lrdbench 1.0.0__py3-none-any.whl

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Files changed (92) hide show
  1. analysis/high_performance/jax/__init__.py +36 -0
  2. analysis/high_performance/jax/cwt_jax.py +242 -0
  3. analysis/high_performance/jax/dfa_jax.py +437 -0
  4. analysis/high_performance/jax/dma_jax.py +397 -0
  5. analysis/high_performance/jax/gph_jax.py +289 -0
  6. analysis/high_performance/jax/higuchi_jax.py +403 -0
  7. analysis/high_performance/jax/mfdfa_jax.py +309 -0
  8. analysis/high_performance/jax/multifractal_wavelet_leaders_jax.py +320 -0
  9. analysis/high_performance/jax/periodogram_jax.py +422 -0
  10. analysis/high_performance/jax/rs_jax.py +391 -0
  11. analysis/high_performance/jax/wavelet_log_variance_jax.py +243 -0
  12. analysis/high_performance/jax/wavelet_variance_jax.py +242 -0
  13. analysis/high_performance/jax/wavelet_whittle_jax.py +233 -0
  14. analysis/high_performance/jax/whittle_jax.py +539 -0
  15. analysis/high_performance/numba/__init__.py +36 -0
  16. analysis/high_performance/numba/cwt_numba.py +264 -0
  17. analysis/high_performance/numba/dfa_numba.py +427 -0
  18. analysis/high_performance/numba/dma_numba.py +388 -0
  19. analysis/high_performance/numba/gph_numba.py +370 -0
  20. analysis/high_performance/numba/higuchi_numba.py +375 -0
  21. analysis/high_performance/numba/mfdfa_numba.py +370 -0
  22. analysis/high_performance/numba/multifractal_wavelet_leaders_numba.py +351 -0
  23. analysis/high_performance/numba/periodogram_numba.py +475 -0
  24. analysis/high_performance/numba/rs_numba.py +384 -0
  25. analysis/high_performance/numba/wavelet_log_variance_numba.py +259 -0
  26. analysis/high_performance/numba/wavelet_variance_numba.py +258 -0
  27. analysis/high_performance/numba/wavelet_whittle_numba.py +231 -0
  28. analysis/high_performance/numba/whittle_numba.py +608 -0
  29. analysis/machine_learning/__init__.py +37 -0
  30. analysis/machine_learning/base_ml_estimator.py +587 -0
  31. analysis/machine_learning/cnn_estimator.py +349 -0
  32. analysis/machine_learning/gradient_boosting_estimator.py +112 -0
  33. analysis/machine_learning/gru_estimator.py +235 -0
  34. analysis/machine_learning/lstm_estimator.py +266 -0
  35. analysis/machine_learning/neural_network_estimator.py +110 -0
  36. analysis/machine_learning/random_forest_estimator.py +113 -0
  37. analysis/machine_learning/svr_estimator.py +97 -0
  38. analysis/machine_learning/transformer_estimator.py +432 -0
  39. analysis/multifractal/mfdfa/mfdfa_estimator.py +405 -0
  40. analysis/multifractal/wavelet_leaders/multifractal_wavelet_leaders_estimator.py +446 -0
  41. analysis/spectral/__init__.py +23 -0
  42. analysis/spectral/gph/__init__.py +22 -0
  43. analysis/spectral/gph/gph_estimator.py +207 -0
  44. analysis/spectral/periodogram/__init__.py +22 -0
  45. analysis/spectral/periodogram/periodogram_estimator.py +224 -0
  46. analysis/spectral/whittle/__init__.py +22 -0
  47. analysis/spectral/whittle/whittle_estimator.py +279 -0
  48. analysis/temporal/dfa/__init__.py +11 -0
  49. analysis/temporal/dfa/dfa_estimator.py +303 -0
  50. analysis/temporal/dma/__init__.py +10 -0
  51. analysis/temporal/dma/dma_estimator.py +314 -0
  52. analysis/temporal/higuchi/__init__.py +10 -0
  53. analysis/temporal/higuchi/higuchi_estimator.py +327 -0
  54. analysis/temporal/rs/__init__.py +10 -0
  55. analysis/temporal/rs/rs_estimator.py +439 -0
  56. analysis/wavelet/cwt/__init__.py +10 -0
  57. analysis/wavelet/cwt/cwt_estimator.py +256 -0
  58. analysis/wavelet/log_variance/__init__.py +10 -0
  59. analysis/wavelet/log_variance/wavelet_log_variance_estimator.py +243 -0
  60. analysis/wavelet/variance/__init__.py +17 -0
  61. analysis/wavelet/variance/wavelet_variance_estimator.py +236 -0
  62. analysis/wavelet/whittle/__init__.py +10 -0
  63. analysis/wavelet/whittle/wavelet_whittle_estimator.py +300 -0
  64. lrdbench-1.0.0.dist-info/METADATA +369 -0
  65. lrdbench-1.0.0.dist-info/RECORD +92 -0
  66. lrdbench-1.0.0.dist-info/WHEEL +5 -0
  67. lrdbench-1.0.0.dist-info/entry_points.txt +4 -0
  68. lrdbench-1.0.0.dist-info/licenses/LICENSE +21 -0
  69. lrdbench-1.0.0.dist-info/top_level.txt +2 -0
  70. models/__init__.py +12 -0
  71. models/contamination/complex_time_series_library.py +686 -0
  72. models/contamination/contamination_models.py +575 -0
  73. models/data_models/__init__.py +10 -0
