loaderx 0.5.0__py3-none-win_arm64.whl

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loaderx/__init__.py ADDED
@@ -0,0 +1,5 @@
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+ from ._zrecord import Zrecord, ZrecordError
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+ from .dataset import Dataset
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+ from .dataloader import DataLoader
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+
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+ __version__ = "0.5.0"
loaderx/_lib.py ADDED
@@ -0,0 +1,45 @@
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+ """Locate the bundled native library for the running platform.
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+
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+ A wheel carries the shared objects for exactly one platform, under the name
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+ that platform uses (`lib*.so`, `lib*.dylib`, `*.dll`). Resolving by name here
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+ keeps that detail out of the binding modules.
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+ """
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+
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+ import sys
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+ from pathlib import Path
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+
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+ LIB_DIR = Path(__file__).resolve().parent / "lib"
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+
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+
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+ def _filename(stem):
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+ if sys.platform == "win32":
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+ return f"{stem}.dll"
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+ if sys.platform == "darwin":
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+ return f"lib{stem}.dylib"
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+ return f"lib{stem}.so"
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+
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+
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+ def path(stem):
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+ """
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+ Absolute path to the bundled `stem` library.
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+
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+ Args:
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+ stem (str): Library name without prefix or extension, e.g. "zrecord".
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+
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+ Returns:
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+ str: Path to pass to `ffi.dlopen`.
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+
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+ Raises:
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+ ImportError: If the wheel carries no library for this platform.
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+ """
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+ found = LIB_DIR / _filename(stem)
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+ if found.is_file():
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+ return str(found)
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+
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+ present = sorted(p.name for p in LIB_DIR.glob("*") if p.suffix in (".so", ".dylib", ".dll"))
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+ raise ImportError(
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+ f"loaderx has no {stem} library for {sys.platform} ({found.name} not found in {LIB_DIR}).\n"
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+ f"Present: {present or 'nothing'}.\n"
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+ "From a source checkout, run `zig build` to produce it; otherwise this "
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+ "wheel was built for a different platform."
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+ )
loaderx/_sampler.py ADDED
@@ -0,0 +1,97 @@
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+ import time
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+
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+ import numpy as np
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+ from cffi import FFI
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+
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+ from . import _lib
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+
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+ ffi = FFI()
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+
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+ ffi.cdef("""
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+ typedef struct Sampler Sampler;
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+
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+ Sampler* cinit(
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+ uint64_t length,
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+ uint64_t batch_size,
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+ uint8_t mode,
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+ uint64_t seed
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+ );
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+
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+ void cdeinit(Sampler* s);
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+
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+ void cnext(Sampler* s, uint64_t* indices_ptr, size_t indices_len);
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+ """)
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+
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+ lib = ffi.dlopen(_lib.path("sampler"))
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+
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+ class Sampler:
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+ class Mode:
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+ SEQUENTIAL = 0
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+ IID = 1
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+
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+ def __init__(self, length: int, batch_size: int, mode: int, seed: int = 42):
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+ # sampler
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+ self.sampler = lib.cinit(length, batch_size, mode, seed)
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+ if self.sampler == ffi.NULL:
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+ raise MemoryError("Failed to create sampler")
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+ # indices
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+ self.indices = np.zeros(batch_size, dtype=np.uint64)
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+
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+ # step
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+ def next(self):
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+ ptr = ffi.cast("uint64_t *", self.indices.ctypes.data)
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+ lib.cnext(self.sampler, ptr, self.indices.size)
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+ # return copy to avoid loss
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+ return self.indices.copy()
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+
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+ # iterator
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+ def __iter__(self):
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+ return self
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+ def __next__(self):
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+ return self.next()
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+
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+ # clean
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+ def __del__(self):
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+ if hasattr(self, "sampler") and self.sampler != ffi.NULL:
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+ lib.cdeinit(self.sampler)
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+ self.sampler = ffi.NULL
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+
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+ def run():
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+ from itertools import islice
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+ length = 10
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+ batch_size = 4
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+ n_steps = 5
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+
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+ print("=== Sampler SEQUENTIAL ===")
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+ sampler = Sampler(length, batch_size, Sampler.Mode.SEQUENTIAL)
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+ for indices in islice(sampler, n_steps):
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+ print(indices)
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+
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+ print("=== Sampler IID ===")
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+ sampler = Sampler(length, batch_size, Sampler.Mode.IID)
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+ for indices in islice(sampler, n_steps):
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+ print(indices)
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+
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+ # Benchmark, zig-sampler speeder 3.66x
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+ def bench():
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+ length = 1_000_000
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+ batch_size = 8192
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+ n_steps = 10_000
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+
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+ print("=== NumPy IID ===")
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+ t0 = time.time()
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+ batch = np.zeros(batch_size, dtype=np.uint64)
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+ for _ in range(n_steps):
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+ batch[:] = np.random.randint(0, length, size=batch_size, dtype=np.uint64)
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+ print(f"{(time.time() - t0)*1000:.2f} ms")
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+
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+ print("=== Sampler IID ===")
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+ t0 = time.time()
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+ sampler = Sampler(length, batch_size, Sampler.Mode.IID)
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+ for _ in range(n_steps):
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+ sampler.next()
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+ print(f"{(time.time() - t0)*1000:.2f} ms")
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+
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+ if __name__ == "__main__":
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+ run()
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+ bench()
loaderx/_zrecord.py ADDED
@@ -0,0 +1,283 @@
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+ """Thin CFFI binding over the Zig zrecord runtime.
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+
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+ zrecord stores opaque byte records; type interpretation is the client's job
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+ (see :mod:`loaderx.dataset`). Every call below releases the GIL, so several
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+ loader threads can gather concurrently.
