lisaanalysistools 1.1.20__cp39-cp39-macosx_15_0_arm64.whl

lisaanalysistools/git_version.py

@@ -0,0 +1,7 @@
+"""Metadata deduced from git at build time."""
+
+id: str
+short_id: str
+
+id = ""
+short_id = ""

lisaanalysistools-1.1.20.dist-info/METADATA

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+Metadata-Version: 2.2
+Name: lisaanalysistools
+Version: 1.1.20
+Summary: A package for LISA Data Analysis
+Author-Email: Michael Katz <mikekatz04@gmail.com>
+Classifier: Environment :: GPU :: NVIDIA CUDA
+Classifier: License :: OSI Approved :: Apache Software License
+Classifier: Natural Language :: English
+Classifier: Programming Language :: C++
+Classifier: Programming Language :: Cython
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Requires-Python: >=3.9
+Requires-Dist: exceptiongroup; python_version < "3.11"
+Requires-Dist: h5py<3.15
+Requires-Dist: matplotlib
+Requires-Dist: gpubackendtools
+Requires-Dist: jsonschema
+Requires-Dist: lisaconstants
+Requires-Dist: multispline
+Requires-Dist: numba
+Requires-Dist: numpy
+Requires-Dist: nvidia-ml-py
+Requires-Dist: platformdirs
+Requires-Dist: pydantic
+Requires-Dist: pyyaml
+Requires-Dist: requests
+Requires-Dist: rich
+Requires-Dist: scipy
+Requires-Dist: tqdm
+Requires-Dist: wrapt
+Provides-Extra: doc
+Requires-Dist: ipykernel; extra == "doc"
+Requires-Dist: ipython; extra == "doc"
+Requires-Dist: ipywidgets; extra == "doc"
+Requires-Dist: myst-parser; extra == "doc"
+Requires-Dist: nbsphinx; extra == "doc"
+Requires-Dist: pypandoc; extra == "doc"
+Requires-Dist: sphinx; extra == "doc"
+Requires-Dist: sphinx-rtd-theme; extra == "doc"
+Requires-Dist: sphinx-tippy; extra == "doc"
+Requires-Dist: corner; extra == "doc"
+Provides-Extra: sampling
+Requires-Dist: eryn; extra == "sampling"
+Requires-Dist: fastlisaresponse; extra == "sampling"
+Requires-Dist: corner; extra == "sampling"
+Requires-Dist: chainconsumer; extra == "sampling"
+Provides-Extra: testing
+Requires-Dist: matplotlib; extra == "testing"
+Requires-Dist: eryn; extra == "testing"
+Requires-Dist: gbgpu; extra == "testing"
+Requires-Dist: corner; extra == "testing"
+Description-Content-Type: text/markdown
+
+# LISA Analysis Tools
+
+[![Doc badge](https://img.shields.io/badge/Docs-master-brightgreen)](https://mikekatz04.github.io/LISAanalysistools)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.17138723.svg)](https://doi.org/10.5281/zenodo.17138723)
+
+LISA Analysis Tools is a package for performing LISA Data Analysis tasks, including building the LISA Global Fit.  
+
+To install the latest version of `lisaanalysistools` using `pip`, simply run:
+
+```sh
+# For CPU-only version
+pip install lisaanalysistools
+
+# For GPU-enabled versions with CUDA 11.Y.Z
+pip install lisaanalysistools-cuda11x
+
+# For GPU-enabled versions with CUDA 12.Y.Z
+pip install lisaanalysistools-cuda12x
+```
+
+To know your CUDA version, run the tool `nvidia-smi` in a terminal a check the CUDA version reported in the table header:
+
+```sh
+$ nvidia-smi
++-----------------------------------------------------------------------------------------+
+| NVIDIA-SMI 550.54.15              Driver Version: 550.54.15      CUDA Version: 12.4     |
+|-----------------------------------------+------------------------+----------------------+
+...
+```
+
+Now, in a python file or notebook:
+
+```py3
+import lisatools
+```
+
+You may check the currently available backends:
+
+```py3
+>>> for backend in ["cpu", "cuda11x", "cuda12x", "cuda", "gpu"]:
+...     print(f" - Backend '{backend}': {"available" if lisatools.has_backend(backend) else "unavailable"}")
+ - Backend 'cpu': available
+ - Backend 'cuda11x': unavailable
+ - Backend 'cuda12x': unavailable
+ - Backend 'cuda': unavailable
+ - Backend 'gpu': unavailable
+```
+
+Note that the `cuda` backend is an alias for either `cuda11x` or `cuda12x`. If any is available, then the `cuda` backend is available.
+Similarly, the `gpu` backend is (for now) an alias for `cuda`.
+
+If you expected a backend to be available but it is not, run the following command to obtain an error
+message which can guide you to fix this issue:
+
+```py3
+>>> import lisatools
+>>> lisatools.get_backend("cuda12x")
+ModuleNotFoundError: No module named 'lisatools_backend_cuda12x'
+
+The above exception was the direct cause of the following exception:
+...
+
+lisatools.cutils.BackendNotInstalled: The 'cuda12x' backend is not installed.
+
+The above exception was the direct cause of the following exception:
+...
+
+lisatools.cutils.MissingDependencies: LISAanalysistools CUDA plugin is missing.
+    If you are using lisatools in an environment managed using pip, run:
+        $ pip install lisaanalysistools-cuda12x
+
+The above exception was the direct cause of the following exception:
+...
+
+lisatools.cutils.BackendAccessException: Backend 'cuda12x' is unavailable. See previous error messages.
+```
+
+Once LISA Analysis Tools is working and the expected backends are selected, check out the [examples notebooks](https://github.com/mikekatz04/LISAanalysistools/tree/master/examples/)
+on how to start with this software.
+
+## Installing from sources