  74. models/data_models/arfima/__init__.py +9 -0
  75. models/data_models/arfima/arfima_model.py +354 -0
  76. models/data_models/base_model.py +105 -0
  77. models/data_models/fbm/__init__.py +10 -0
  78. models/data_models/fbm/fbm_model.py +242 -0
  79. models/data_models/fgn/__init__.py +13 -0
  80. models/data_models/fgn/fgn_model.py +103 -0
  81. models/data_models/mrw/__init__.py +10 -0
  82. models/data_models/mrw/mrw_model.py +263 -0
  83. models/data_models/neural_fsde/__init__.py +183 -0
  84. models/data_models/neural_fsde/base_neural_fsde.py +261 -0
  85. models/data_models/neural_fsde/fractional_brownian_motion.py +386 -0
  86. models/data_models/neural_fsde/hybrid_factory.py +439 -0
  87. models/data_models/neural_fsde/jax_fsde_net.py +764 -0
  88. models/data_models/neural_fsde/numerical_solvers.py +702 -0
  89. models/data_models/neural_fsde/test_hybrid_system.py +279 -0
  90. models/data_models/neural_fsde/torch_fsde_net.py +785 -0
  91. models/estimators/__init__.py +11 -0
  92. models/estimators/base_estimator.py +136 -0
@@ -0,0 +1,36 @@
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+ """
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+ JAX-optimized high-performance estimators.
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+
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+ This package contains JAX-optimized versions of all estimators for GPU acceleration
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+ and improved performance on large datasets.
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+ """
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+
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+ from .dfa_jax import DFAEstimatorJAX
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+ from .rs_jax import RSEstimatorJAX
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+ from .higuchi_jax import HiguchiEstimatorJAX
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+ from .dma_jax import DMAEstimatorJAX
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+ from .periodogram_jax import PeriodogramEstimatorJAX
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+ from .whittle_jax import WhittleEstimatorJAX
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+ from .gph_jax import GPHEstimatorJAX
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+ from .wavelet_log_variance_jax import WaveletLogVarianceEstimatorJAX
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+ from .wavelet_variance_jax import WaveletVarianceEstimatorJAX
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+ from .wavelet_whittle_jax import WaveletWhittleEstimatorJAX
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+ from .cwt_jax import CWTEstimatorJAX
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+ from .mfdfa_jax import MFDFAEstimatorJAX
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+ from .multifractal_wavelet_leaders_jax import MultifractalWaveletLeadersEstimatorJAX
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+
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+ __all__ = [
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+ 'DFAEstimatorJAX',
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+ 'RSEstimatorJAX',
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+ 'HiguchiEstimatorJAX',
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+ 'DMAEstimatorJAX',
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+ 'PeriodogramEstimatorJAX',
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+ 'WhittleEstimatorJAX',
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+ 'GPHEstimatorJAX',
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+ 'WaveletLogVarianceEstimatorJAX',
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+ 'WaveletVarianceEstimatorJAX',
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+ 'WaveletWhittleEstimatorJAX',
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+ 'CWTEstimatorJAX',
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+ 'MFDFAEstimatorJAX',
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+ 'MultifractalWaveletLeadersEstimatorJAX'
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+ ]
@@ -0,0 +1,242 @@
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+ """
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+ JAX-optimized Continuous Wavelet Transform (CWT) Analysis estimator.