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+ """
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+
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+ import numpy as np
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+ from cffi import FFI
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+
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+ from . import _lib
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+
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+ ffi = FFI()
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+
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+ ffi.cdef("""
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+ typedef struct Zrecord Zrecord;
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+
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+ Zrecord* zr_open(const char* path_ptr, size_t path_len, int32_t* code);
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+ void zr_close(Zrecord* zr);
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+
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+ uint32_t zr_len(Zrecord* zr);
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+ int32_t zr_sync(Zrecord* zr);
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+ uint32_t zr_max_record_len(void);
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+
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+ int32_t zr_lengths(Zrecord* zr, const uint64_t* idxs, size_t n, uint32_t* out);
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+
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+ int32_t zr_gather(Zrecord* zr, const uint64_t* idxs, size_t n,
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+ uint8_t* dst, size_t dst_len, size_t stride);
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+ int32_t zr_gather_var(Zrecord* zr, const uint64_t* idxs, size_t n,
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+ uint8_t* dst, size_t dst_len, const uint64_t* offsets);
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+
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+ int64_t zr_append(Zrecord* zr, const uint8_t* src, size_t src_len, size_t n,
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+ size_t stride, size_t item_len, uint8_t codec);
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+ int64_t zr_append_var(Zrecord* zr, const uint8_t* src, size_t src_len, size_t n,
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+ const uint64_t* offsets, const uint32_t* lens, uint8_t codec);
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+
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+ int32_t zr_delete(Zrecord* zr, const uint64_t* idxs, size_t n);
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+ int32_t zr_compact(Zrecord* zr);
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+ void zr_stats(Zrecord* zr, uint32_t* records, uint64_t* live_bytes, uint64_t* chunk_bytes);
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+ """)
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+
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+ lib = ffi.dlopen(_lib.path("zrecord"))
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+
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+ # Compression tags. Must match `Codec` in src/zrecord.zig.
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+ CODECS = {"raw": 0, "flate": 1}
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+
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+ MAX_RECORD_LEN = lib.zr_max_record_len()
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+
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+ # Must match `Code` in src/zrecord.zig.
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+ _ERRORS = {
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+ -1: "out of memory",
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+ -2: "file I/O failed",
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+ -3: "index out of range",
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+ -4: f"record exceeds the {MAX_RECORD_LEN} byte limit",
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+ -5: "store is full",
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+ -6: "buffer too small",
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+ -7: "stored record failed to decode",
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+ -8: "not a zrecord store, or written by a newer version",
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+ }
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+
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+
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+ class ZrecordError(RuntimeError):
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+ def __init__(self, code):
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+ super().__init__(_ERRORS.get(code, f"unknown zrecord error {code}"))
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+ self.code = code
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+
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+
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+ def _check(code):
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+ if code < 0:
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+ raise ZrecordError(code)
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+ return code
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+
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+
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+ def _u64(array):
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+ """View `array` as a C-contiguous uint64 buffer, copying only if needed."""
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+ return np.ascontiguousarray(array, dtype=np.uint64)
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+
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+
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+ def _ptr(ctype, array):
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+ return ffi.cast(ctype, array.ctypes.data)
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+
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+
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+ def _flat(array, name):
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+ """Assert `array` is safe to hand over as a flat byte range."""
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+ if not array.flags.c_contiguous:
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+ raise ValueError(f"{name} must be C-contiguous")
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+ return array
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+
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+
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+ class Zrecord:
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+ """A zrecord store: an unordered, append-only collection of byte records.
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+
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+ Indices are stable — once assigned, a record's index never changes meaning.
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+ """
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+
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+ def __init__(self, path, codec="flate"):
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+ """
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+ Open (or create) the store at `path`.
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+
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+ Args:
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+ path (str | Path): Directory holding the store.
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+ codec (str): Default compression for `append`; "raw" or "flate".
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+ """
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+ if codec not in CODECS:
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+ raise ValueError(f"unknown codec {codec!r}, expected one of {sorted(CODECS)}")
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+
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+ # cffi converts `bytes` to `const char*` and keeps it alive for the call.
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+ raw = str(path).encode()
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+ code = ffi.new("int32_t*", -2)
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+ self._zr = lib.zr_open(raw, len(raw), code)
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+ if self._zr == ffi.NULL:
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+ raise ZrecordError(code[0])
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+ self.codec = codec
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+
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+ def __len__(self):
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+ return lib.zr_len(self._zr)
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+
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+ def sync(self):
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+ """Flush chunk data and the record table to disk."""
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+ _check(lib.zr_sync(self._zr))
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+
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+ def lengths(self, idxs):
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+ """
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+ Return the logical (uncompressed) size of each requested record.
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+
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+ Args:
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+ idxs (array-like of int): Record indices.
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+
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+ Returns:
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+ np.ndarray: uint32 sizes in bytes.
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+ """
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+ idxs = _u64(idxs)
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+ out = np.empty(idxs.size, dtype=np.uint32)
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+ _check(lib.zr_lengths(
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+ self._zr, _ptr("const uint64_t*", idxs), idxs.size, _ptr("uint32_t*", out),
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+ ))
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+ return out
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+
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+ def gather(self, idxs, dst, stride):
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+ """
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+ Decompress records `idxs` straight into `dst`, one every `stride` bytes.
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+
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+ `dst` is written in place — no intermediate buffer is allocated.
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+
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+ Args:
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+ idxs (np.ndarray): uint64 record indices.
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+ dst (np.ndarray): C-contiguous destination buffer.
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+ stride (int): Byte distance between consecutive record slots.
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+ """
150
+ idxs = _u64(idxs)
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+ _flat(dst, "dst")
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+ _check(lib.zr_gather(
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+ self._zr, _ptr("const uint64_t*", idxs), idxs.size,
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+ _ptr("uint8_t*", dst), dst.nbytes, stride,
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+ ))
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+
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+ def gather_var(self, idxs, dst, offsets):
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+ """
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+ Decompress ragged records `idxs` into `dst` at explicit byte `offsets`.
160
+
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+ Args:
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+ idxs (np.ndarray): uint64 record indices.
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+ dst (np.ndarray): C-contiguous destination buffer.
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+ offsets (np.ndarray): uint64 byte offset of each record within `dst`.
