local-deep-research 0.3.12__py3-none-any.whl → 0.4.1__py3-none-any.whl

local_deep_research/defaults/default_settings.json

@@ -194,6 +194,20 @@
         "value": 30000,
         "visible": true
     },
+    "llm.context_window_size": {
+        "category": "llm_parameters",
+        "description": "Maximum context window size in tokens for the LLM",
+        "editable": true,
+        "max_value": 20000000.0,
+        "min_value": 512.0,
+        "name": "Context Window Size",
+        "options": null,
+        "step": null,
+        "type": "LLM",
+        "ui_element": "number",
+        "value": 128000,
+        "visible": true
+    },
     "llm.supports_max_tokens": {
         "category": "llm_parameters",
         "description": "Whether the LLM API supports the 'max_tokens' option.",
@@ -624,6 +638,75 @@
         "value": false,
         "visible": true
     },
+    "search.journal_reputation.threshold": {
+        "category": "journal_quality_filter_parameters",
+        "description": "If enabled, journals with quality scores (scale from 1-10) below this threshold will be filtered out.",
+        "editable": true,
+        "max_value": 10,
+        "min_value": 1,
+        "name": "Journal Quality Threshold",
+        "options": null,
+        "step": 1,
+        "type": "SEARCH",
+        "ui_element": "range",
+        "value": 4,
+        "visible": true
+    },
+    "search.journal_reputation.max_context": {
+        "category": "journal_quality_filter_parameters",
+        "description": "Maximum number of characters to include in the prompt for journal quality checking.",
+        "editable": true,
+        "max_value": 1000000,
+        "min_value": 500,
+        "name": "Journal Quality Context Size",
+        "options": null,
+        "step": null,
+        "type": "SEARCH",
+        "ui_element": "number",
+        "value": 3000,
+        "visible": true
+    },
+    "search.journal_reputation.exclude_non_published": {
+        "category": "journal_quality_filter_parameters",
+        "description": "If true, quality filtering will exclude results that do not have a published journal reference.",
+        "editable": true,
+        "max_value": null,
+        "min_value": null,
+        "name": "Exclude Non-Published Results",
+        "options": null,
+        "step": null,
+        "type": "SEARCH",
+        "ui_element": "checkbox",
+        "value": false,
+        "visible": true
+    },
+    "search.journal_reputation.reanalysis_period": {
+        "category": "journal_quality_filter_parameters",
+        "description": "Period at which to re-check the quality of journals.",
+        "editable": true,
+        "max_value": null,
+        "min_value": null,
+        "name": "Quality Reanalysis Period",
+        "options": [
+            {
+                "label": "Yearly",
+                "value": "365"
+            },
+            {
+                "label": "Every 6 Months",
+                "value": "182"
+            },
+            {
+                "label": "Every Month",
+                "value": "30"
+            }
+        ],
+        "step": null,
+        "type": "SEARCH",
+        "ui_element": "select",
+        "value": "265",
+        "visible": true
+    },
     "search.snippets_only": {
         "category": "search_parameters",
         "description": "Only retrieve snippets instead of full search results",
@@ -778,6 +861,20 @@
         "value": "ArXivSearchEngine",
         "visible": true
     },
+    "search.engine.web.arxiv.journal_reputation.enabled": {
+        "category": "arxiv",
+        "description": "Enable journal quality filtering for this search engine.",
+        "editable": true,
+        "max_value": null,
+        "min_value": null,
+        "name": "Filter Low-Quality Journals",
+        "options": null,
+        "step": null,
+        "type": "SEARCH",
+        "ui_element": "checkbox",
+        "value": true,
+        "visible": true
+    },
     "search.engine.web.arxiv.default_params.max_results": {
         "category": "arxiv",
         "description": "Setting for arxiv.default_params.max_results",
@@ -3107,7 +3204,7 @@
         "step": 0.05,
         "type": "SEARCH",
         "ui_element": "range",
-        "value": 0.9,
+        "value": 1.0,
         "visible": true
     },
     "search.engine.web.searxng.requires_api_key": {
@@ -3136,12 +3233,16 @@
         "type": "SEARCH",
         "ui_element": "text",
         "value": [
-            "privacy-focused",
-            "metasearch engine",
-            "self-hosted",
-            "no tracking",
-            "configurable",
-            "multiple engines in one"
+            "comprehensive general information",
+            "current events and news",
+            "technical documentation",
+            "factual queries",
+            "historical information",
+            "consumer products",
+            "educational content",
+            "multi-source aggregation",
+            "real-time results",
+            "combined results from major search engines"
         ],
         "visible": true
     },