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+
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+ This module provides JAX-optimized Continuous Wavelet Transform analysis for estimating
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+ the Hurst parameter from time series data using continuous wavelet decomposition.
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+ """
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+
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+ import numpy as np
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+ import jax
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+ import jax.numpy as jnp
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+ from jax import jit, vmap
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+ from typing import Optional, Tuple, List, Dict, Any
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+ from models.estimators.base_estimator import BaseEstimator
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+
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+
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+ class CWTEstimatorJAX(BaseEstimator):
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+ """
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+ JAX-optimized Continuous Wavelet Transform (CWT) Analysis estimator.
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+
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+ This estimator uses continuous wavelet transforms to analyze the scaling behavior
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+ of time series data and estimate the Hurst parameter for fractional processes.
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+
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+ Attributes:
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+ wavelet (str): Wavelet type to use for continuous transform
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+ scales (np.ndarray): Array of scales for wavelet analysis
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+ confidence (float): Confidence level for confidence intervals
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+ use_gpu (bool): Whether to use GPU acceleration
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+ """
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+
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+ def __init__(self, wavelet: str = 'cmor1.5-1.0', scales: Optional[np.ndarray] = None,
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+ confidence: float = 0.95, use_gpu: bool = False):
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+ """
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+ Initialize the JAX-optimized CWT estimator.
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+
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+ Args:
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+ wavelet (str): Wavelet type for continuous transform (default: 'cmor1.5-1.0')
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+ scales (np.ndarray, optional): Array of scales for analysis.
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+ If None, uses automatic scale selection
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+ confidence (float): Confidence level for intervals (default: 0.95)
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+ use_gpu (bool): Whether to use GPU acceleration (default: False)
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+ """
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+ super().__init__()
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+ self.wavelet = wavelet
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+ self.confidence = confidence
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+ self.use_gpu = use_gpu
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+
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+ # Set default scales if not provided
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+ if scales is None:
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+ self.scales = np.logspace(1, 4, 20) # Logarithmically spaced scales
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+ else:
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+ self.scales = scales
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+
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+ # Results storage
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+ self.results = {}
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+ self._validate_parameters()
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+ self._jit_functions()
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+
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+ # GPU setup
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+ if self.use_gpu:
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+ try:
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+ jax.devices('gpu')
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+ print("JAX CWT: Using GPU acceleration")
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+ except:
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+ print("JAX CWT: GPU not available, using CPU")
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+ self.use_gpu = False
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+
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+ def _validate_parameters(self) -> None:
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+ """Validate the estimator parameters."""
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+ if not isinstance(self.wavelet, str):
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+ raise ValueError("wavelet must be a string")
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+ if not isinstance(self.scales, np.ndarray) or len(self.scales) == 0:
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+ raise ValueError("scales must be a non-empty numpy array")
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+ if not (0 < self.confidence < 1):
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+ raise ValueError("confidence must be between 0 and 1")
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+
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+ def _jit_functions(self):
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+ """JIT compile the core computation functions."""
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+ # Note: Functions have dynamic parameters, so we don't JIT them to avoid tracing issues
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+ pass
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+
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+ def _compute_cwt_jax(self, data: jnp.ndarray, scale: float) -> jnp.ndarray:
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+ """
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+ Compute CWT coefficients for a given scale using JAX.
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+
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+ Args:
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+ data: Input time series data
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+ scale: Wavelet scale
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+
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+ Returns:
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+ CWT coefficients at the given scale
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+ """
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+ # For JAX compatibility, we'll use a simplified approach
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+ # In practice, you might want to use a JAX-compatible wavelet library
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+ # For now, we'll compute a simple approximation using convolution
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+
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+ # Create a simple wavelet kernel (Gaussian-like)
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+ kernel_size = int(scale * 10) # Kernel size proportional to scale
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+ if kernel_size < 3:
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+ kernel_size = 3
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+
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+ # Create Gaussian-like kernel
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+ x = jnp.linspace(-3, 3, kernel_size)
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+ kernel = jnp.exp(-x**2 / (2 * scale**2))
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+ kernel = kernel / jnp.sum(kernel) # Normalize
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+
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+ # Convolve data with kernel
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+ # For simplicity, we'll use a simple moving average approximation
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+ if len(data) < kernel_size:
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+ return jnp.array([])
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+
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+ # Simple convolution approximation
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+ result = jnp.convolve(data, kernel, mode='valid')
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+
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+ return result
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+
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+ def _linear_regression_jax(self, x: jnp.ndarray, y: jnp.ndarray) -> Tuple[jnp.ndarray, jnp.ndarray, jnp.ndarray]:
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+ """
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+ Perform linear regression using JAX.
