lsst-pipe-base 30.0.0rc3__py3-none-any.whl → 30.0.1__py3-none-any.whl

lsst/pipe/base/quantum_graph_skeleton.py

@@ -42,7 +42,7 @@ __all__ = (
 import dataclasses
 from collections import defaultdict
 from collections.abc import Iterable, Iterator, MutableMapping, Set
-from typing import TYPE_CHECKING, Any, ClassVar, Literal, TypeAlias
+from typing import TYPE_CHECKING, Any, ClassVar, Literal
 
 import networkx
 
@@ -145,7 +145,7 @@ class PrerequisiteDatasetKey:
     is_prerequisite: ClassVar[Literal[True]] = True
 
 
-Key: TypeAlias = QuantumKey | TaskInitKey | DatasetKey | PrerequisiteDatasetKey
+type Key = QuantumKey | TaskInitKey | DatasetKey | PrerequisiteDatasetKey
 
 
 class QuantumGraphSkeleton:
@@ -571,12 +571,13 @@ class QuantumGraphSkeleton:
     def set_dataset_ref(
         self, ref: DatasetRef, key: DatasetKey | PrerequisiteDatasetKey | None = None
     ) -> None:
-        """Associate a dataset node with a `DatasetRef` instance.
+        """Associate a dataset node with a `~lsst.daf.butler.DatasetRef`
+        instance.
 
         Parameters
         ----------
-        ref : `DatasetRef`
-            `DatasetRef` to associate with the node.
+        ref : `~lsst.daf.butler.DatasetRef`
+            `~lsst.daf.butler.DatasetRef` to associate with the node.
         key : `DatasetKey` or `PrerequisiteDatasetKey`, optional
             Identifier for the graph node.  If not provided, a `DatasetKey`
             is constructed from the dataset type name and data ID of ``ref``.
@@ -586,32 +587,33 @@ class QuantumGraphSkeleton:
         self._xgraph.nodes[key]["ref"] = ref
 
     def set_output_for_skip(self, ref: DatasetRef) -> None:
-        """Associate a dataset node with a `DatasetRef` that represents an
-        existing output in a collection where such outputs can cause a quantum
-        to be skipped.
+        """Associate a dataset node with a `~lsst.daf.butler.DatasetRef` that
+        represents an existing output in a collection where such outputs can
+        cause a quantum to be skipped.
 
         Parameters
         ----------
-        ref : `DatasetRef`
-            `DatasetRef` to associate with the node.
+        ref : `~lsst.daf.butler.DatasetRef`
+            `~lsst.daf.butler.DatasetRef` to associate with the node.
         """
         key = DatasetKey(ref.datasetType.name, ref.dataId.required_values)
         self._xgraph.nodes[key]["output_for_skip"] = ref
 
     def set_output_in_the_way(self, ref: DatasetRef) -> None:
-        """Associate a dataset node with a `DatasetRef` that represents an
-        existing output in the output RUN collection.
+        """Associate a dataset node with a `~lsst.daf.butler.DatasetRef` that
+        represents an existing output in the output RUN collection.
 
         Parameters
         ----------
-        ref : `DatasetRef`
-            `DatasetRef` to associate with the node.
+        ref : `~lsst.daf.butler.DatasetRef`
+            `~lsst.daf.butler.DatasetRef` to associate with the node.
         """
         key = DatasetKey(ref.datasetType.name, ref.dataId.required_values)
         self._xgraph.nodes[key]["output_in_the_way"] = ref
 
     def get_dataset_ref(self, key: DatasetKey | PrerequisiteDatasetKey) -> DatasetRef | None:
-        """Return the `DatasetRef` associated with the given node.
+        """Return the `~lsst.daf.butler.DatasetRef` associated with the given
+        node.
 
         This does not return "output for skip" and "output in the way"
         datasets.
@@ -623,14 +625,14 @@ class QuantumGraphSkeleton:
 
         Returns
         -------
-        ref : `DatasetRef` or `None`
+        ref : `~lsst.daf.butler.DatasetRef` or `None`
             Dataset reference associated with the node.
         """
         return self._xgraph.nodes[key].get("ref")
 
     def get_output_for_skip(self, key: DatasetKey) -> DatasetRef | None:
-        """Return the `DatasetRef` associated with the given node in a
-        collection where it could lead to a quantum being skipped.
+        """Return the `~lsst.daf.butler.DatasetRef` associated with the given
+        node in a collection where it could lead to a quantum being skipped.
 