+
+### Prerequisites
+
+To install this software from source, you will need:
+
+- A C++ compiler (g++, clang++, ...)
+- A Python version supported by [scikit-build-core](https://github.com/scikit-build/scikit-build-core) (>=3.7 as of Jan. 2025)
+
+If you want to enable GPU support in LISA Analysis Tools, you will also need the NVIDIA CUDA Compiler `nvcc` in your path as well as
+the [CUDA toolkit](https://docs.nvidia.com/cuda/cuda-installation-guide-linux/index.html) (with, in particular, the
+libraries `CUDA Runtime Library`, `cuBLAS` and `cuSPARSE`).
+
+
+### Installation instructions using conda
+
+We recommend to install LISA Analysis Tools using conda in order to have the compilers all within an environment.
+First clone the repo
+
+```
+git clone https://github.com/mikekatz04/LISAanalysistools.git
+cd LISAanalysistools
+```
+
+Now create an environment (these instructions work for all platforms but some
+adjustements can be needed, refer to the
+[detailed installation documentation](https://mikekatz04.github.io/LISAanalysistools) for more information):
+
+```
+conda create -n lisatools_env -y -c conda-forge --override-channels |
+    cxx-compiler pkgconfig conda-forge/label/lapack_rc::liblapacke
+```
+
+activate the environment
+
+```
+conda activate lisatools_env
+```
+
+Then we can install locally for development:
+```
+pip install -e '.[dev, testing]'
+```
+
+### Installation instructions using conda on GPUs and linux
+Below is a quick set of instructions to install the LISA Analysis Tools package on GPUs and linux.
+
+```sh
+conda create -n lisatools_env -c conda-forge lisaanalysistools-cuda12x python=3.12
+conda activate lisatools_env
+```
+
+Test the installation device by running python
+```python
+import lisatools
+lisatools.get_backend("cuda12x")
+```
+
+### Running the installation
+
+To start the from-source installation, ensure the pre-requisite are met, clone
+the repository, and then simply run a `pip install` command:
+
+```sh
+# Clone the repository
+git clone https://github.com/mikekatz04/LISAanalysistools.git
+cd LISAanalysistools
+
+# Run the install
+pip install .
+```
+
+If the installation does not work, first check the [detailed installation
+documentation](https://mikekatz04.github.io/LISAanalysistools). If
+it still does not work, please open an issue on the
+[GitHub repository](https://github.com/mikekatz04/LISAanalysistools/issues)
+or contact the developers through other means.
+
+
+
+### Running the Tests
+
+The tests require a few dependencies which are not installed by default. To install them, add the `[testing]` label to LISA Analysis Tools package
+name when installing it. E.g:
+
+```sh
+# For CPU-only version with testing enabled
+pip install lisaanalysistools[testing]
+
+# For GPU version with CUDA 12.Y and testing enabled
+pip install lisaanalysistools-cuda12x[testing]
+
+# For from-source install with testing enabled
+git clone https://github.com/mikekatz04/LISAanalysistools.git
+cd LISAanalysistools
+pip install '.[testing]'
+```
+
+To run the tests, open a terminal in a directory containing the sources of LISA Analysis Tools and then run the `unittest` module in `discover` mode:
+
+```sh
+$ git clone https://github.com/mikekatz04/LISAanalysistools.git
+$ cd LISAanalysistools
+$ python -m lisatools.tests  # or "python -m unittest discover"
+...
+----------------------------------------------------------------------
+Ran 20 tests in 71.514s
+OK
+```
+
+## Contributing
+
+Please read [CONTRIBUTING.md](CONTRIBUTING.md) for details on our code of conduct, and the process for submitting pull requests to us.
+
+If you want to develop LISA Analysis Tools and produce documentation, install `lisatools` from source with the `[dev]` label and in `editable` mode:
+
+```
+$ git clone https://github.com/mikekatz04/LISAanalysistools.git
+$ cd LISAanalysistools
+pip install -e '.[dev, testing]'
+```
+
+This will install necessary packages for building the documentation (`sphinx`, `pypandoc`, `sphinx_rtd_theme`, `nbsphinx`) and to run the tests.
+
+The documentation source files are in `docs/source`. To compile the documentation locally, change to the `docs` directory and run `make html`.
+
+## Versioning
+
+We use [SemVer](http://semver.org/) for versioning. For the versions available, see the [tags on this repository](https://github.com/mikekatz04/LISAanalysistools/tags).
+
+## Contributors
+
+A (non-exhaustive) list of contributors to the LISA Analysis Tools code can be found in [CONTRIBUTORS.md](CONTRIBUTORS.md).
+
+## License
+
+This project is licensed under the Apache License - see the [LICENSE](LICENSE) file for details.
+
+## Citation
+
+Please make sure to cite LISA Analysis Tools papers and the LISA Analysis Tools software on [Zenodo](https://zenodo.org/records/17138723).
+We provide a set of prepared references in [PAPERS.bib](PAPERS.bib). There are other papers that require citation based on the classes used. For most classes this applies to, you can find these by checking the `citation` attribute for that class.  All references are detailed in the [CITATION.cff](CITATION.cff) file.
+

