linkml 1.9.3rc2__py3-none-any.whl → 1.9.4rc1__py3-none-any.whl

linkml/generators/docgen/enum.md.jinja2

@@ -7,7 +7,7 @@ _{{ element_description_line }}_
 {% endfor %}
 {% endif %}
 
-URI: {{ gen.link(element) }}
+URI: {{ gen.uri_link(element) }}
 
 {% if element.permissible_values -%}
 ## Permissible Values

linkml/generators/docgen.py

@@ -387,8 +387,8 @@ class DocGenerator(Generator):
         :param element:
         :return:
         """
-        if isinstance(element, (EnumDefinition, SubsetDefinition)):
-            # TODO: fix schema view to handle URIs for enums and subsets
+        if isinstance(element, SubsetDefinition):
+            # Subsets have no uri attribute
             return self.name(element)
 
         if self.subfolder_type_separation:

linkml/generators/erdiagramgen.py

@@ -101,8 +101,12 @@ class ERDiagram(pydantic.BaseModel):
     relationships: list[Relationship] = []
 
     def __str__(self):
-        ents = "\n".join([str(e) for e in self.entities])
-        rels = "\n".join([str(r) for r in self.relationships])
+        # Sort entities and relationships for stable output
+        sorted_entities = sorted(self.entities, key=lambda e: e.name)
+        sorted_relationships = sorted(self.relationships, key=lambda r: str(r))
+
+        ents = "\n".join([str(e) for e in sorted_entities])
+        rels = "\n".join([str(r) for r in sorted_relationships])
         return f"erDiagram\n{ents}\n\n{rels}\n"
 
 
@@ -129,6 +133,9 @@ class ERDiagramGenerator(Generator):
     exclude_attributes: bool = False
     """If True, do not include attributes in entities"""
 
+    exclude_abstract_classes: bool = False
+    """If True, do not include abstract classes in the diagram"""
+
     genmeta: bool = False
     gen_classvars: bool = True
     gen_slots: bool = True
@@ -223,6 +230,8 @@ class ERDiagramGenerator(Generator):
     def add_upstream_class(self, class_name: ClassDefinitionName, targets: set[str], diagram: ERDiagram) -> None:
         sv = self.schemaview
         cls = sv.get_class(class_name)
+        if self.exclude_abstract_classes and cls.abstract:
+            return
         entity = Entity(name=camelcase(cls.name))
         diagram.entities.append(entity)
         for slot in sv.class_induced_slots(class_name):
@@ -239,6 +248,8 @@ class ERDiagramGenerator(Generator):
         """
         sv = self.schemaview
         cls = sv.get_class(class_name)
+        if self.exclude_abstract_classes and cls.abstract:
+            return
         entity = Entity(name=camelcase(cls.name))
         diagram.entities.append(entity)
         for slot in sv.class_induced_slots(class_name):
@@ -303,6 +314,11 @@ class ERDiagramGenerator(Generator):
     default=False,
     help="If True, do not include attributes in entities",
 )
+@click.option(
+    "--exclude-abstract-classes/--no-exclude-abstract-classes",
+    default=False,
+    help="If True, do not include abstract classes in the diagram",
+)
 @click.option(
     "--follow-references/--no-follow-references",
     default=False,

linkml/generators/projectgen.py

@@ -9,6 +9,7 @@ import click
 import yaml
 
 from linkml._version import __version__
+from linkml.cli.logging import log_level_option
 from linkml.generators.excelgen import ExcelGenerator
 from linkml.generators.graphqlgen import GraphqlGenerator
 from linkml.generators.jsonldcontextgen import ContextGenerator
@@ -22,7 +23,6 @@ from linkml.generators.pythongen import PythonGenerator
 from linkml.generators.shaclgen import ShaclGenerator
 from linkml.generators.shexgen import ShExGenerator
 from linkml.generators.sqltablegen import SQLTableGenerator
-from linkml.utils.cli_utils import log_level_option
 from linkml.utils.generator import Generator
 
 logger = logging.getLogger(__name__)

linkml/linter/config/datamodel/config.py

@@ -1,23 +1,28 @@
 # Auto generated from config.yaml by pythongen.py version: 0.0.1
-# Generation date: 2025-07-01T09:27:27
+# Generation date: 2025-07-28T09:29:10
 # Schema: linter-config
 #
 # id: https://w3id.org/linkml/linter/config
 # description: A datamodel describing the configuration file accepted by the linkml-lint command
 # license: https://creativecommons.org/publicdomain/zero/1.0/
 
