linkml 1.9.5rc1__py3-none-any.whl → 1.9.5rc2__py3-none-any.whl

linkml/utils/schema_builder.py

@@ -193,6 +193,8 @@ class SchemaBuilder:
                 if isinstance(pv, str):
                     pv = PermissibleValue(text=pv)
                     enum_def.permissible_values[pv.text] = pv
+                else:
+                    enum_def.permissible_values[pv.text] = pv
         return self
 
     def add_prefix(self, prefix: str, url: str, replace_if_present=False) -> "SchemaBuilder":

{linkml-1.9.5rc1.dist-info → linkml-1.9.5rc2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: linkml
-Version: 1.9.5rc1
+Version: 1.9.5rc2
 Summary: Linked Open Data Modeling Language
 Author: Deepak Unni
 Author-email: Chris Mungall <cjmungall@lbl.gov>, Sierra Moxon <smoxon@lbl.gov>, Harold Solbrig <solbrig@jhu.edu>, Sujay Patil <spatil@lbl.gov>, Harshad Hegde <hhegde@lbl.gov>, Mark Andrew Miller <MAM@lbl.gov>, Gaurav Vaidya <gaurav@renci.org>, Kevin Schaper <kevin@tislab.org>

{linkml-1.9.5rc1.dist-info → linkml-1.9.5rc2.dist-info}/RECORD

@@ -3,7 +3,9 @@ linkml/_version.py,sha256=udxv6OEqcE89DTVMYPtetXYg8IA8Sgc6yW26-6f8C3M,310
 linkml/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/cli/__main__.py,sha256=oPa7Fl2DQP40UivpIWNRr1CgwT2SQM0rhE478155zBY,80
 linkml/cli/logging.py,sha256=MdVbox1qr6kDUHUCWAmFhV-D6ebs_nn8vVwB8KDQfew,742
-linkml/cli/main.py,sha256=mFbLc6s5Z5CdXL6Gnsvr8F3rPehG4sqS5AXLwJezDTs,5806
+linkml/cli/main.py,sha256=IyLP0yZV4J51rhmw9wdX_4XNKehYlk3L3sBvwv02pXk,5804
+linkml/converter/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+linkml/converter/cli.py,sha256=0xcUXdVPUXZvVuHivUibfVMoCd24oPsjYU1M17H173U,7121
 linkml/generators/PythonGenNotes.md,sha256=SOzZhIBP_O8g46uBTnYy6A7nuP--hh-f_QXEERZRxdk,50822
 linkml/generators/README.md,sha256=fnkmT98lspv8a8FyBLOQsHoBKQaapFGb8H_Stg56dco,4436
 linkml/generators/__init__.py,sha256=DGSaQ3JOAjI1VwjZQXmU6IPZdAfoBC2ma-N4aRgvGKY,1742
@@ -25,7 +27,7 @@ linkml/generators/markdowngen.py,sha256=_4RfmuMNR-m90QdmbG26iFQC_ZSaUBDUWPX_hsqZ
 linkml/generators/mermaidclassdiagramgen.py,sha256=Zr926xS1K2MqD3K3x9zb9w_ot1T0wyj9U_1ZHZTN2n4,5984
 linkml/generators/namespacegen.py,sha256=C4p9LSwsnDqf6sv-wG5l0VQniWFJ1HA1hRXJBDOg3pM,6467
 linkml/generators/oocodegen.py,sha256=dgcHhpO81qC2Tx-kG_VhZVaoRjOwrcrulIXV8gEU1bY,7808
-linkml/generators/owlgen.py,sha256=cd7kvspyldP21PxJzLGStWkcqknJ9X-mQk2mfOQFC9Q,58203
+linkml/generators/owlgen.py,sha256=-eCqd0QF_3k0sT6Qjl-uSVGpEGOYtip8wQEfZeovUNo,58581