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lisaanalysistools-1.1.20.dist-info/licenses/LICENSE

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lisatools/__init__.py

@@ -0,0 +1,90 @@
+"""LISA Analysis Tools."""
+
+# ruff: noqa: E402
+try:
+    from lisatools._version import (  # pylint: disable=E0401,E0611
+        __version__,
+        __version_tuple__,
+    )
+
+except ModuleNotFoundError:
+    from importlib.metadata import PackageNotFoundError, version  # pragma: no cover
+
+    try:
+        __version__ = version(__name__)
+        __version_tuple__ = tuple(__version__.split("."))
+    except PackageNotFoundError:  # pragma: no cover
+        __version__ = "unknown"
+        __version_tuple__ = (0, 0, 0, "unknown")
+    finally:
+        del version, PackageNotFoundError
+
+_is_editable: bool
+try:
+    from . import _editable
+
+    _is_editable = True
+    del _editable
+except (ModuleNotFoundError, ImportError):
+    _is_editable = False
+
+from . import cutils, utils
+
+from gpubackendtools import get_backend, has_backend, get_first_backend
+from gpubackendtools import Globals
+from .cutils import LISAToolsCpuBackend, LISAToolsCuda11xBackend, LISAToolsCuda12xBackend
+
+
+add_backends = {
+    "lisatools_cpu": LISAToolsCpuBackend,
+    "lisatools_cuda11x": LISAToolsCuda11xBackend,
+    "lisatools_cuda12x": LISAToolsCuda12xBackend,
+}
+
+Globals().backends_manager.add_backends(add_backends)
+
+Globals().backends_manager.add_backends(add_backends)
+
+
+from gpubackendtools import get_backend as _get_backend
+from gpubackendtools import has_backend as _has_backend
+from gpubackendtools import get_first_backend as _get_first_backend
+from gpubackendtools.gpubackendtools import Backend
+
+
+def get_backend(backend: str) -> Backend:
+    __doc__ = _get_backend.__doc__
+    if "lisatools_" not in backend:
+        return _get_backend("lisatools_" + backend)
+    else:
+        return _get_backend(backend)
+
+
+def has_backend(backend: str) -> Backend:
+    __doc__ = _has_backend.__doc__
+    if "lisatools_" not in backend:
+        return _has_backend("lisatools_" + backend)
+    else:
+        return _has_backend(backend)
+
+        
+def get_first_backend(backend: str) -> Backend:
+    __doc__ = _get_first_backend.__doc__
+    if "lisatools_" not in backend:
+        return _get_first_backend("lisatools_" + backend)
+    else:
+        return _get_first_backend(backend)
+
+__all__ = [
+    "__version__",
+    "__version_tuple__",
+    "_is_editable",
+    "get_logger",
+    "get_config",
+    "get_config_setter",
+    "get_backend",
+    "get_file_manager",
+    "has_backend",
+    "get_backend",
+    "get_first_backend",
+]

lisatools/_version.py

@@ -0,0 +1,34 @@
+# file generated by setuptools-scm
+# don't change, don't track in version control
+
+__all__ = [
+    "__version__",
+    "__version_tuple__",
+    "version",
+    "version_tuple",
+    "__commit_id__",
+    "commit_id",
+]
+
+TYPE_CHECKING = False
+if TYPE_CHECKING:
+    from typing import Tuple
+    from typing import Union
+
+    VERSION_TUPLE = Tuple[Union[int, str], ...]
+    COMMIT_ID = Union[str, None]
+else:
+    VERSION_TUPLE = object
+    COMMIT_ID = object
+
+version: str
+__version__: str
+__version_tuple__: VERSION_TUPLE
+version_tuple: VERSION_TUPLE
+commit_id: COMMIT_ID
+__commit_id__: COMMIT_ID
+
+__version__ = version = '1.1.20'
+__version_tuple__ = version_tuple = (1, 1, 20)
+
+__commit_id__ = commit_id = None