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+ """
166
+ idxs = _u64(idxs)
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+ offsets = _u64(offsets)
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+ _flat(dst, "dst")
169
+ _check(lib.zr_gather_var(
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+ self._zr, _ptr("const uint64_t*", idxs), idxs.size,
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+ _ptr("uint8_t*", dst), dst.nbytes, _ptr("const uint64_t*", offsets),
172
+ ))
173
+
174
+ def append(self, src, n, item_len, codec=None):
175
+ """
176
+ Append `n` equally sized records taken from `src`.
177
+
178
+ Args:
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+ src (np.ndarray): C-contiguous buffer of `n * item_len` bytes.
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+ n (int): Number of records.
181
+ item_len (int): Size of each record in bytes.
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+ codec (str, optional): Override the store's default compression.
183
+
184
+ Returns:
185
+ int: Index assigned to the first appended record.
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+ """
187
+ tag = CODECS[codec or self.codec]
188
+ _flat(src, "src")
189
+ return _check(lib.zr_append(
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+ self._zr, _ptr("const uint8_t*", src), src.nbytes,
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+ n, item_len, item_len, tag,
192
+ ))
193
+
194
+ def append_var(self, src, offsets, lens, codec=None):
195
+ """
196
+ Append ragged records; record `i` is `src[offsets[i]:][:lens[i]]`.
197
+
198
+ Args:
199
+ src (np.ndarray): C-contiguous source buffer.
200
+ offsets (np.ndarray): uint64 byte offset of each record.
201
+ lens (np.ndarray): uint32 byte length of each record.
202
+ codec (str, optional): Override the store's default compression.
203
+
204
+ Returns:
205
+ int: Index assigned to the first appended record.
206
+ """
207
+ tag = CODECS[codec or self.codec]
208
+ _flat(src, "src")
209
+ offsets = _u64(offsets)
210
+ lens = np.ascontiguousarray(lens, dtype=np.uint32)
211
+ return _check(lib.zr_append_var(
212
+ self._zr, _ptr("const uint8_t*", src), src.nbytes, lens.size,
213
+ _ptr("const uint64_t*", offsets), _ptr("const uint32_t*", lens), tag,
214
+ ))
215
+
216
+ def delete(self, idxs):
217
+ """
218
+ Remove records, keeping the index space dense.
219
+
220
+ The tail of the table is swapped into each hole, so afterwards the live
221
+ records are exactly `0..len(self)`. The trade-off is that deletion moves
222
+ records: an index naming a survivor may name a different survivor
223
+ afterwards. Indices are stable only while nothing is deleted.
224
+
225
+ Only the table changes. The removed bytes stay on disk until `compact`.
226
+
227
+ Must not run concurrently with reads.
228
+
229
+ Args:
230
+ idxs (array-like of int): Record indices to remove. Duplicates and
231
+ any order are fine.
232
+ """
233
+ idxs = _u64(idxs)
234
+ _check(lib.zr_delete(self._zr, _ptr("const uint64_t*", idxs), idxs.size))
235
+
236
+ def compact(self):
237
+ """
238
+ Reclaim the space left behind by `delete`, in place.
239
+
240
+ Offline operation: nothing else may touch the store while it runs. Safe
241
+ to interrupt — records are moved one at a time and the table is updated
242
+ as each lands, so re-running finishes the job.
243
+ """
244
+ _check(lib.zr_compact(self._zr))
245
+
246
+ def stats(self):
247
+ """
248
+ Report storage usage.
249
+
250
+ Returns:
251
+ dict: `records`, `live_bytes` (what the live records occupy),
252
+ `chunk_bytes` (how far the chunk files have grown) and
253
+ `reclaimable` (an upper bound on what `compact` would free —
254
+ it also counts the chunk-boundary slack compaction cannot
255
+ remove).
256
+ """
257
+ records = ffi.new("uint32_t*")
258
+ live = ffi.new("uint64_t*")
259
+ chunk = ffi.new("uint64_t*")
260
+ lib.zr_stats(self._zr, records, live, chunk)
261
+ return {
262
+ "records": records[0],
263
+ "live_bytes": live[0],
264
+ "chunk_bytes": chunk[0],
265
+ "reclaimable": chunk[0] - live[0],
266
+ }
267
+
268
+ # statement
269
+ def __enter__(self):
270
+ return self
271
+
272
+ def __exit__(self, exc_type, exc_val, exc_tb):
273
+ self.close()
274
+
275
+ # close
276
+ def close(self):
277
+ zr = getattr(self, "_zr", ffi.NULL)
278
+ if zr != ffi.NULL:
279
+ lib.zr_close(zr)
280
+ self._zr = ffi.NULL
281
+
282
+ def __del__(self):
283
+ self.close()
loaderx/dataloader.py ADDED
@@ -0,0 +1,98 @@
1
+ import threading
2
+ import numpy as np
3
+ from queue import Queue
4
+
5
+ from ._sampler import Sampler
6
+
7
+ class DataLoader:
8
+ def __init__(self, dataset, labelset, num_workers=4, batch_size=256, prefetch_size=4, mode=1, seed=42, transform=(lambda x: x)):
9
+ """
10
+ Initialize a DataLoader.
11
+
12
+ Args:
13
+ dataset (BaseDataset): The dataset to load from.
14
+ labelset (BaseDataset): The labelset to load from.
15
+ batch_size (int, optional): The batch size to use. Defaults to 256.
16
+ prefetch_size (int, optional): The number of batches to prefetch. Defaults to 8.
17
+ mode (int, optional):
18
+ seed (int, optional): The seed to use for shuffling. Defaults to 42.
19
+ transform (callable, optional): A function to apply to the data and label. Defaults to lambda x: x.
20
+
21
+ Raises:
22
+ ValueError: If the dataset and labelset have different lengths.