 linkml/generators/plantumlgen.py,sha256=KUmx25wCcUJrnaOqXJ3EyCx12f9YK2wlrWGOFifKcJc,16053
 linkml/generators/prefixmapgen.py,sha256=X-3K1q5WcSS8TL7rHBOL4qBGBk2Szr7l1_UzRQVvFGA,4246
 linkml/generators/projectgen.py,sha256=qvXIWDfrPYKZT38JCyItQjW1AZofJ4ZyPZeUkscZxOo,9586
@@ -43,7 +45,7 @@ linkml/generators/summarygen.py,sha256=abNd39Z-Kn3FX2fjXLeCqvXvFunpqM7UFPimtiCB2
 linkml/generators/terminusdbgen.py,sha256=Zizvh_GLBO9LK_X11gUvB_Ip1ttkkfiD4OZBtxjgAG4,4669
 linkml/generators/typescriptgen.py,sha256=wRnZpZ3LEepJRFYHVNP06PX5rPFzIDPglDRxi0Z6Zro,8870
 linkml/generators/yamlgen.py,sha256=PWexYoR3wHRoAUk6zK67fRYjBF6sAmX_iGlOAT0PJq0,1623
-linkml/generators/yarrrmlgen.py,sha256=-wi-jozAkGk1OsrsF-wDy23dYwV7W_6K7J-6HO9c7Ds,5257
+linkml/generators/yarrrmlgen.py,sha256=jEQo6k_w_S3HeYoMm0C5lDDqrXaB_ZMADSJ1i35KCww,5865
 linkml/generators/yumlgen.py,sha256=ZK42N3hJPvvOdztOWCwysARrGVWjg5V4Qx2XcS2Vvgc,13277
 linkml/generators/common/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/generators/common/build.py,sha256=3SxiwOp9bzrt9XVQqgegstGEuiibnG0-4gdlIAiRBtE,2394
@@ -104,32 +106,35 @@ linkml/generators/pydanticgen/templates/validator.py.jinja,sha256=oz8XWh4Mt7DRHH
 linkml/generators/python/__init__.py,sha256=NS9fPEuAo0punDplD91F9mcViXMJJv04Q5NkFcKPNvY,40
 linkml/generators/python/python_ifabsent_processor.py,sha256=AqFabuyHCBpPTLO2-XO1uWNh3YcIpc-Na_649o_VmLc,3834
 linkml/generators/rustgen/__init__.py,sha256=2ihCJiuI3AxYo55Sqt4r2wVxn-3Kp6RNgQVQ-SNvaQU,115
-linkml/generators/rustgen/build.py,sha256=-TfjBYFdJWBSCGMMmQKQ9RvC7_rJoTWXwc7NIMdxhaA,1777
-linkml/generators/rustgen/cli.py,sha256=PcMFzi110RZreERjiW2db89aXsk1hMZ6gzdV7eZdrpY,1898
-linkml/generators/rustgen/rustgen.py,sha256=Wbgqhdhs-jlcp0C5y3NlJamC5aCBdmPQYdOxdEUBnpA,39682
-linkml/generators/rustgen/template.py,sha256=6rJh84jmWxLGThR9V3w9gEq0n7PTFZKkWnKY3nlkwTw,27995
-linkml/generators/rustgen/templates/Cargo.toml.jinja,sha256=ogwEnMlx6Rl81DKiyt9AF67y7aBjXpy4dxCrLi8Fwzw,1057
-linkml/generators/rustgen/templates/anything.rs.jinja,sha256=2RKNeqCawcMzSPgrOSx2yB8F7R9OqzXH3VDOhA2BqSU,5095
-linkml/generators/rustgen/templates/as_key_value.rs.jinja,sha256=_vm6HIFssQCSIbI391Z5eLtzLdbkCRqgTkI-8oH2rqI,2161
+linkml/generators/rustgen/build.py,sha256=vBMcCsDjDM56BzSHFGy0S0Ugv5PusSVBfIWa3chTlbI,1879
+linkml/generators/rustgen/cli.py,sha256=GEQmwxx_yZNcVRA0eUao7Qxgdp8o8NU5GhHq59SQhjQ,2349
+linkml/generators/rustgen/rustgen.py,sha256=OyURn_vvk7OXkG5ivNSBzpMiKJKTIZgGoVdI5bwOEgo,45751