         Parameters
         ----------
@@ -639,14 +641,14 @@ class QuantumGraphSkeleton:
 
         Returns
         -------
-        ref : `DatasetRef` or `None`
+        ref : `~lsst.daf.butler.DatasetRef` or `None`
             Dataset reference associated with the node.
         """
         return self._xgraph.nodes[key].get("output_for_skip")
 
     def get_output_in_the_way(self, key: DatasetKey) -> DatasetRef | None:
-        """Return the `DatasetRef` associated with the given node in the
-        output RUN collection.
+        """Return the `~lsst.daf.butler.DatasetRef` associated with the given
+        node in the output RUN collection.
 
         Parameters
         ----------
@@ -655,16 +657,16 @@ class QuantumGraphSkeleton:
 
         Returns
         -------
-        ref : `DatasetRef` or `None`
+        ref : `~lsst.daf.butler.DatasetRef` or `None`
             Dataset reference associated with the node.
         """
         return self._xgraph.nodes[key].get("output_in_the_way")
 
     def discard_output_in_the_way(self, key: DatasetKey) -> None:
-        """Drop any `DatasetRef` associated with this node in the output RUN
-        collection.
+        """Drop any `~lsst.daf.butler.DatasetRef` associated with this node in
+        the output RUN collection.
 
-        Does nothing if there is no such `DatasetRef`.
+        Does nothing if there is no such `~lsst.daf.butler.DatasetRef`.
 
         Parameters
         ----------
@@ -676,8 +678,8 @@ class QuantumGraphSkeleton:
     def set_data_id(self, key: Key, data_id: DataCoordinate) -> None:
         """Set the data ID associated with a node.
 
-        This updates the data ID in any `DatasetRef` objects associated with
-        the node via `set_ref`, `set_output_for_skip`, or
+        This updates the data ID in any `~lsst.daf.butler.DatasetRef` objects
+        associated with the node via `set_ref`, `set_output_for_skip`, or
         `set_output_in_the_way` as well, assuming it is an expanded version
         of the original data ID.
 
@@ -685,7 +687,7 @@ class QuantumGraphSkeleton:
         ----------
         key : `Key`
             Identifier for the graph node.
-        data_id : `DataCoordinate`
+        data_id : `~lsst.daf.butler.DataCoordinate`
             Data ID for the node.
         """
         state: MutableMapping[str, Any] = self._xgraph.nodes[key]
@@ -710,7 +712,7 @@ class QuantumGraphSkeleton:
 
         Returns
         -------
-        data_id : `DataCoordinate`
+        data_id : `~lsst.daf.butler.DataCoordinate`
             Expanded data ID for the node, if one is available.
 
         Raises

lsst/pipe/base/quantum_provenance_graph.py

@@ -79,6 +79,7 @@ from .automatic_connection_constants import (
     METADATA_OUTPUT_CONNECTION_NAME,
     METADATA_OUTPUT_STORAGE_CLASS,
     METADATA_OUTPUT_TEMPLATE,
+    PROVENANCE_DATASET_TYPE_NAME,
 )
 from .graph import QuantumGraph, QuantumNode
 
@@ -586,8 +587,8 @@ class TaskSummary(pydantic.BaseModel):
 
         Unpack the `QuantumInfo` object, sorting quanta of each status into
         the correct place in the `TaskSummary`. If looking for error messages
-        in the `Butler` logs is desired, take special care to catch issues
-        with missing logs.
+        in the `lsst.daf.butler.Butler` logs is desired, take special care to
+        catch issues with missing logs.
 
         Parameters
         ----------
@@ -866,7 +867,7 @@ class DatasetTypeSummary(pydantic.BaseModel):
 class Summary(pydantic.BaseModel):
     """A summary of the contents of the QuantumProvenanceGraph, including
     all information on the quanta for each task and the datasets of each
-    `DatasetType`.
+    `~lsst.daf.butler.DatasetType`.
     """
 
     tasks: dict[str, TaskSummary] = pydantic.Field(default_factory=dict)
@@ -885,7 +886,7 @@ class Summary(pydantic.BaseModel):
 
         Parameters
         ----------
-        summaries : `Sequence[Summary]`
+        summaries : `~collections.abc.Sequence` [`Summary`]
             Sequence of all `Summary` objects to aggregate.
         """
         result = cls()
@@ -1245,8 +1246,8 @@ class QuantumProvenanceGraph:
         Returns
         -------
         dataset_info : `DatasetInfo`
-            The `TypedDict` with information about the `DatasetType`-dataID
-            pair across all runs.
+            The `TypedDict` with information about the
+            `~lsst.daf.butler.DatasetType`-dataID pair across all runs.
         """
         return self._xgraph.nodes[key]
 
@@ -1262,6 +1263,7 @@ class QuantumProvenanceGraph:
         do_store_logs : `bool`
             Store the logs in the summary dictionary.
         n_cores : `int`, optional
+            Number of cores to use.
 