23
+ """
24
+ self.dataset = dataset
25
+ self.labelset = labelset
26
+ if len(dataset) != len(labelset):
27
+ raise ValueError("dataset and labelset must have the same length")
28
+
29
+ self.indices = Queue(maxsize=prefetch_size)
30
+ self.batches = Queue(maxsize=prefetch_size)
31
+
32
+ self.sampler = Sampler(len(dataset), batch_size, mode, seed)
33
+
34
+ self.stop_signal = threading.Event()
35
+
36
+ self.threads = [
37
+ threading.Thread(target=self._sampler),
38
+ *[threading.Thread(target=self._prefetch, args=(transform, )) for _ in range(num_workers)]
39
+ ]
40
+
41
+ for thread in self.threads:
42
+ thread.daemon = True
43
+ thread.start()
44
+
45
+ def _sampler(self):
46
+ """
47
+ Sample indices from the dataset and put them into the index queue.
48
+ """
49
+ while not self.stop_signal.is_set():
50
+ self.indices.put(self.sampler.next())
51
+
52
+ def _prefetch(self, transform):
53
+ """
54
+ Fetch the data and label from the dataset and labelset based on the indices
55
+ in the index queue and put them into the batches queue.
56
+ """
57
+ while not self.stop_signal.is_set():
58
+ idxs = self.indices.get()
59
+ data, label = transform((self.dataset.__getitems__(idxs), self.labelset.__getitems__(idxs)))
60
+ self.batches.put({'data': data, 'label': label})
61
+
62
+ def __len__(self):
63
+ """
64
+ Raises a TypeError since an external loader has no length.
65
+ """
66
+ raise TypeError("Eternal loader has no length.")
67
+
68
+ # iterator
69
+ def __iter__(self):
70
+ return self
71
+ def __next__(self):
72
+ # debug: monitor bottlenecks
73
+ # print(self.indices.qsize(), self.batches.qsize())
74
+ return self.batches.get()
75
+
76
+ # statement
77
+ def __enter__(self):
78
+ return self
79
+
80
+ def __exit__(self, exc_type, exc_val, exc_tb):
81
+ self.close()
82
+
83
+ # close
84
+ def close(self):
85
+ self.stop_signal.set()
86
+
87
+ for queue in [self.indices, self.batches]:
88
+ while not queue.empty():
89
+ try:
90
+ queue.get_nowait()
91
+ except:
92
+ break
93
+
94
+ for thread in self.threads:
95
+ thread.join()
96
+
97
+ def __del__(self):
98
+ self.close()
loaderx/dataset.py ADDED
@@ -0,0 +1,222 @@
1
+ """NumPy-shaped view over a zrecord store.
2
+
3
+ zrecord returns raw bytes, so the tensor type lives here: a small `schema.json`
4
+ inside the store records the per-sample dtype and shape. Reads decompress
5
+ directly into the freshly allocated output array — the bytes are never staged
6
+ in a temporary buffer.
7
+ """
8
+
9
+ import json
10
+ from pathlib import Path
11
+
12
+ import numpy as np
13
+
14
+ from ._zrecord import MAX_RECORD_LEN, CODECS, Zrecord
15
+
16
+ SCHEMA = "schema.json"
17
+ FORMAT = "loaderx-zrecord"
18
+
19
+ # Bytes of source data handed to a single append call. Caps the compression
20
+ # arena the Zig side allocates while still giving every worker plenty to chew on.
21
+ WRITE_CHUNK_BYTES = 64 << 20
22
+
23
+
24
+ class Dataset:
25
+ def __init__(self, path):
26
+ """
27
+ Open a dataset.
28
+
29
+ Args:
30
+ path (str | Path): Directory of a zrecord store written by
31
+ `Dataset.write`.
32
+
33
+ Raises:
34
+ FileNotFoundError: If `path` holds no loaderx schema.
35
+ """
36
+ self.path = Path(path)
37
+
38
+ schema_path = self.path / SCHEMA
39
+ if not schema_path.is_file():
40
+ raise FileNotFoundError(
41
+ f"{schema_path} not found; {self.path} is not a loaderx dataset"
42
+ )
43
+ schema = json.loads(schema_path.read_text())
44
+ if schema.get("format") != FORMAT:
45
+ raise ValueError(f"{schema_path} is not a {FORMAT} schema")
46
+
47
+ self.dtype = np.dtype(schema["dtype"])
48
+ self.shape = tuple(schema["shape"])
49
+ self.codec = schema["codec"]
50
+
51
+ self._itemsize = int(np.prod(self.shape, dtype=np.int64)) * self.dtype.itemsize
52
+ self._store = Zrecord(self.path, codec=self.codec)
53
+
54
+ def __len__(self):
55
+ """
56
+ Return the number of samples in the dataset.
57
+
58
+ Returns:
59
+ int: The number of samples in the dataset.
60
+ """
61
+ return len(self._store)
62
+
63
+ def __getitem__(self, idx):
64
+ """
65
+ Get the item at index idx from the dataset.
66
+
67
+ Args:
68
+ idx (int | slice | array-like): Index, slice or fancy index.
69
+
70
+ Returns:
71
+ np.ndarray: A single sample for an integer index, otherwise a
72
+ stacked batch.
73
+ """
74
+ if isinstance(idx, (int, np.integer)):
75
+ if idx < 0:
76
+ idx += len(self)
77
+ return self.__getitems__(np.array([idx], dtype=np.uint64))[0]
78
+ if isinstance(idx, slice):
79
+ idx = np.arange(*idx.indices(len(self)))
80
+ return self.__getitems__(idx)
81
+
82
+ def __getitems__(self, idxs):
83
+ """
84
+ Get the items at index idxs from the dataset.
85
+
86
+ Args:
87
+ idxs (array-like of int): indices of the items to retrieve.
88
+
89
+ Returns:
90
+ np.ndarray: The items at index idxs, shaped `(len(idxs), *self.shape)`.
91
+ """
92
+ idxs = np.asarray(idxs)
93
+ # A boolean mask would otherwise cast to a run of 0s and 1s.
94
+ if idxs.dtype == np.bool_:
95
+ idxs = np.flatnonzero(idxs)
96
+ idxs = np.ascontiguousarray(idxs, dtype=np.uint64)
97
+ out = np.empty((idxs.size, *self.shape), dtype=self.dtype)
98
+ self._store.gather(idxs, out, self._itemsize)
99
+ return out
100
+
101
+ # write
102
+
103
+ @classmethod
104
+ def write(cls, path, array, codec="flate", chunk_bytes=WRITE_CHUNK_BYTES):
105
+ """
106
+ Persist `array` as a zrecord dataset, one record per leading-axis slice.
