loqusdb 2.7.8__py3-none-any.whl → 2.7.9__py3-none-any.whl

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Files changed (7) hide show
  1. loqusdb/__init__.py +1 -1
  2. loqusdb/build_models/case.py +3 -10
  3. {loqusdb-2.7.8.dist-info → loqusdb-2.7.9.dist-info}/METADATA +1 -1
  4. {loqusdb-2.7.8.dist-info → loqusdb-2.7.9.dist-info}/RECORD +7 -7
  5. {loqusdb-2.7.8.dist-info → loqusdb-2.7.9.dist-info}/LICENSE +0 -0
  6. {loqusdb-2.7.8.dist-info → loqusdb-2.7.9.dist-info}/WHEEL +0 -0
  7. {loqusdb-2.7.8.dist-info → loqusdb-2.7.9.dist-info}/entry_points.txt +0 -0
loqusdb/__init__.py CHANGED
@@ -4,7 +4,7 @@ from pymongo import ASCENDING, IndexModel
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  logger = logging.getLogger(__name__)
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- __version__ = "2.7.7"
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+ __version__ = "2.7.9"
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  INDEXES = {
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  "variant": [
loqusdb/build_models/case.py CHANGED
@@ -6,15 +6,8 @@ from loqusdb.models import Case, Individual
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  LOG = logging.getLogger(__name__)
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- def get_individual_positions(individuals):
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- """Return a dictionary with individual positions
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-
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- Args:
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- individuals(list): A list with vcf individuals in correct order
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-
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- Returns:
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- ind_pos(dict): Map from ind_id -> index position
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- """
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+ def get_individual_positions(individuals: list[str]) -> dict[str, int]:
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+ """Return a dictionary with individual positions."""
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  ind_pos = {}
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  if individuals:
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  for i, ind in enumerate(individuals):
@@ -35,7 +28,7 @@ def build_case(
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  matches=None,
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  profile_path=None,
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  ):
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- """Build a Case from the given information
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+ """Build a Case from the given information.
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  Args:
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  case(ped_parser.Family): A family object
{loqusdb-2.7.8.dist-info → loqusdb-2.7.9.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: loqusdb
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- Version: 2.7.8
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+ Version: 2.7.9
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  Summary: A simple observation count database
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  License: MIT
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  Author: Your Name
{loqusdb-2.7.8.dist-info → loqusdb-2.7.9.dist-info}/RECORD RENAMED
@@ -1,8 +1,8 @@
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  README.md,sha256=0-XD0EEYvCnenT07wkO0ZX6lJbzN8OC1cV3M9G47nps,4648
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- loqusdb/__init__.py,sha256=sFjIK3TyWddtJTl4jODvgEtOm7slGt7RgPCXQodzeUw,1687
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+ loqusdb/__init__.py,sha256=bPrTjntIZhomIrT7e5Ccqec_JGJu12lqU47CIxDKBuY,1687
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  loqusdb/__main__.py,sha256=8FGKySAGaWSzAYMj6HRsxeyiME3V01Idt7HrmN7pSYY,397
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  loqusdb/build_models/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- loqusdb/build_models/case.py,sha256=P3sfQkI_fH8u5iqecYWhV866lcHz4upWkepaea5MMIw,4255
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+ loqusdb/build_models/case.py,sha256=AByutEYK2N3kS9JFvyZfPKNZdCpZHCSD0nNHAgaU1Cs,4127
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  loqusdb/build_models/profile_variant.py,sha256=TbSxfVjESstS_FgbkOW4NQwMQVeTyhn9oc9yPZmDhzI,1021
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  loqusdb/build_models/variant.py,sha256=LviEaovB_s_-jaLM64x0NzqzilFr__NPgv4Vf49Rhbk,6939
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  loqusdb/commands/__init__.py,sha256=BXAN3UADgqPrkGczzjlLO9GyyQ96dnLnP7n92JlYHgo,603
@@ -90,8 +90,8 @@ tests/vcf_tools/test_check_vcf.py,sha256=bTZQOSbhXthRDwTmcfvf4sW-DMUdlpM7bBSDsmX
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  tests/vcf_tools/test_format_sv_variant.py,sha256=eeQ6XI6X2lNpsVaWecu5lfdRHrDh1XZvcz9UhL7j3qo,4375
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  tests/vcf_tools/test_format_variant.py,sha256=CfgCnrS5OvuIcUOCTUGCiDRUelk3fZgT7YQAytNPvvM,4176
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  tests/vcf_tools/test_vcf.py,sha256=Fc9tO1IgKFo_DCfj_GrsXGx9t_69xkWhn1ZCL7IXqLU,1563
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- loqusdb-2.7.8.dist-info/LICENSE,sha256=urpFcJXw3elN9kV2fFutc-lXegjuu2lqP_GSy8_CAbs,1054
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- loqusdb-2.7.8.dist-info/METADATA,sha256=UOIeCtiolAkOs_pt_-q0je9OTfjQHM2tSjo9wS8xdgE,5269
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- loqusdb-2.7.8.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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- loqusdb-2.7.8.dist-info/entry_points.txt,sha256=wFoWzEFjsSgXkj9FMQA8C9ihZoJ9R1XvbGuX9hEEI6E,52
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- loqusdb-2.7.8.dist-info/RECORD,,
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+ loqusdb-2.7.9.dist-info/LICENSE,sha256=urpFcJXw3elN9kV2fFutc-lXegjuu2lqP_GSy8_CAbs,1054
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+ loqusdb-2.7.9.dist-info/METADATA,sha256=MgxOiQRfJGXtgPKUeJuYLBKRJP6KMY0T9nMpZ4oM6a4,5269
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+ loqusdb-2.7.9.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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+ loqusdb-2.7.9.dist-info/entry_points.txt,sha256=wFoWzEFjsSgXkj9FMQA8C9ihZoJ9R1XvbGuX9hEEI6E,52
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+ loqusdb-2.7.9.dist-info/RECORD,,