         Returns
         -------
@@ -1513,8 +1515,22 @@ class QuantumProvenanceGraph:
                     len(self._datasets.keys()),
                 )
         if use_qbb:
-            _LOG.verbose("Using quantum-backed butler for metadata loads.")
-            self._butler_wrappers[output_run] = _ThreadLocalButlerWrapper.wrap_qbb(butler, qgraph)
+            provenance_graph_ref: DatasetRef | None = None
+            try:
+                provenance_graph_ref = butler.find_dataset(
+                    PROVENANCE_DATASET_TYPE_NAME, collections=output_run
+                )
+            except MissingDatasetTypeError:
+                pass
+            if provenance_graph_ref is not None:
+                _LOG.warning(
+                    "Cannot use QBB for metadata/log reads after provenance has been ingested; "
+                    "falling back to full butler."
+                )
+                self._butler_wrappers[output_run] = _ThreadLocalButlerWrapper.wrap_full(butler)
+            else:
+                _LOG.verbose("Using quantum-backed butler for metadata loads.")
+                self._butler_wrappers[output_run] = _ThreadLocalButlerWrapper.wrap_qbb(butler, qgraph)
         else:
             _LOG.verbose("Using full butler for metadata loads.")
             self._butler_wrappers[output_run] = _ThreadLocalButlerWrapper.wrap_full(butler)
@@ -1777,9 +1793,10 @@ class QuantumProvenanceGraph:
             successes. If "exhaustive", all metadata files will be read.  If
             "lazy", only metadata files where at least one predicted output is
             missing will be read.
-        butler : `lsst.daf.butler.Butler`
-            The Butler used for this report. This should match the Butler
-            used for the run associated with the executed quantum graph.
+        executor : `concurrent.futures.Executor`
+            The futures executor to use.
+        futures : `list` [ `concurrent.futures.Future` ]
+            Current list of futures. Will be modified.
         """
         if read_caveats == "lazy" and all(
             self.get_dataset_info(dataset_key)["runs"][output_run].produced
@@ -1994,7 +2011,7 @@ class _ThreadLocalButlerWrapper:
         full_butler : `~lsst.daf.butler.Butler`
             Full butler to draw datastore and dimension configuration from.
         qg : `QuantumGraph`
-            Quantum graph,
+            Quantum graph.
 
         Returns
         -------

lsst/pipe/base/separable_pipeline_executor.py

@@ -79,7 +79,7 @@ class SeparablePipelineExecutor:
     clobber_output : `bool`, optional
         If set, the pipeline execution overwrites existing output files.
         Otherwise, any conflict between existing and new outputs is an error.
-    skip_existing_in : iterable [`str`], optional
+    skip_existing_in : `~collections.abc.Iterable` [`str`], optional
         If not empty, the pipeline execution searches the listed collections
         for existing outputs, and skips any quanta that have run to completion
         (or have no work to do). Otherwise, all tasks are attempted (subject to