local_deep_research/search_system.py

@@ -1,8 +1,8 @@
 # src/local_deep_research/search_system/search_system.py
-import logging
 from typing import Callable, Dict
 
 from langchain_core.language_models import BaseChatModel
+from loguru import logger
 
 from .advanced_search_system.findings.repository import FindingsRepository
 from .advanced_search_system.questions.standard_question import (
@@ -23,8 +23,6 @@ from .config.search_config import get_search
 from .utilities.db_utils import get_db_setting
 from .web_search_engines.search_engine_base import BaseSearchEngine
 
-logger = logging.getLogger(__name__)
-
 
 class AdvancedSearchSystem:
     """
@@ -38,6 +36,8 @@ class AdvancedSearchSystem:
         use_cross_engine_filter: bool = True,
         llm: BaseChatModel | None = None,
         search: BaseSearchEngine | None = None,
+        max_iterations: int | None = None,
+        questions_per_iteration: int | None = None,
     ):
         """Initialize the advanced search system.
 
@@ -49,6 +49,11 @@ class AdvancedSearchSystem:
             llm: LLM to use. If not provided, it will use the default one.
             search: Search engine to use. If not provided, it will use the
                 default one.
+            max_iterations: The maximum number of search iterations to
+                perform. Will be read from the settings if not specified.
+            questions_per_iteration: The number of questions to include in
+                each iteration. Will be read from the settings if not specified.
+
         """
         # Get configuration
         self.model = llm
@@ -59,11 +64,14 @@ class AdvancedSearchSystem:
             self.search = get_search(llm_instance=self.model)
 
         # Get iterations setting
-        self.max_iterations = get_db_setting("search.iterations", 1)
-
-        self.questions_per_iteration = get_db_setting(
-            "search.questions_per_iteration", 3
-        )
+        self.max_iterations = max_iterations
+        if self.max_iterations is None:
+            self.max_iterations = get_db_setting("search.iterations", 1)
+        self.questions_per_iteration = questions_per_iteration
+        if self.questions_per_iteration is None:
+            self.questions_per_iteration = get_db_setting(
+                "search.questions_per_iteration", 3
+            )
 
         # Log the strategy name that's being used
         logger.info(

local_deep_research/utilities/db_utils.py

@@ -1,16 +1,13 @@
-import logging
 import os
 from functools import cache
 from typing import Any, Dict
 
+from loguru import logger
 from sqlalchemy import create_engine
 from sqlalchemy.orm import Session, sessionmaker
 
 from ..web.services.settings_manager import SettingsManager
 
-logger = logging.getLogger(__name__)
-
-
 # Database path.
 DATA_DIR = os.path.abspath(os.path.join(os.path.dirname(__file__), "..", "..", "data"))
 DB_PATH = os.path.join(DATA_DIR, "ldr.db")
@@ -57,8 +54,8 @@ def get_db_setting(
 
         if value is not None:
             return value
-    except Exception as e:
-        logger.error(f"Error getting setting {key} from database: {e}")
+    except Exception:
+        logger.exception(f"Error getting setting {key} from database")
 
     logger.warning(f"Could not find setting '{key}' in the database.")
     return default_value