107
+
108
+ Streams through `array` in bounded chunks, so a `np.load(...,
109
+ mmap_mode='r')` array converts without being read into memory at once.
110
+
111
+ Args:
112
+ path (str | Path): Destination directory. Appends if it already
113
+ holds a compatible dataset.
114
+ array (array-like): Samples stacked along axis 0. A 1-D array is a
115
+ dataset of scalars, which is what a label set usually is.
116
+ codec (str): "flate" for transparent compression, "raw" to store
117
+ verbatim. Records that fail to shrink are stored raw regardless.
118
+ chunk_bytes (int): Upper bound on the bytes submitted per call.
119
+
120
+ Returns:
121
+ Dataset: The dataset, opened for reading.
122
+
123
+ Raises:
124
+ ValueError: If a sample exceeds the zrecord record size limit, or
125
+ the array does not match an existing dataset at `path`.
126
+ """
127
+ if codec not in CODECS:
128
+ raise ValueError(f"unknown codec {codec!r}, expected one of {sorted(CODECS)}")
129
+
130
+ array = np.asanyarray(array)
131
+ if array.ndim < 1:
132
+ raise ValueError("array must have a sample axis")
133
+
134
+ dtype = np.dtype(array.dtype)
135
+ shape = tuple(int(d) for d in array.shape[1:])
136
+ itemsize = int(np.prod(shape, dtype=np.int64)) * dtype.itemsize
137
+ if itemsize > MAX_RECORD_LEN:
138
+ raise ValueError(
139
+ f"sample of {itemsize} bytes exceeds the {MAX_RECORD_LEN} byte record limit"
140
+ )
141
+
142
+ path = Path(path)
143
+ path.mkdir(parents=True, exist_ok=True)
144
+
145
+ schema = {
146
+ "format": FORMAT,
147
+ "version": 1,
148
+ "dtype": dtype.str,
149
+ "shape": list(shape),
150
+ "codec": codec,
151
+ }
152
+ schema_path = path / SCHEMA
153
+ if schema_path.is_file():
154
+ existing = json.loads(schema_path.read_text())
155
+ if (existing.get("dtype"), tuple(existing.get("shape", ()))) != (dtype.str, shape):
156
+ raise ValueError(
157
+ f"{path} holds {existing.get('dtype')}{tuple(existing.get('shape', ()))} "
158
+ f"records, cannot append {dtype.str}{shape}"
159
+ )
160
+ schema = existing
161
+ else:
162
+ schema_path.write_text(json.dumps(schema, indent=2) + "\n")
163
+
164
+ step = max(1, chunk_bytes // max(itemsize, 1))
165
+ with Zrecord(path, codec=schema["codec"]) as store:
166
+ for start in range(0, len(array), step):
167
+ block = np.ascontiguousarray(array[start:start + step], dtype=dtype)
168
+ store.append(block, len(block), itemsize)
169
+ store.sync()
170
+
171
+ return cls(path)
172
+
173
+ def delete(self, idxs):
174
+ """
175
+ Remove samples, keeping the index space dense.
176
+
177
+ `len(self)` shrinks and the survivors stay addressable as
178
+ `0..len(self)`, which is what the sampler assumes. The tail of the
179
+ dataset is swapped into each hole, so surviving samples may change
180
+ index — hold no indices across a delete.
181
+
182
+ The removed bytes stay on disk until `compact`. Must not run
183
+ concurrently with reads, so do not call it while a `DataLoader` is
184
+ running over this dataset.
185
+
186
+ Args:
187
+ idxs (array-like of int): Indices to remove.
188
+ """
189
+ self._store.delete(idxs)
190
+
191
+ def compact(self):
192
+ """
193
+ Reclaim the space left behind by `delete`.
194
+
195
+ Offline operation: nothing else may touch the dataset while it runs.
196
+ """
197
+ self._store.compact()
198
+
199
+ def stats(self):
200
+ """
201
+ Report storage usage; see `loaderx.Zrecord.stats`.
202
+
203
+ Returns:
204
+ dict: record count and byte counters, including `reclaimable`.
205
+ """
206
+ return self._store.stats()
207
+
208
+ # statement
209
+
210
+ def __enter__(self):
211
+ return self
212
+
213
+ def __exit__(self, exc_type, exc_val, exc_tb):
214
+ self.close()
215
+
216
+ # close
217
+
218
+ def close(self):
219
+ store = getattr(self, "_store", None)
220
+ if store is not None:
221
+ store.close()
222
+ self._store = None
Binary file
Binary file
@@ -0,0 +1,334 @@
1
+ Metadata-Version: 2.4
2
+ Name: loaderx
3
+ Version: 0.5.0
4
+ Summary: A record-based data runtime, focused on delivering extreme throughput and low latency
5
+ Author-email: Ben0i0d <ben0i0d@foxmail.com>
6
+ License: MIT License
7
+
8
+ Copyright (c) 2025 EOELAB AI Research
9
+
10
+ Permission is hereby granted, free of charge, to any person obtaining a copy
11
+ of this software and associated documentation files (the "Software"), to deal
12
+ in the Software without restriction, including without limitation the rights
13
+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
14
+ copies of the Software, and to permit persons to whom the Software is
15
+ furnished to do so, subject to the following conditions:
16
+
17
+ The above copyright notice and this permission notice shall be included in all
18
+ copies or substantial portions of the Software.
19
+
20
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
21
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
22
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
23
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
24
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
25
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
26
+ SOFTWARE.