lsst/pipe/base/single_quantum_executor.py

@@ -78,12 +78,12 @@ class SingleQuantumExecutor(QuantumExecutor):
         Instance of a task factory.  Defaults to a new instance of
         `lsst.pipe.base.TaskFactory`.
     skip_existing_in : `str` or `~collections.abc.Iterable` [ `str` ]
-        Expressions representing the collections to search for existing output
-        datasets. See :ref:`daf_butler_ordered_collection_searches` for allowed
-        types. This class only checks for the presence of butler output run in
-        the list of collections. If the output run is present in the list then
-        the quanta whose complete outputs exist in the output run will be
-        skipped. `None` or empty string/sequence disables skipping.
+        A collection name or list of collections to search for the existing
+        outputs of quanta, which indicates that those quanta should be skipped.
+        This class only checks for the presence of butler output run in the
+        list of collections. If the output run is present in the list then the
+        quanta whose complete outputs exist in the output run will be skipped.
+        `None` or empty string/sequence disables skipping.
     clobber_outputs : `bool`, optional
         If `True`, then outputs from a quantum that exist in output run
         collection will be removed prior to executing a quantum. If
@@ -92,7 +92,7 @@ class SingleQuantumExecutor(QuantumExecutor):
         `None`.
     enable_lsst_debug : `bool`, optional
         Enable debugging with ``lsstDebug`` facility for a task.
-    limited_butler_factory : `Callable`, optional
+    limited_butler_factory : `~collections.abc.Callable`, optional
         A method that creates a `~lsst.daf.butler.LimitedButler` instance for a
         given Quantum. This parameter must be defined if ``butler`` is `None`.
         If ``butler`` is not `None` then this parameter is ignored.
@@ -254,6 +254,7 @@ class SingleQuantumExecutor(QuantumExecutor):
                     str(exc),
                 )
                 quantumMetadata["caveats"] = QuantumSuccessCaveats.from_adjust_quantum_no_work().value
+                quantumMetadata["outputs"] = []
                 # Make empty metadata that looks something like what a
                 # do-nothing task would write (but we don't bother with empty
                 # nested PropertySets for subtasks).  This is slightly
@@ -266,7 +267,13 @@ class SingleQuantumExecutor(QuantumExecutor):
                 if self._job_metadata is not None:
                     fullMetadata["job"] = self._job_metadata
                 self._write_metadata(quantum, fullMetadata, task_node, limited_butler)
-                return QuantumExecutionResult(quantum, report, skipped_existing=False, adjusted_no_work=True)
+                return QuantumExecutionResult(
+                    quantum,
+                    report,
+                    skipped_existing=False,
+                    adjusted_no_work=True,
+                    task_metadata=fullMetadata,
+                )
 
             # enable lsstDebug debugging
             if self._enable_lsst_debug:

lsst/pipe/base/struct.py

@@ -116,6 +116,10 @@ class Struct(SimpleNamespace):
         *nameList : `str`
             All remaining arguments are names of items to copy.
 
+        Returns
+        -------
+        None
+
         Raises
         ------
         RuntimeError

lsst/pipe/base/testUtils.py

@@ -341,7 +341,7 @@ def _assertAttributeMatchesConnection(obj: Any, attrName: str, connection: BaseC
 
     Raises
     ------
-    AssertionError:
+    AssertionError
         Raised if ``obj.attrName`` does not match what's expected
         from ``connection``.
     """
@@ -379,7 +379,7 @@ def assertValidOutput(task: PipelineTask, result: Struct) -> None:
 
     Raises
     ------
-    AssertionError:
+    AssertionError
         Raised if ``result`` does not match what's expected from ``task's``
         connections.
     """
@@ -402,7 +402,7 @@ def assertValidInitOutput(task: PipelineTask) -> None:
 
     Raises
     ------
-    AssertionError:
+    AssertionError
         Raised if ``task`` does not have the state expected from ``task's``
         connections.
     """

lsst/pipe/base/tests/mocks/_storage_class.py

@@ -381,7 +381,8 @@ MockDataset.model_rebuild()
 
 
 class MockStorageClassDelegate(StorageClassDelegate):
-    """Implementation of the StorageClassDelegate interface for mock datasets.
+    """Implementation of the `~lsst.daf.butler.StorageClassDelegate` interface
+    for mock datasets.
 
     This class does not implement assembly and disassembly just because it's
     not needed right now.  That could be added in the future with some

lsst/pipe/base/version.py

@@ -1,2 +1,2 @@
 __all__ = ["__version__"]
-__version__ = "30.0.0rc3"
+__version__ = "30.0.1"

{lsst_pipe_base-30.0.0rc3.dist-info → lsst_pipe_base-30.0.1.dist-info}/METADATA

@@ -1,20 +1,20 @@
 Metadata-Version: 2.4
 Name: lsst-pipe-base
-Version: 30.0.0rc3
+Version: 30.0.1
 Summary: Pipeline infrastructure for the Rubin Science Pipelines.
 Author-email: Rubin Observatory Data Management <dm-admin@lists.lsst.org>
 License-Expression: BSD-3-Clause OR GPL-3.0-or-later
 Project-URL: Homepage, https://github.com/lsst/pipe_base
+Project-URL: Source, https://github.com/lsst/pipe_base
 Keywords: lsst
 Classifier: Intended Audience :: Science/Research
 Classifier: Operating System :: OS Independent
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
 Classifier: Programming Language :: Python :: 3.14
 Classifier: Topic :: Scientific/Engineering :: Astronomy
-Requires-Python: >=3.11.0
+Requires-Python: >=3.12.0
 Description-Content-Type: text/markdown
 License-File: COPYRIGHT
 License-File: LICENSE

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