local_deep_research/utilities/es_utils.py

@@ -0,0 +1,441 @@
+"""
+Elasticsearch utilities for indexing and managing documents.
+"""
+
+import json
+import logging
+import os
+from typing import Any, Dict, List, Optional, Union
+
+from elasticsearch import Elasticsearch
+from elasticsearch.helpers import bulk
+
+logger = logging.getLogger(__name__)
+
+
+class ElasticsearchManager:
+    """
+    Utility class for managing Elasticsearch indices and documents.
+    
+    This class provides methods for creating indices, indexing documents,
+    and performing other Elasticsearch management tasks.
+    """
+    
+    def __init__(
+        self,
+        hosts: List[str] = ["http://localhost:9200"],
+        username: Optional[str] = None,
+        password: Optional[str] = None,
+        api_key: Optional[str] = None,
+        cloud_id: Optional[str] = None,
+    ):
+        """
+        Initialize the Elasticsearch manager.
+        
+        Args:
+            hosts: List of Elasticsearch hosts
+            username: Optional username for authentication
+            password: Optional password for authentication
+            api_key: Optional API key for authentication
+            cloud_id: Optional Elastic Cloud ID
+        """
+        # Initialize the Elasticsearch client
+        es_args = {}
+        
+        # Basic authentication
+        if username and password:
+            es_args["basic_auth"] = (username, password)
+        
+        # API key authentication
+        if api_key:
+            es_args["api_key"] = api_key
+        
+        # Cloud ID for Elastic Cloud
+        if cloud_id:
+            es_args["cloud_id"] = cloud_id
+        
+        # Connect to Elasticsearch
+        self.client = Elasticsearch(hosts, **es_args)
+        
+        # Verify connection
+        try:
+            info = self.client.info()
+            logger.info(f"Connected to Elasticsearch cluster: {info.get('cluster_name')}")
+            logger.info(f"Elasticsearch version: {info.get('version', {}).get('number')}")
+        except Exception as e:
+            logger.error(f"Failed to connect to Elasticsearch: {str(e)}")
+            raise ConnectionError(f"Could not connect to Elasticsearch: {str(e)}")
+    
+    def create_index(
+        self,
+        index_name: str,
+        mappings: Optional[Dict[str, Any]] = None,
+        settings: Optional[Dict[str, Any]] = None,
+    ) -> bool:
+        """
+        Create an Elasticsearch index with optional mappings and settings.
+        
+        Args:
+            index_name: Name of the index to create
+            mappings: Optional mappings for the index fields
+            settings: Optional settings for the index
+            
+        Returns:
+            bool: True if successful, False otherwise
+        """
+        try:
+            # Check if index already exists
+            if self.client.indices.exists(index=index_name):
+                logger.warning(f"Index '{index_name}' already exists - skipping creation")
+                return True
+            
+            # Default mappings for better text search if none provided
+            if mappings is None:
+                mappings = {
+                    "properties": {
+                        "title": {
+                            "type": "text",
+                            "analyzer": "standard",
+                            "fields": {
+                                "keyword": {
+                                    "type": "keyword",
+                                    "ignore_above": 256
+                                }
+                            }
+                        },
+                        "content": {
+                            "type": "text",
+                            "analyzer": "standard"
+                        },
+                        "url": {
+                            "type": "keyword"
+                        },
+                        "source": {
+                            "type": "keyword"
+                        },
+                        "timestamp": {
+                            "type": "date"
+                        },
+                        "metadata": {
+                            "type": "object",
+                            "enabled": True
+                        }
+                    }
+                }
+            
+            # Default settings if none provided
+            if settings is None:
+                settings = {
+                    "number_of_shards": 1,
+                    "number_of_replicas": 0,
+                    "analysis": {
+                        "analyzer": {
+                            "standard": {
+                                "type": "standard"
+                            }
+                        }
+                    }
+                }
+            
+            # Create the index with mappings and settings
+            create_response = self.client.indices.create(
+                index=index_name,
+                mappings=mappings,
+                settings=settings,
+            )
+            
+            logger.info(f"Created index '{index_name}': {create_response}")
+            return True
+            
+        except Exception as e:
