maicos 0.12__py3-none-any.whl

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Files changed (41) hide show
  1. maicos/__init__.py +19 -0
  2. maicos/__main__.py +29 -0
  3. maicos/_version.py +34 -0
  4. maicos/core/__init__.py +25 -0
  5. maicos/core/base.py +918 -0
  6. maicos/core/cylinder.py +256 -0
  7. maicos/core/planar.py +299 -0
  8. maicos/core/sphere.py +235 -0
  9. maicos/lib/__init__.py +18 -0
  10. maicos/lib/math.py +613 -0
  11. maicos/lib/tables.py +228 -0
  12. maicos/lib/util.py +838 -0
  13. maicos/lib/weights.py +212 -0
  14. maicos/modules/__init__.py +52 -0
  15. maicos/modules/densitycylinder.py +85 -0
  16. maicos/modules/densityplanar.py +90 -0
  17. maicos/modules/densitysphere.py +79 -0
  18. maicos/modules/dielectriccylinder.py +272 -0
  19. maicos/modules/dielectricplanar.py +375 -0
  20. maicos/modules/dielectricspectrum.py +32 -0
  21. maicos/modules/dielectricsphere.py +180 -0
  22. maicos/modules/dipoleangle.py +28 -0
  23. maicos/modules/dipordercylinder.py +100 -0
  24. maicos/modules/diporderplanar.py +96 -0
  25. maicos/modules/dipordersphere.py +88 -0
  26. maicos/modules/diporderstructurefactor.py +31 -0
  27. maicos/modules/kineticenergy.py +27 -0
  28. maicos/modules/pdfcylinder.py +415 -0
  29. maicos/modules/pdfplanar.py +295 -0
  30. maicos/modules/rdfdiporder.py +33 -0
  31. maicos/modules/saxs.py +32 -0
  32. maicos/modules/temperatureplanar.py +86 -0
  33. maicos/modules/velocitycylinder.py +98 -0
  34. maicos/modules/velocityplanar.py +102 -0
  35. maicos-0.12.dist-info/METADATA +200 -0
  36. maicos-0.12.dist-info/RECORD +41 -0
  37. maicos-0.12.dist-info/WHEEL +5 -0
  38. maicos-0.12.dist-info/entry_points.txt +2 -0
  39. maicos-0.12.dist-info/licenses/AUTHORS.rst +36 -0
  40. maicos-0.12.dist-info/licenses/LICENSE +674 -0
  41. maicos-0.12.dist-info/top_level.txt +1 -0
maicos/__init__.py ADDED
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+ #!/usr/bin/env python
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+ #
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+ # Copyright (c) 2026 Authors and contributors
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+ # (see the AUTHORS.rst file for the full list of names)
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+ #
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+ # Released under the GNU Public Licence, v3 or any higher version
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+ # SPDX-License-Identifier: GPL-3.0-or-later
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+ """MAICoS: Molecular Analysis of Interfacial and COnfined Systems."""
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+
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+ import warnings
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+
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+ from ._version import __version__ # noqa: F401
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+ from .modules import * # noqa: F403
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+ from .modules import __all__ as __all__
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+
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+ __authors__ = "MAICoS Developer Team"
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+
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+ # Print maicos DeprecationWarnings
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+ warnings.filterwarnings(action="once", category=DeprecationWarning, module="maicos")
maicos/__main__.py ADDED
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+ #!/usr/bin/env python
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+ #
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+ # Copyright (c) 2026 Authors and contributors
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+ # (see the AUTHORS.rst file for the full list of names)
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+ #
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+ # Released under the GNU Public Licence, v3 or any higher version
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+ # SPDX-License-Identifier: GPL-3.0-or-later
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+ """Analyse molecular dynamics simulation of interfacial and confined systems."""
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+
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+ from mdacli import cli
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+
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+ from maicos import __version__
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+ from maicos.core import AnalysisBase
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+
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+
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+ def main():
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+ """Execute main CLI entry point."""
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+ cli(
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+ name="MAICoS",
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+ module_list=["maicos"],
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+ base_class=AnalysisBase,
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+ version=__version__,
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+ description=__doc__,
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+ ignore_warnings=True,
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+ )
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+
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+
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+ if __name__ == "__main__":
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+ main()
maicos/_version.py ADDED
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+ # file generated by setuptools-scm
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+ # don't change, don't track in version control
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+
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+ __all__ = [
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+ "__version__",
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+ "__version_tuple__",
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+ "version",
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+ "version_tuple",
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+ "__commit_id__",
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+ "commit_id",
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+ ]
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+
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+ TYPE_CHECKING = False
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+ if TYPE_CHECKING:
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+ from typing import Tuple
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+ from typing import Union
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+
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+ VERSION_TUPLE = Tuple[Union[int, str], ...]
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+ COMMIT_ID = Union[str, None]
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+ else:
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+ VERSION_TUPLE = object
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+ COMMIT_ID = object
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+
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+ version: str
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+ __version__: str
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+ __version_tuple__: VERSION_TUPLE
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+ version_tuple: VERSION_TUPLE
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+ commit_id: COMMIT_ID
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+ __commit_id__: COMMIT_ID
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+
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+ __version__ = version = '0.12'
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+ __version_tuple__ = version_tuple = (0, 12)
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+
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+ __commit_id__ = commit_id = None
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+ #!/usr/bin/env python
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+ #
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+ # Copyright (c) 2026 Authors and contributors
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+ # (see the AUTHORS.rst file for the full list of names)
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+ #
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+ # Released under the GNU Public Licence, v3 or any higher version
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+ # SPDX-License-Identifier: GPL-3.0-or-later
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+ """These Modules build the core of other MAICoS modules."""
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+
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+ __all__ = [
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+ "AnalysisBase",
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+ "AnalysisCollection",
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+ "ProfileBase",
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+ "CylinderBase",
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+ "ProfileCylinderBase",
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+ "PlanarBase",
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+ "ProfilePlanarBase",
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+ "SphereBase",
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+ "ProfileSphereBase",
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+ ]
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+
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+ from .base import AnalysisBase, AnalysisCollection, ProfileBase
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+ from .cylinder import CylinderBase, ProfileCylinderBase
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+ from .planar import PlanarBase, ProfilePlanarBase
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+ from .sphere import ProfileSphereBase, SphereBase