+linkml/generators/rustgen/template.py,sha256=D412jQwfLQy79Z-_jSUUBh6_erTNh95eW4-v7-ed25E,29482
+linkml/generators/rustgen/templates/Cargo.toml.jinja,sha256=CqHM6DkVLpk9YUD4FJmt4LJLwkEjzGsyUTd1TIAkFqw,1061
+linkml/generators/rustgen/templates/anything.rs.jinja,sha256=WWAO9QkS0kKWkPcW5M6-58X8lyuDpuMpsz_1TEid5ss,5246
+linkml/generators/rustgen/templates/as_key_value.rs.jinja,sha256=dOAWwUy4Ce6jZ-6Uj3cwCGo1-hBdSBsU1eEhUoIHfd8,3181
 linkml/generators/rustgen/templates/class_module.rs.jinja,sha256=HKRA6L74rGLynfvxdLhzuVQK-5s7tWlcpUmUr1NSw5Q,153
-linkml/generators/rustgen/templates/enum.rs.jinja,sha256=7xmTDezReZEflgBJiY_nxJwSfD5pJfJUPtopAvJbEa4,1807
-linkml/generators/rustgen/templates/file.rs.jinja,sha256=8fuoqOZM4joBoOHdk1FvIkTbhh4v6cPRLBZVzRZypQI,1007
+linkml/generators/rustgen/templates/enum.rs.jinja,sha256=YiBvQvjkIKGNv-mtAMCENf7gdM78-d2qOV5uBJXA7Rs,2395
+linkml/generators/rustgen/templates/file.rs.jinja,sha256=UCrDJuZu3q8IX8TW7qhBVmmillJ04iFdQ5XzCSjVGI0,1297
 linkml/generators/rustgen/templates/import.rs.jinja,sha256=fYEG5YYVszjBVp6Gs-pJdgcAoaiHghUQxUg2BA4yyx8,397
 linkml/generators/rustgen/templates/imports.rs.jinja,sha256=2u0cVLBrluxldVnEUJ1ipMJWQGrWidmDP6KbJVyQxi8,158
+linkml/generators/rustgen/templates/lib_shim.rs.jinja,sha256=zY7Cje4tOs7hEPuur5U5BMo8Jc2z4BPDYG2JgFpv__k,1681
 linkml/generators/rustgen/templates/poly.rs.jinja,sha256=CXFmKfNwZMSI2cYXy14vKzv80QGtO86vjTdTf7NZi0U,123
 linkml/generators/rustgen/templates/poly_containers.rs.jinja,sha256=xDZevupLBm0bLjltXc1VzE1tVyAligeOtRZmN6-_puw,12347
 linkml/generators/rustgen/templates/poly_trait.rs.jinja,sha256=Smje9PjD2LZsZ27XVbCcHJeWDU5e1PyNg-zJOAVhf9U,308
 linkml/generators/rustgen/templates/poly_trait_impl.rs.jinja,sha256=u1_DSCB-7vX05_xL34gmIQHKelnexGCQZp_lAXhShyw,95
 linkml/generators/rustgen/templates/poly_trait_impl_orsubtype.rs.jinja,sha256=4GTCjV_1MlUG5O-gN_SD-4UY3RaLvthIYW24sLhXGBs,93
 linkml/generators/rustgen/templates/poly_trait_property.rs.jinja,sha256=tLge1ghiR6lHPUsHDhXIQHPshK7hGkJtXm8hXSiL4-g,428
-linkml/generators/rustgen/templates/poly_trait_property_impl.rs.jinja,sha256=DTloJkCwXgqmHrat6XRLO9iY6KFX-yOwVMTp_TQNcEY,5112
+linkml/generators/rustgen/templates/poly_trait_property_impl.rs.jinja,sha256=IwJB6vy0ShZgyNvdMo4WUcPmns7qh9gKbDbHfB6KqmU,5196
 linkml/generators/rustgen/templates/poly_trait_property_match.rs.jinja,sha256=qEeKXt1AcEoIpDrbaNkOgyfGs1zgxGtn8SyHo6mgCWA,478
-linkml/generators/rustgen/templates/property.rs.jinja,sha256=SatpHKIyEOOvAWZOpQ3IRWsNfuBrxc7SPkrVzLIVulI,1014