+            logger.error(f"Error creating index '{index_name}': {str(e)}")
+            return False
+    
+    def delete_index(self, index_name: str) -> bool:
+        """
+        Delete an Elasticsearch index.
+        
+        Args:
+            index_name: Name of the index to delete
+            
+        Returns:
+            bool: True if successful, False otherwise
+        """
+        try:
+            # Check if index exists
+            if not self.client.indices.exists(index=index_name):
+                logger.warning(f"Index '{index_name}' does not exist - skipping deletion")
+                return True
+            
+            # Delete the index
+            delete_response = self.client.indices.delete(index=index_name)
+            logger.info(f"Deleted index '{index_name}': {delete_response}")
+            return True
+            
+        except Exception as e:
+            logger.error(f"Error deleting index '{index_name}': {str(e)}")
+            return False
+    
+    def index_document(
+        self,
+        index_name: str,
+        document: Dict[str, Any],
+        document_id: Optional[str] = None,
+        refresh: bool = False,
+    ) -> Optional[str]:
+        """
+        Index a single document in Elasticsearch.
+        
+        Args:
+            index_name: Name of the index to add the document to
+            document: The document to index
+            document_id: Optional document ID (will be generated if not provided)
+            refresh: Whether to refresh the index after indexing
+            
+        Returns:
+            str: Document ID if successful, None otherwise
+        """
+        try:
+            # Index the document
+            response = self.client.index(
+                index=index_name,
+                document=document,
+                id=document_id,
+                refresh=refresh,
+            )
+            
+            logger.info(f"Indexed document in '{index_name}' with ID: {response['_id']}")
+            return response["_id"]
+            
+        except Exception as e:
+            logger.error(f"Error indexing document in '{index_name}': {str(e)}")
+            return None
+    
+    def bulk_index_documents(
+        self,
+        index_name: str,
+        documents: List[Dict[str, Any]],
+        id_field: Optional[str] = None,
+        refresh: bool = False,
+    ) -> int:
+        """
+        Bulk index multiple documents in Elasticsearch.
+        
+        Args:
+            index_name: Name of the index to add the documents to
+            documents: List of documents to index
+            id_field: Optional field in the documents to use as the document ID
+            refresh: Whether to refresh the index after indexing
+            
+        Returns:
+            int: Number of successfully indexed documents
+        """
+        try:
+            # Prepare the bulk actions
+            actions = []
+            for doc in documents:
+                action = {
+                    "_index": index_name,
+                    "_source": doc,
+                }
+                
+                # Use the specified field as the document ID if provided
+                if id_field and id_field in doc:
+                    action["_id"] = doc[id_field]
+                
+                actions.append(action)
+            
+            # Execute the bulk indexing
+            success, failed = bulk(
+                self.client,
+                actions,
+                refresh=refresh,
+                stats_only=True,
+            )
+            
+            logger.info(f"Bulk indexed {success} documents in '{index_name}', failed: {failed}")
+            return success
+            
+        except Exception as e:
+            logger.error(f"Error bulk indexing documents in '{index_name}': {str(e)}")
+            return 0
+    
+    def index_file(
+        self,
+        index_name: str,
+        file_path: str,
+        content_field: str = "content",
+        title_field: Optional[str] = "title",
+        extract_metadata: bool = True,
+        refresh: bool = False,
+    ) -> Optional[str]:
+        """
+        Index a file in Elasticsearch, extracting text content and metadata.
+        
+        Args:
+            index_name: Name of the index to add the document to
+            file_path: Path to the file to index
+            content_field: Field name to store the file content
+            title_field: Field name to store the file title (filename if not specified)
+            extract_metadata: Whether to extract file metadata
+            refresh: Whether to refresh the index after indexing
+            
+        Returns:
+            str: Document ID if successful, None otherwise
+        """
+        try:
+            from langchain_community.document_loaders import UnstructuredFileLoader
+            
+            # Extract file content and metadata
+            loader = UnstructuredFileLoader(file_path)
+            documents = loader.load()
+            
+            # Combine all content from the documents
+            content = "\n\n".join([doc.page_content for doc in documents])
+            
+            # Get the filename for the title
+            filename = os.path.basename(file_path)
+            title = filename
