looper 1.6.0a1__py3-none-any.whl → 1.6.0a3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- looper/_version.py +1 -1
- looper/cli_looper.py +6 -0
- looper/project.py +3 -5
- {looper-1.6.0a1.dist-info → looper-1.6.0a3.dist-info}/METADATA +2 -2
- {looper-1.6.0a1.dist-info → looper-1.6.0a3.dist-info}/RECORD +9 -9
- {looper-1.6.0a1.dist-info → looper-1.6.0a3.dist-info}/LICENSE.txt +0 -0
- {looper-1.6.0a1.dist-info → looper-1.6.0a3.dist-info}/WHEEL +0 -0
- {looper-1.6.0a1.dist-info → looper-1.6.0a3.dist-info}/entry_points.txt +0 -0
- {looper-1.6.0a1.dist-info → looper-1.6.0a3.dist-info}/top_level.txt +0 -0
looper/_version.py
CHANGED
@@ -1 +1 @@
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1
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-
__version__ = "1.6.
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1
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+
__version__ = "1.6.0a3"
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looper/cli_looper.py
CHANGED
@@ -495,6 +495,12 @@ def build_parser():
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help="Number of attributes to display",
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type=int,
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)
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parser.add_argument(
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"--commands",
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action="version",
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version="{}".format(" ".join(subparsers.choices.keys())),
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)
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+
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result.append(parser)
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return result
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looper/project.py
CHANGED
@@ -111,9 +111,7 @@ class Project(peppyProject):
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compute settings.
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"""
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-
def __init__(
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self, cfg=None, amendments=None, divcfg_path=None, runp=False, **kwargs
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):
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def __init__(self, cfg=None, amendments=None, divcfg_path=None, **kwargs):
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super(Project, self).__init__(cfg=cfg, amendments=amendments)
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prj_dict = kwargs.get("project_dict")
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pep_config = kwargs.get("pep_config", None)
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@@ -122,7 +120,7 @@ class Project(peppyProject):
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# init project from pephub pep_config:
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if prj_dict is not None and cfg is None:
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self.
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self._from_dict(prj_dict)
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self["_config_file"] = os.getcwd() # for finding pipeline interface
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self["pep_config"] = pep_config
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@@ -916,7 +914,7 @@ def make_set(items):
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try:
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# Check if user input single integer value for inclusion/exclusion criteria
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if len(items) == 1:
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items = list(map(
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items = list(map(str, items)) # list(int(items[0]))
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except:
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if isinstance(items, str):
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items = [items]
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.1
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Name: looper
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Version: 1.6.
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Version: 1.6.0a3
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Summary: A pipeline submission engine that parses sample inputs and submits pipelines for each sample.
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Home-page: https://github.com/pepkit/looper
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Author: Nathan Sheffield, Vince Reuter, Michal Stolarczyk, Johanna Klughammer, Andre Rendeiro
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@@ -23,7 +23,7 @@ Requires-Dist: logmuse >=0.2.0
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Requires-Dist: pandas >=2.0.2
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Requires-Dist: pephubclient >=0.1.2