+linkml/generators/rustgen/templates/property.rs.jinja,sha256=7GRXNwEPi1jLttOI27jldcK3H3-tPUVLqvpFr4O_ST4,1350
 linkml/generators/rustgen/templates/pyproject.toml.jinja,sha256=4ViLLeTcLt9wzqe8i80HEypHiU5lGwfzU6IHqzzc1cw,184
-linkml/generators/rustgen/templates/serde_utils.rs.jinja,sha256=KfeDiNZOFfkR2bVlDDmXvR-n58dGazitjBTb5tgVQyA,9441
-linkml/generators/rustgen/templates/slot_range_as_union.rs.jinja,sha256=qFoAWJLUoZbnm9-weg5BJn5Z3iylEK6ELolhjPy5qUQ,2112
-linkml/generators/rustgen/templates/struct.rs.jinja,sha256=AkBF34s054XH_VqUQe61YwdFt_coWrQTECNapoVySK4,2215
-linkml/generators/rustgen/templates/struct_or_subtype_enum.rs.jinja,sha256=333LZUcpjHPsA2aR3Ts1pNnlncMH0ubmA5HlajWFW20,3427
+linkml/generators/rustgen/templates/serde_utils.rs.jinja,sha256=PDx0VLooA0sjKGBf_XNxHmiEobGdQMmgW7ew6-Gf5Po,13884
+linkml/generators/rustgen/templates/slot_range_as_union.rs.jinja,sha256=qYeOvojeoPUkUPiRhnX-nurwBfjkIMIeHkIUzEYHu3E,2235
+linkml/generators/rustgen/templates/struct.rs.jinja,sha256=45vGkG8R5OgUVyUWnF40D0sym0FjP46XIDnyzpUItqc,2377
+linkml/generators/rustgen/templates/struct_or_subtype_enum.rs.jinja,sha256=Jpix-C9Hcycg8gyuF_ghHyZAQBH_yKJjpB6P74Yh1mM,3559
+linkml/generators/rustgen/templates/stub_gen.rs.jinja,sha256=3xiRepFCr1vrDUne_4if3Tzil9B4l5lV0x9RRRZeOkU,2093
+linkml/generators/rustgen/templates/stub_utils.rs.jinja,sha256=_FAVspupgJwpdbiSLjvZG0MY6PK5pf-1HibUrTiEf4w,2818
 linkml/generators/rustgen/templates/typealias.rs.jinja,sha256=HQtLzULc-7YaqfVfecYUJBqX7k3PCMEyU9Q8h5-a5vc,413
 linkml/generators/shacl/__init__.py,sha256=KgMOyESGTdKk2Vhx9uuUYgEJPuJQ-iT1vDQVIMoiXCM,58
 linkml/generators/shacl/shacl_data_type.py,sha256=gX3Y2KyTVPwMyef0cJMTEpU9h0oH-H0ThVDORdNW170,1828
@@ -162,7 +167,6 @@ linkml/transformers/relmodel_transformer.py,sha256=g3WhT3FyNlxP36lFaJzSh9v9eZweN
 linkml/transformers/rollup_transformer.py,sha256=YP3RyYa0TzfkTrPZ4LnTIedmQWCnneFk3wAT77E1Amc,4549
 linkml/transformers/schema_renamer.py,sha256=DvXsAsxAb8p8RAxR_c74zbn_VRFN1JHCLHcjH9z7qr0,5263
 linkml/utils/__init__.py,sha256=Pkyv-Gfb8QoJdInRdJuuUz1Igfe0sT9t8Gv3V_fyTXc,92
-linkml/utils/converter.py,sha256=0xcUXdVPUXZvVuHivUibfVMoCd24oPsjYU1M17H173U,7121
 linkml/utils/datautils.py,sha256=QlbzwXykh5Fphfe5KxPo6_ekXfniLbHiEGJtLWjUrvY,3742
 linkml/utils/datavalidator.py,sha256=kBdWaVi8IZT1bOwEJgJYx-wZAb_PTBObB9nHpYORfKA,472
 linkml/utils/deprecation.py,sha256=fFd_rUmTJInovuhuHVZf_44fQRve6FyJ43DY2-0XLmA,9781