+            
+            # Prepare the document
+            document = {
+                content_field: content,
+            }
+            
+            # Add title if requested
+            if title_field:
+                document[title_field] = title
+            
+            # Add metadata if requested
+            if extract_metadata and documents:
+                # Include metadata from the first document
+                document["metadata"] = documents[0].metadata
+                
+                # Add file-specific metadata
+                document["source"] = file_path
+                document["file_extension"] = os.path.splitext(filename)[1].lstrip(".")
+                document["filename"] = filename
+            
+            # Index the document
+            return self.index_document(index_name, document, refresh=refresh)
+            
+        except ImportError:
+            logger.error("UnstructuredFileLoader not available. Please install the 'unstructured' package.")
+            return None
+        except Exception as e:
+            logger.error(f"Error indexing file '{file_path}': {str(e)}")
+            return None
+    
+    def index_directory(
+        self,
+        index_name: str,
+        directory_path: str,
+        file_patterns: List[str] = ["*.txt", "*.pdf", "*.docx", "*.md"],
+        content_field: str = "content",
+        title_field: str = "title",
+        extract_metadata: bool = True,
+        refresh: bool = False,
+    ) -> int:
+        """
+        Index all matching files in a directory in Elasticsearch.
+        
+        Args:
+            index_name: Name of the index to add the documents to
+            directory_path: Path to the directory containing files to index
+            file_patterns: List of file patterns to match (glob patterns)
+            content_field: Field name to store the file content
+            title_field: Field name to store the file title
+            extract_metadata: Whether to extract file metadata
+            refresh: Whether to refresh the index after indexing
+            
+        Returns:
+            int: Number of successfully indexed files
+        """
+        try:
+            import glob
+            
+            # Find all matching files
+            all_files = []
+            for pattern in file_patterns:
+                pattern_path = os.path.join(directory_path, pattern)
+                matching_files = glob.glob(pattern_path)
+                all_files.extend(matching_files)
+            
+            logger.info(f"Found {len(all_files)} files matching patterns {file_patterns} in {directory_path}")
+            
+            # Index each file
+            successful_count = 0
+            for file_path in all_files:
+                logger.info(f"Indexing file: {file_path}")
+                doc_id = self.index_file(
+                    index_name=index_name,
+                    file_path=file_path,
+                    content_field=content_field,
+                    title_field=title_field,
+                    extract_metadata=extract_metadata,
+                    refresh=refresh,
+                )
+                
+                if doc_id:
+                    successful_count += 1
+            
+            logger.info(f"Successfully indexed {successful_count} files out of {len(all_files)}")
+            return successful_count
+            
+        except Exception as e:
+            logger.error(f"Error indexing directory '{directory_path}': {str(e)}")
+            return 0
+    
+    def search(
+        self,
+        index_name: str,
+        query: str,
+        fields: List[str] = ["content", "title"],
+        size: int = 10,
+        highlight: bool = True,
+    ) -> Dict[str, Any]:
+        """
+        Search for documents in Elasticsearch.
+        
+        Args:
+            index_name: Name of the index to search
+            query: Search query
+            fields: Fields to search in
+            size: Maximum number of results to return
+            highlight: Whether to include highlighted excerpts in results
+            
+        Returns:
+            Dict: Elasticsearch search response
+        """
+        try:
+            search_query = {
+                "query": {
+                    "multi_match": {
+                        "query": query,
+                        "fields": fields,
+                        "type": "best_fields",
+                        "tie_breaker": 0.3,
+                    }
+                },
+                "size": size,
+            }
+            
+            # Add highlighting if requested
+            if highlight:
+                search_query["highlight"] = {
+                    "fields": {field: {} for field in fields},
+                    "pre_tags": ["<em>"],
+                    "post_tags": ["</em>"],
+                }
+            
+            # Execute the search
+            response = self.client.search(
+                index=index_name,
+                body=search_query,
+            )
+            
+            return response
+            
+        except Exception as e:
+            logger.error(f"Error searching index '{index_name}': {str(e)}")
+            return {"error": str(e)}