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Requires-Dist: peppy >=0.40.0.a4
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-
Requires-Dist: pipestat >=
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Requires-Dist: pipestat >=0.6.0a9
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Requires-Dist: pyyaml >=3.12
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Requires-Dist: rich >=9.10.0
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Requires-Dist: ubiquerg >=0.5.2
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@@ -1,8 +1,8 @@
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looper/__init__.py,sha256=f_z9YY4ibOk7eyWoaViH_VaCXMlPQeiftbnibSFj-3E,1333
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looper/__main__.py,sha256=8CX2ae8mUQNI_Z8pdBT4i5UFqROFX1awyFnuYCKuYXg,238
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looper/_version.py,sha256=
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looper/_version.py,sha256=XJ3CHO0NspbDhCNVnNqwEtFi_KpbeDM87P9-mGN9EXs,24
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looper/cli_divvy.py,sha256=J07x83sqC4jJeu3_yS6KOARPWmwKGAV7JvN33T5zDac,5907
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looper/cli_looper.py,sha256=
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looper/cli_looper.py,sha256=unoNK8gtOg5r5T4vVhonoykegc7LzxCaxPPJfETon-g,25935
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looper/conductor.py,sha256=BmMATwtkHoPSsffYopCQ1WxK83O3UjOTFRrakgD6DzA,30231
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looper/const.py,sha256=bPj4lTuj2l6gwHROWqj16iHfJFo9ghZAz8THNREWW4U,8558
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looper/divvy.py,sha256=qa1ebbQTfNupAyDfhfEJ6mbZ_V3zk-D_E-Tck7miJ38,15688
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@@ -12,7 +12,7 @@ looper/parser_types.py,sha256=d3FHt54f9jo9VZMr5SQkbghcAdABqiYZW2JBGO5EBnw,2327
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looper/pipeline_interface.py,sha256=y46tB1_73d1FX8N1w4-GGvRBJ7rqhenuUYVtUfIhK5s,14974
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looper/plugins.py,sha256=MaMdPmK9U_4FkNJE5kccohBbY1i2qj1NTEucubFOJek,5747
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looper/processed_project.py,sha256=jZxoMYafvr-OHFxylc5ivGty1VwXBZhl0kgoFkY-174,9837
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looper/project.py,sha256=
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looper/project.py,sha256=nkNP7ftVs82Tnk2Yn6FUp60_D6bjE9sSvySE0SHqsmg,36171
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looper/utils.py,sha256=i7srIXPEnQjtNaoP0ziRpdYfB7HNY5_3rW5LoKIM15I,27257
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looper/default_config/divvy_config.yaml,sha256=wK5kLDGBV2wwoyqg2rl3X8SXjds4x0mwBUjUzF1Ln7g,1705
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looper/default_config/divvy_templates/localhost_bulker_template.sub,sha256=yn5VB9Brt7Hck9LT17hD2o8Kn-76gYJQk_A-8C1Gr4k,164
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@@ -55,9 +55,9 @@ looper/schemas/divvy_config_schema.yaml,sha256=7GJfKLc3VX4RGjHnOE1zxwsHXhj_ur9za
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looper/schemas/pipeline_interface_schema_generic.yaml,sha256=D16Rkpj03H9WnvA_N18iNU-hH_HwOuyESJ8Hk5hZSXc,1518
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looper/schemas/pipeline_interface_schema_project.yaml,sha256=-ZWyA0lKXWik3obuLNVk3IsAZYfbLVbCDvJnD-Fcluo,1567
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looper/schemas/pipeline_interface_schema_sample.yaml,sha256=x0OwVnijJpvm50DscvvJujdK4UAI7d71pqVemQS-D-0,1564
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looper-1.6.
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looper-1.6.
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looper-1.6.
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looper-1.6.
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looper-1.6.
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looper-1.6.
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looper-1.6.0a3.dist-info/LICENSE.txt,sha256=oB6ZGDa4kcznznJKJsLLFFcOZyi8Y6e2Jv0rJozgp-I,1269
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looper-1.6.0a3.dist-info/METADATA,sha256=lA597TjPwGmRcOQI1iaK-G5uYld4h5XXbX6zDQkYY5o,1740
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looper-1.6.0a3.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
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looper-1.6.0a3.dist-info/entry_points.txt,sha256=AEL1eb0gPLYvAEUewM35Ng4scXGZIWJK4Mxdj3Hm8Fw,83
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looper-1.6.0a3.dist-info/top_level.txt,sha256=I0Yf7djsoQAMzwHBbDiQi9hGtq4Z41_Ma5CX8qXG8Y8,7
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looper-1.6.0a3.dist-info/RECORD,,
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File without changes
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File without changes
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File without changes
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File without changes
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