@@ -173,7 +177,7 @@ linkml/utils/helpers.py,sha256=MomYM4Oof-c1SgyMpjoG0Aob-eaVeF8kXvuzdJiKo_g,3351
 linkml/utils/logictools.py,sha256=dvwuX6DU0PZyxhVr9kphyQFttqZNSbbIRZ7vtTh2gU8,23649
 linkml/utils/mergeutils.py,sha256=uXHuyc13MhATMPaDToSsJlMTXeqQ9AGVEj7uOlcGGLE,10505
 linkml/utils/rawloader.py,sha256=nUB8Gfn8yEVwyo6bx0TtB2mBGkilC-fybi0xvQ73Gks,4417
-linkml/utils/schema_builder.py,sha256=WfTdRnuLUhNj_y_D1uaMCaGXgafUuJkvMyPlW8T11r8,9971
+linkml/utils/schema_builder.py,sha256=dowMWyuo00yjfh0BHCmPiEw12o0tEmj3lXiKVp_VpBU,10055
 linkml/utils/schema_fixer.py,sha256=j9MoPlAd6j8fLC1Mnj_MSojnPlfR_Ml87jQkknjPYjE,16754
 linkml/utils/schemaloader.py,sha256=DlsKEOvo_uIaQL_Rlz4yCPCc_uStOlFYUVcQbqF4Vik,50590
 linkml/utils/schemasynopsis.py,sha256=0cJZHTIrXTUS6EPvK2YKo7IuvbRQCkWKeRBsyz_zjSo,18441
@@ -205,8 +209,8 @@ linkml/workspaces/example_runner.py,sha256=EjaAn6vaAKZnFcW5hRopkYBguiaR05aqKbuaM
 linkml/workspaces/datamodel/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/workspaces/datamodel/workspaces.py,sha256=YIGzErECZuMER03h3DcuY3psMb0lDF1Pia_8hreKoTE,14667
 linkml/workspaces/datamodel/workspaces.yaml,sha256=LU0lMJ4W6Tk66r5ECD7OkaVm9kCRfu93yoik1b4gkzQ,4228
-linkml-1.9.5rc1.dist-info/METADATA,sha256=sUm26BPUFhoVUtTnyxcISJ09MKQODVDkPxNxn_kWU8k,3344
-linkml-1.9.5rc1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-linkml-1.9.5rc1.dist-info/entry_points.txt,sha256=4JoXSZFx4-Hl3OT0b_M9aQIBr2f3untnPuBzY6TSZ_c,2381
-linkml-1.9.5rc1.dist-info/licenses/LICENSE,sha256=zsURghk1UIVsx0jaDvEy5QU2UAqecv1vtJozTV8Hwvw,536
-linkml-1.9.5rc1.dist-info/RECORD,,
+linkml-1.9.5rc2.dist-info/METADATA,sha256=DayQ7eD8J_fO-huw1xxfQFqKa4d45oSMqR2Lx8QlfKY,3344
+linkml-1.9.5rc2.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+linkml-1.9.5rc2.dist-info/entry_points.txt,sha256=pxiXrMMc21vHnzIgIUCLNJPySyKeD8rLocgPc2lFOWs,2379
+linkml-1.9.5rc2.dist-info/licenses/LICENSE,sha256=zsURghk1UIVsx0jaDvEy5QU2UAqecv1vtJozTV8Hwvw,536
+linkml-1.9.5rc2.dist-info/RECORD,,

{linkml-1.9.5rc1.dist-info → linkml-1.9.5rc2.dist-info}/entry_points.txt

@@ -40,7 +40,7 @@ gen-typescript = linkml.generators.typescriptgen:cli
 gen-yaml = linkml.generators.yamlgen:cli
 gen-yuml = linkml.generators.yumlgen:cli
 linkml = linkml.cli.main:linkml
-linkml-convert = linkml.utils.converter:cli
+linkml-convert = linkml.converter.cli:cli
 linkml-jsonschema-validate = linkml.validators.jsonschemavalidator:cli
 linkml-lint = linkml.linter.cli:main
 linkml-run-examples = linkml.workspaces.example_runner:cli