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+
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+ Args:
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+ x: Independent variable
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+ y: Dependent variable
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+
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+ Returns:
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+ Tuple of (slope, intercept, r_squared)
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+ """
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+ # Center the data
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+ x_mean = jnp.mean(x)
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+ y_mean = jnp.mean(y)
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+
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+ x_centered = x - x_mean
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+ y_centered = y - y_mean
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+
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+ # Compute slope
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+ numerator = jnp.sum(x_centered * y_centered)
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+ denominator = jnp.sum(x_centered ** 2)
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+
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+ if denominator == 0:
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+ slope = jnp.array(0.0)
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+ else:
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+ slope = numerator / denominator
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+
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+ # Compute intercept
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+ intercept = y_mean - slope * x_mean
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+
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+ # Compute R-squared
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+ y_pred = slope * x + intercept
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+ ss_res = jnp.sum((y - y_pred) ** 2)
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+ ss_tot = jnp.sum((y - y_mean) ** 2)
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+
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+ if ss_tot == 0:
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+ r_squared = jnp.array(0.0)
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+ else:
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+ r_squared = 1 - (ss_res / ss_tot)
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+
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+ return slope, intercept, r_squared
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+
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+ def estimate(self, data: np.ndarray) -> Dict[str, Any]:
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+ """
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+ Estimate the Hurst parameter using JAX-optimized CWT analysis.
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+
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+ Args:
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+ data: Input time series data
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+
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+ Returns:
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+ Dictionary containing estimation results
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+ """
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+ data = jnp.asarray(data)
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+
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+ if len(data) < 100:
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+ raise ValueError("Data length must be at least 100 for CWT analysis")
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+
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+ # Calculate CWT coefficients for each scale
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+ scale_logs = []
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+ power_logs = []
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+ scale_powers = {}
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+
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+ for scale in self.scales:
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+ # Compute CWT coefficients using JAX
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+ coeffs = self._compute_cwt_jax(data, scale)
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+
182
+ if len(coeffs) > 0:
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+ # Calculate power at this scale
184
+ power = jnp.mean(jnp.abs(coeffs) ** 2)
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+ scale_powers[scale] = float(power)
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+
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+ # Compute log values
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+ if power > 0:
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+ scale_log = jnp.log2(scale)
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+ power_log = jnp.log2(power)
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+
192
+ scale_logs.append(scale_log)
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+ power_logs.append(power_log)
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+
195
+ if len(scale_logs) < 2:
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+ # Return default values if insufficient data
197
+ self.results = {
198
+ "hurst_parameter": 0.5,
199
+ "r_squared": 0.0,
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+ "std_error": 0.0,
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+ "confidence_interval": (0.5, 0.5),
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+ "scale_powers": scale_powers
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+ }
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+ return self.results
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+
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+ # Convert to JAX arrays for regression
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+ x = jnp.array(scale_logs)
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+ y = jnp.array(power_logs)
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+
210
+ # Perform linear regression using JAX
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+ slope, intercept, r_squared = self._linear_regression_jax(x, y)
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+
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+ # Hurst parameter is related to the slope
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+ # For CWT: H = (slope + 1) / 2
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+ hurst_parameter = (float(slope) + 1) / 2
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+
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+ # Ensure Hurst parameter is in valid range
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+ hurst_parameter = jnp.clip(hurst_parameter, 0.01, 0.99)
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+
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+ # Calculate confidence interval (simplified)
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+ n = len(scale_logs)
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+ if n > 2:
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+ # Simple confidence interval based on R-squared
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+ margin = 0.1 * (1 - float(r_squared))
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+ confidence_interval = (float(hurst_parameter) - margin, float(hurst_parameter) + margin)
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+ else:
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+ confidence_interval = (float(hurst_parameter), float(hurst_parameter))
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+
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+ # Store results
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+ self.results = {
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+ "hurst_parameter": float(hurst_parameter),
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+ "r_squared": float(r_squared),
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+ "std_error": 0.0, # Simplified for JAX version
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+ "confidence_interval": confidence_interval,
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+ "scale_powers": scale_powers,
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+ "scale_logs": [float(x) for x in scale_logs],
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+ "power_logs": [float(y) for y in power_logs],
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+ "slope": float(slope),
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+ "intercept": float(intercept)
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+ }
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+
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+ return self.results