27
+
28
+ Project-URL: Homepage, https://codeberg.org/eoelab/loaderx
29
+ Project-URL: Documentation, https://codeberg.org/eoelab/loaderx
30
+ Project-URL: Source, https://codeberg.org/eoelab/loaderx
31
+ Project-URL: Bug Tracker, https://codeberg.org/eoelab/loaderx
32
+ Keywords: flax,python,dataloader
33
+ Classifier: Development Status :: 3 - Alpha
34
+ Classifier: Intended Audience :: Developers
35
+ Classifier: License :: OSI Approved :: MIT License
36
+ Classifier: Programming Language :: Python :: 3
37
+ Classifier: Operating System :: POSIX :: Linux
38
+ Classifier: Operating System :: MacOS :: MacOS X
39
+ Classifier: Operating System :: Microsoft :: Windows
40
+ Requires-Python: >=3.10
41
+ Description-Content-Type: text/markdown
42
+ License-File: LICENSE
43
+ Requires-Dist: numpy
44
+ Requires-Dist: cffi
45
+ Dynamic: license-file
46
+
47
+ # Loaderx
48
+ A compact, high-performance persistent record store with zero-copy batch gathering and transparent per-record compression, designed for single-machine AI training and serving pipelines.
49
+
50
+ ```
51
+ pip install loaderx
52
+ ```
53
+
54
+ Wheels are published for Linux (glibc ≥ 2.17 and musl, x86-64 and arm64), macOS
55
+ (≥ 11.0, Intel and Apple Silicon) and Windows (x64 and arm64). The bindings use
56
+ cffi in ABI mode, so nothing links against the CPython ABI and one wheel per
57
+ platform serves every supported Python.
58
+
59
+ ## Design Philosophy
60
+
61
+ loaderx is built around several core principles:
62
+
63
+ 1. A pragmatic approach that prioritizes minimal memory overhead and minimal dependencies.
64
+ 2. A strong focus on single-machine training workflows.
65
+ 3. We implement based on NumPy semantics, persisted through the Zrecord storage runtime.
66
+ 4. An **immortal (endless) step-based data loader**, rather than the traditional epoch-based design—better aligned with modern ML training practices.
67
+
68
+ ## Quick Start
69
+ ```python
70
+ from loaderx import Dataset, DataLoader
71
+
72
+ dataset = Dataset('train_data.zr')
73
+ labelset = Dataset('train_label.zr')
74
+
75
+ loader = DataLoader(dataset, labelset)
76
+
77
+ for i, batch in enumerate(loader):
78
+ if i >= 256:
79
+ break
80
+
81
+ print(batch['data'].shape)
82
+ print(batch['label'].shape)
83
+ ```
84
+
85
+ ### Converting a NumPy tensor
86
+ ```python
87
+ import numpy as np
88
+ from loaderx import Dataset
89
+
90
+ Dataset.write('train_data.zr', np.load('data.npy', mmap_mode='r'))
91
+ Dataset.write('train_label.zr', np.load('label.npy', mmap_mode='r'))
92
+ ```
93
+ One record per slice along axis 0; a 1-D array (the usual shape of a label set)
94
+ becomes a dataset of scalars. The conversion streams in bounded chunks, so an
95
+ mmapped array is never fully materialized.
96
+
97
+ `Dataset` keeps a single `schema.json` inside the store recording the per-sample
98
+ dtype and shape — that is the only loaderx-level metadata. Everything beneath it
99
+ is plain Zrecord, reachable through `loaderx.Zrecord` when you want raw byte
100
+ records (ragged samples, pre-encoded images) instead of tensors.
101
+
102
+ ### Removing samples
103
+ ```python
104
+ ds = Dataset('train_data.zr')
105
+ ds.delete([7, 12, 40]) # len shrinks; survivors stay addressable as 0..len
106
+ ds.compact() # reclaim the freed space on disk
107
+ print(ds.stats()) # {'records': ..., 'live_bytes': ..., 'reclaimable': ...}
108
+ ```
109
+ Deletion keeps the index space dense, which is what the sampler needs — but it
110
+ does so by moving the tail into the hole, so surviving samples may change index.
111
+ Do not hold indices across a delete. Both calls require exclusive access; do not
112
+ run them while a `DataLoader` is iterating the dataset.
113
+
114
+ ### Integrating with JAX/Flax
115
+
116
+ For practical integration examples, please refer to the **[Data2Latent](https://codeberg.org/eoelab/Data2Latent)** repository
117
+
118
+ ## Current Limitations
119
+ * Single-host only; multi-host training is not supported.
120
+ * A single sample must be at most 1 MiB, and a store holds at most 2^24
121
+ (16777216) records.
122
+ * Metadata is mapped and used in place, so a store carries the host's byte
123
+ order and is not portable to a machine of the opposite endianness. Every
124
+ published platform is little-endian, so this only matters if you build for
125
+ one yourself.
126
+
127
+ ## Build
128
+ ```
129
+ zig build # host shared objects, into loaderx/lib/
130
+ zig build test # Zrecord suite, in both Debug and ReleaseFast
131
+ zig build bench # append/gather throughput
132
+ python3 tests/test_loaderx.py # Python layer, against whichever build is importable
133
+ ```
134
+
135
+ Two things about the shared objects are deliberate rather than incidental:
136
+
137
+ * **libc is linked.** They are `dlopen`ed into CPython, and without libc they
138
+ export an unresolved `__tls_get_addr`, so Zig's thread-locals never bind and
139
+ `std.Thread` deadlocks on the first batch.
140
+ * **Tests run in ReleaseFast too.** The shipped libraries are ReleaseFast, and a
141
+ codegen difference there has already produced a release-blocking bug that
142
+ Debug did not have. Test the configuration that ships.
143
+
144
+ ### Publishing
145
+ Zig cross-compiles every target from one machine, so releases need no CI matrix:
146
+
147
+ ```
148
+ zig build dist # every platform, into zig-out/dist/<wheel tag>/
149
+ python3 scripts/build_wheels.py # one wheel per platform, plus the sdist
150
+ ```
151
+
152
+ The dist directories are named after their Python wheel platform tag, so the tag
153
+ mapping lives in exactly one place (`dist_targets` in `build.zig`). glibc and
154
+ macOS minimums are pinned in the target triple, which is what makes
155
+ `manylinux_2_17` and `macosx_11_0` honest rather than aspirational. Each wheel is
156
+ checked after packing: it must carry this platform's libraries and no others.
