest.MonkeyPatch) -> None:
30
+ """Verify Z0Z_excluder correctly identifies invalid states."""
31
+ state = MagicMock(spec=EliminationState)
32
+ state.dimensionsTotal = dimensionsTotal
33
+ state.pileLast = pileLast
34
+ state.permutationSpace = permutationSpace
35
+
36
+ stubLookup: dict[int, dict[int, dict[int, list[int]]]] = {
37
+ 7: {
38
+ 4: {
39
+ 12: [36]
40
+ }
41
+ }
42
+ }
43
+ monkeypatch.setattr("mapFolding._e.pin2上nDimensionsAnnex.dictionary2d6AtPileLeafExcludedByPile", stubLookup)
44
+
45
+ result = Z0Z_excluder(state)
46
+ assert result == expectedResult
47
+
48
+ #======== Transformation Tests =======
49
+
50
+ @pytest.mark.parametrize("index, pilesTotal, denominators, expected", [
51
+ (0, 10, (), (Fraction(0, 1), 0)),
52
+ (5, 10, (2,), (Fraction(1, 2), 0)),
53
+ (-1, 10, (), (Fraction(0, 1), -1)),
54
+ ], ids=["index=0", "index=5", "index=-1"])
55
+ def test_expressIndexAsFractionAddend(index: int, pilesTotal: int, denominators: tuple[int, ...], expected: FractionAddend) -> None:
56
+ """Verify index to fraction/addend conversion."""
57
+ assert expressIndexAsFractionAddend(index, pilesTotal, denominators) == expected
58
+
59
+ #======== Analysis Method Tests =======
60
+
61
+ @pytest.mark.parametrize("indices, expected", [
62
+ ([0, 1, 2, 5], [0, 1, 2]),
63
+ ([1, 2, 3], []),
64
+ ([0], []),
65
+ ], ids=["contiguous-run", "no-zero-start", "single-value"])
66
+ def test_getContiguousFromStart(indices: list[int], expected: list[int]) -> None:
67
+ assert _getContiguousFromStart(indices) == expected
68
+
69
+ @pytest.mark.parametrize("offsets, expected", [
70
+ ([-4, -3, -1], []),
71
+ ([-3, -2, -1], [-3, -2, -1]),
72
+ ([-1], []),
73
+ ], ids=["missing-terminal", "full-run", "single-value"])
74
+ def test_getContiguousEndingAtNegativeOne(offsets: list[int], expected: list[int]) -> None:
75
+ assert _getContiguousEndingAtNegativeOne(offsets) == expected
76
+
77
+ #======== File Generation Tests =======
78
+
79
+ def test_writeExclusionDataCollated_creates_files(path_tmpTesting: Path, monkeypatch: pytest.MonkeyPatch) -> None:
80
+ def stubLeafZero(dimensionsTotal: int) -> int:
81
+ return 0
82
+
83
+ def stubLeafOne(dimensionsTotal: int) -> int:
84
+ return 1
85
+
86
+ monkeypatch.setattr(theExcluderBeast, "functionsHeadDimensions", [stubLeafZero, stubLeafOne])
87
+ monkeypatch.setattr(theExcluderBeast, "dictionaryFunctionsByName", {stubLeafZero.__name__: stubLeafZero, stubLeafOne.__name__: stubLeafOne})
88
+ monkeypatch.setattr(theExcluderBeast, "pathExclusionData", path_tmpTesting)
89
+
90
+ def stubLeafDomains(state: EliminationState) -> dict[int, range]:
91
+ return {0: range(2), 1: range(2)}
92
+
93
+ monkeypatch.setattr(theExcluderBeast, "getDictionaryLeafDomains", stubLeafDomains)
94
+
95
+ def stubDataFrameFoldings(state: EliminationState) -> pandas.DataFrame:
96
+ return pandas.DataFrame({0: [0, 1], 1: [1, 0]})
97
+
98
+ monkeypatch.setattr(theExcluderBeast, "getDataFrameFoldings", stubDataFrameFoldings)
99
+
100
+ pathsCreated: list[PurePath] = writeExclusionDataCollated(listDimensions=[5])
101
+
102
+ assert pathsCreated
103
+ for pathCreated in pathsCreated:
104
+ assert Path(pathCreated).exists()
105
+ assert Path(pathCreated).parent == path_tmpTesting
106
+ assert "leafExcluderData" in Path(pathCreated).read_text(encoding="utf-8")
107
+
108
+ def test_writeAggregatedExclusions_creates_files(path_tmpTesting: Path, monkeypatch: pytest.MonkeyPatch) -> None:
109
+ def stubLeaf(dimensionsTotal: int) -> int:
110
+ return 0
111
+
112
+ monkeypatch.setattr(theExcluderBeast, "functionsHeadDimensions", [stubLeaf])
113
+ monkeypatch.setattr(theExcluderBeast, "pathExclusionData", path_tmpTesting)
114
+
115
+ stub_data: dict[str, dict[str, dict[str, list[tuple[Fraction, int]]]]] = {
116
+ stubLeaf.__name__: {
117
+ stubLeaf.__name__: {
118
+ stubLeaf.__name__: [(Fraction(0, 1), 0), (Fraction(0, 1), 1)]
119
+ }
120
+ }
121
+ }
122
+ def stub_analyze(*args: Any, **kwargs: Any) -> dict[str, dict[str, dict[str, list[tuple[Fraction, int]]]]]:
123
+ return stub_data
124
+
125
+ monkeypatch.setattr(theExcluderBeast, "analyzeContiguousEndAbsolute", stub_analyze)
126
+ monkeypatch.setattr(theExcluderBeast, "analyzeContiguousEndRelative", stub_analyze)
127
+ monkeypatch.setattr(theExcluderBeast, "analyzeContiguousStartAbsolute", stub_analyze)
128
+ monkeypatch.setattr(theExcluderBeast, "analyzeContiguousStartRelative", stub_analyze)
129
+ monkeypatch.setattr(theExcluderBeast, "analyzeNonContiguousIndicesRelative", stub_analyze)
130
+
131
+ listPathFilenames: list[PurePath] = writeAggregatedExclusions(path_tmpTesting)
132
+
133
+ assert listPathFilenames
134
+ for pathCreated in listPathFilenames:
135
+ assert Path(pathCreated).exists()
136
+ assert Path(pathCreated).parent == path_tmpTesting
137
+ assert "dictionaryExclusions" in Path(pathCreated).read_text(encoding="utf-8")
138
+
139
+ def test_writeExclusionDictionaries_createsFile(path_tmpTesting: Path) -> None:
140
+ """Verify writeExclusionDictionaries creates the output file."""
141
+ # This function calls loadAggregatedExclusions which looks for files in pathExclusionData.
142
+ # We need to ensure there are files there or mock loadAggregatedExclusions.
143
+
144
+ with patch("mapFolding._e.Z0Z_analysisPython.theExcluderBeast.pathExclusionData", path_tmpTesting), \
145
+ patch("mapFolding._e.Z0Z_analysisPython.theExcluderBeast.loadAggregatedExclusions", return_value={}):
146
+ # It also calls restructureAggregatedExclusionsForMapShape which needs to work with empty dict
147
+ pathExclusionsFile: Path = path_tmpTesting / "_exclusions.py"
148
+ pathCreated: PurePath = writeExclusionDictionaries(pathExclusionsFile)
149
+
150
+ assert Path(pathCreated).exists()
151
+ assert Path(pathCreated).name == "_exclusions.py"
152
+
153
+ content = Path(pathCreated).read_text(encoding="utf-8")
154
+ assert "dictionary2d5LeafExcludedAtPileByPile" in content
155
+