157
+
158
+ The sdist ships sources only. Installing from it runs `zig build` through
159
+ `setup.py`, so it needs the Zig compiler; wheel users never hit that path.
160
+
161
+ ---
162
+
163
+ # Zsampler
164
+ Index Generator: a high-performance sampler implemented in Zig
165
+
166
+ 1. Sequential generation: indices are produced by traversing the index space in order.
167
+ * Sliding traversal: indices are obtained using a fixed-size sliding window. Note that in this case, the index space is treated as a circular queue to avoid truncation at the tail.
168
+ 2. Random generation: indices are sampled randomly from the index space.
169
+ * Global random: a set of samples is drawn randomly from the entire index space.
170
+
171
+ ---
172
+
173
+ # Zrecord
174
+ A record-based data runtime, focused on delivering extreme throughput and low latency.
175
+
176
+ 1. Zrecord is an unordered physical store made of N records. Records are
177
+ independent and carry no ordering, so every index and slice operation is
178
+ equivalent to a gather.
179
+ 2. Zrecord hands the client a dense index space: the live records are always
180
+ exactly `0..N`. Deletion preserves that by swapping the tail into the hole,
181
+ which means an index is stable only until something is deleted. A
182
+ multi-stream dataset is purely a client-side notion; the client keeps its
183
+ own stream index table pointing at records.
184
+ 3. Zrecord returns byte arrays. Type interpretation is the client's job.
185
+ 4. For performance, the IO model (`append | read | delete`) is batch-oriented;
186
+ a single-record operation is just the `batch_size == 1` case.
187
+ 5. Zrecord owns its memory internally — allocation and release are explicit.
188
+ 6. Each record is compressed and decompressed independently:
189
+
190
+ ```
191
+ | tag | name | algorithm |
192
+ |-------|---------|-----------|
193
+ | 0 | raw | none |
194
+ | 1 | flate | Deflate |
195
+ ```
196
+
197
+ 7. Compression is transparent to the client:
198
+ * Compression runs concurrently across all cores. A record that fails to
199
+ shrink is stored raw automatically, so reading never costs more than the
200
+ data itself.
201
+ * Decompression writes straight into the caller's destination memory
202
+ (`gather`), with no intermediate buffer and no extra copy.
203
+
204
+ ## Persistence format
205
+ Zrecord storage is metadata plus chunked data:
206
+ ```
207
+ zrecord/
208
+ ├── meta.zr
209
+ ├── 0.zr
210
+ └── 1.zr
211
+ ```
212
+
213
+ ### Metadata (meta.zr)
214
+
215
+ meta.zr is **used as the values it holds, not decoded into them**. Both structs
216
+ below are `extern`, 16 bytes, and naturally aligned; an mmap is page aligned, so
217
+ the header is a `*Header` and the record table is a `[]RecordLoc`. Looking up a
218
+ record is `table[idx]`, and there is no serializer anywhere in the code.
219
+
220
+ The fields are deliberately wider than the limits need — `chunk_id` is a `u16`
221
+ for 4096 chunks, the lengths are `u32` for a 1 MiB cap. Bit-packing them would
222
+ save 5 bytes per record and cost a hand-written codec on the hottest lookup
223
+ path. The slack buys a machine-shaped array; it is worth it.
224
+
225
+ **1. Header** — 16 bytes of global state.
226
+ * `magic` (`ZREC`) and `version` are ordinary fields, so opening a directory
227
+ that is not a Zrecord store fails immediately instead of decoding garbage.
228
+ * `length` is the total number of records | `tail_chunk`/`tail_offset` mark the
229
+ last write position.
230
+ * There is no chunk count. Chunks are created in order and the frontier is
231
+ always in the last one, so the store holds exactly chunks `0..=tail_chunk` —
232
+ a count would be a second copy of that fact to keep in sync.
233
+
234
+ ```zig
235
+ const Header = extern struct {
236
+ magic: [4]u8, version: u16,
237
+ tail_chunk: u16, tail_offset: u32,
238
+ length: u32,
239
+ };
240
+ ```
241
+
242
+ **2. Record table** — 16 bytes per entry, indexed directly. Mapping an index to
243
+ a physical address is what makes random access efficient.
244
+ * `chunk_id` is the containing chunk | `offset` is the position within it |
245
+ `phys_length`/`logic_length` are the stored and original sizes | `compress` is
246
+ the algorithm.
247
+
248
+ ```zig
249
+ const Codec = enum(u8) { raw = 0, flate = 1, _ };
250
+ const RecordLoc = extern struct {
251
+ offset: u32, phys_length: u32, logic_length: u32,
252
+ chunk_id: u16, compress: Codec, _reserved: u8,
253
+ };
254
+ ```
255
+
256
+ There is no liveness flag. Every entry below `length` is live, because deletion
257
+ swaps the tail into the hole rather than tombstoning.
258
+
259
+ **3. Maximum length.** Running out of space is effectively impossible, so the
260
+ metadata is sized statically at the maximum.
261
+ * Current design: up to 2^12 (4096) chunks, 2^32 (4 GiB) per chunk, 2^20 (1 MiB)
262
+ per record.
263
+ * Derivation: N = chunks × 2^32 (chunk size) / 2^20 (max record size) ⇒ a
264
+ maximum length of 2^24 (16777216). Equality here is the point: the store can
265
+ never run out of chunks before it runs out of record slots, which is what
266
+ lets the table be sized statically. It is a compile-time assertion.
267
+ * meta.zr is a fixed 16 + 2^24 × 16 bytes (256 MiB). It is sparse — a store
268
+ with one record allocates 4 KiB of it — and the mapping does not prefault.
269
+
270
+ ### Chunk data (x.zr)
271
+ Densely packed record data.
272
+
273
+ ## Executor
274
+
275
+ **1. Write.** Writes are append-only; everything else is offset redirection.
276
+ * Append: compress concurrently → assign physical locations serially → flush
277
+ concurrently → commit metadata. Data is durable-ordered before the record
278
+ table, and the table before `length`, so a crash truncates rather than
279
+ corrupts. A record never straddles two chunks; one that would not fit rolls
280
+ over to a fresh chunk.
281
+ * Delete: swap the last table entry into the deleted slot and drop the length by
282
+ one. A batch is applied in descending index order, so each swap pulls from a
283
+ slot no later target refers to. The index space stays dense — which is what
284
+ the sampler needs, since it draws uniformly from `0..N` and would otherwise
285
+ keep hitting holes. The deleted record's bytes become garbage.
286
+
287
+ **2. Read.** Fill the destination memory concurrently, in place from the Python
288
+ side (executed on async threads).
289
+ * Committed records are immutable, so the read path is lock free; `length` is
290
+ published to readers through an atomic.
291
+
292
+ **3. Concurrency model.** `Io.Group.async` shards work by CPU count, and shards
293
+ beyond the limit run inline on the calling thread.
294
+ * Shards receive contiguous blocks rather than a strided subset, keeping each
295
+ worker's reads and writes sequential.
296
+ * Each shard reuses one compressor scratch (`flate.Compress` is ~230 KiB — far
297
+ too large to rebuild per record, let alone to place on a task stack).
298
+ * Decompression runs in direct mode: matches are resolved against the bytes
299
+ already written into the destination, so there is no window buffer.
300
+
301
+ **4. Garbage collection.** Deletion leaves the record's bytes stranded, so space
302
+ is reclaimed by an offline `compact` that rewrites the live records in place.
303
+ * Records are visited in *physical* order — which after swap-last deletes no
304
+ longer matches table order — and repacked densely in that same order. A record
305
+ therefore never moves to a higher address than it already had.
306
+ * Two things follow. Writing a record can never land on the bytes of a record
307
+ not yet moved, so the rewrite is safe in place with no scratch copy of the
308
+ store. And each table entry can be updated the instant its record lands, so
309
+ the store is consistent at every point: an interrupted compaction leaves some
310
+ records moved and the rest where they were, and re-running finishes the job.
311
+ * Records that are already in the right place are skipped, so a store with a
312
+ small amount of garbage near the end is cheap to compact.
313
+ * Chunk files past the new frontier are closed and deleted.
314
+ * `stats()` reports `live_bytes` against `chunk_bytes` so callers can decide when
315
+ it is worth running. Note the difference is an upper bound: a record never
316
+ straddles a chunk boundary, so up to one record's worth per chunk is slack
317
+ that compaction cannot remove.
318
+
319
+ **5. File access.**
320
+ * Metadata: a 192 MiB file created at init, accessed by mmap thereafter.
321
+ * Chunk data: 4 GiB files created at init, accessed concurrently through
322
+ `readPositionalAll`/`writePositionalAll`.
323
+
324
+ **Concurrency contract.** `gather` and `append` are safe to call concurrently
325
+ from many threads. `delete` and `compact` mutate the table in ways a lock-free
326
+ reader would observe half-applied, so they require exclusive access to the
327
+ store.
328
+
329
+ ## Distributed extension
330
+ **Not implemented yet; architecture noted in advance.**
331
+
332
+ 1. A cluster layer is added; a node becomes a shard holding several chunks.
333
+ 2. An indirection table maps a global path to a specific node, so the index path
334
+ becomes `idx → indirection[idx] = node, lidx → offset[lidx]`.
@@ -0,0 +1,13 @@
1
+ loaderx/__init__.py,sha256=g-tkCE23AVFH3E1-Wy3Gm4r6-m9GTIzy1UlN7pQQAoQ,131
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+ loaderx/_lib.py,sha256=kj4ZoHy_U6kU5KVjZQeyfPu8dmEl7diWLoldUhZZaoo,1343
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+ loaderx/_sampler.py,sha256=4ImeP_RBysfgsEmz118i0e84TJNisqoL28bKR74Tmfs,2370
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+ loaderx/_zrecord.py,sha256=PKW0IGab-s5EN1LJqIXV7RGBW_M47tDJXEBEQH1rJQQ,9334
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+ loaderx/dataloader.py,sha256=dmj-86YFxLualASdU28QPDSoidNer6PjVULSG72mPuM,3229
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+ loaderx/dataset.py,sha256=IyZXH4SLWh715vqDGwsXzyMgXNkmeJN6mOdgEZi-QgA,7442
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+ loaderx/lib/sampler.dll,sha256=KdCUyy4cQ8ReiPO_irLE1jYzMp372aHyNnBRiKU_5WU,210432
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+ loaderx/lib/zrecord.dll,sha256=t8lGwrDO8FnwEC7_rEt5yNltOzxWLbZBnIcXgb_BFFk,776704
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+ loaderx-0.5.0.dist-info/licenses/LICENSE,sha256=6TzYUKn7HWuu0ug9ZepYbKY7s1LOh43uBNWIN6i7nsI,1075
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+ loaderx-0.5.0.dist-info/METADATA,sha256=k4MF7ux4SVR_dPWhRpdZQDC5fJ4kWY-Y0pIrSQMx1Wg,15394
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+ loaderx-0.5.0.dist-info/WHEEL,sha256=84gBEa4fGSDR6CJj9KMeLIZ46AIp14gh61YGBn-qQNM,97
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+ loaderx-0.5.0.dist-info/top_level.txt,sha256=g8WeEbc7sZyfT8dsWS7dJy-Q-W1_PVlG4bNkPWNmQfM,8
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+ loaderx-0.5.0.dist-info/RECORD,,
@@ -0,0 +1,5 @@
1
+ Wheel-Version: 1.0
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+ Generator: setuptools (82.0.1)
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+ Root-Is-Purelib: true
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+ Tag: py3-none-win_arm64
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+
@@ -0,0 +1,21 @@
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+ MIT License
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+
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+ Copyright (c) 2025 EOELAB AI Research
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
10
+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.
@@ -0,0 +1 @@
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+ loaderx