+import dataclasses
+import re
 from dataclasses import dataclass
-from typing import Any, ClassVar, Optional, Union
+from datetime import date, datetime, time
+from typing import Any, ClassVar, Dict, List, Optional, Union
 
-from jsonasobj2 import as_dict
-from linkml_runtime.linkml_model.meta import EnumDefinition, PermissibleValue
+from jsonasobj2 import JsonObj, as_dict
+from linkml_runtime.linkml_model.meta import EnumDefinition, PermissibleValue, PvFormulaOptions
 from linkml_runtime.utils.curienamespace import CurieNamespace
 from linkml_runtime.utils.enumerations import EnumDefinitionImpl
-from linkml_runtime.utils.metamodelcore import empty_list
+from linkml_runtime.utils.formatutils import camelcase, sfx, underscore
+from linkml_runtime.utils.metamodelcore import bnode, empty_dict, empty_list
 from linkml_runtime.utils.slot import Slot
-from linkml_runtime.utils.yamlutils import YAMLRoot
-from rdflib import URIRef
+from linkml_runtime.utils.yamlutils import YAMLRoot, extended_float, extended_int, extended_str
+from rdflib import Namespace, URIRef
 
+from linkml_runtime.linkml_model.types import Boolean, String
 from linkml_runtime.utils.metamodelcore import Bool
 
 metamodel_version = "1.7.0"
@@ -257,6 +262,7 @@ class StandardNamingConfig(RuleConfig):
     exclude_type: Optional[
         Union[Union[str, "MetamodelElementTypeEnum"], list[Union[str, "MetamodelElementTypeEnum"]]]
     ] = empty_list()
+    exclude: Optional[Union[str, list[str]]] = empty_list()
     class_pattern: Optional[str] = None
     slot_pattern: Optional[str] = None
 
@@ -270,6 +276,10 @@ class StandardNamingConfig(RuleConfig):
             v if isinstance(v, MetamodelElementTypeEnum) else MetamodelElementTypeEnum(v) for v in self.exclude_type
         ]
 
+        if not isinstance(self.exclude, list):
+            self.exclude = [self.exclude] if self.exclude is not None else []
+        self.exclude = [v if isinstance(v, str) else str(v) for v in self.exclude]
+
         if self.class_pattern is not None and not isinstance(self.class_pattern, str):
             self.class_pattern = str(self.class_pattern)
 
@@ -583,6 +593,15 @@ slots.standardNamingConfig__exclude_type = Slot(
     range=Optional[Union[Union[str, "MetamodelElementTypeEnum"], list[Union[str, "MetamodelElementTypeEnum"]]]],
 )
 
+slots.standardNamingConfig__exclude = Slot(
+    uri=LINTCFG.exclude,
+    name="standardNamingConfig__exclude",
+    curie=LINTCFG.curie("exclude"),
+    model_uri=LINTCFG.standardNamingConfig__exclude,
+    domain=None,
+    range=Optional[Union[str, list[str]]],
+)
+
 slots.standardNamingConfig__class_pattern = Slot(
     uri=LINTCFG.class_pattern,
     name="standardNamingConfig__class_pattern",

linkml/linter/config/datamodel/config.yaml

@@ -180,6 +180,13 @@ classes:
         description: >-
           Default: []
           Elements of all types (ClassDefinition, SlotDefinition, EnumDefinition, PermissibleValue, etc.) except the types specified in this list will be checked
+      exclude:
+        range: string
+        multivalued: true
+        description: >-
+          Default: []
+          Named schema elements in this list will be skipped by the checker.
+          For example: ["legacy_class", "badSlot", "bad_enum", "LEGACY_PERMISSIBLE_VALUE"]
       class_pattern:
         range: string
         required: false

linkml/linter/rules.py

@@ -6,6 +6,7 @@ import re
 from abc import ABC, abstractmethod
 from collections.abc import Callable, Iterable
 from functools import cache
+from itertools import chain
 
 from linkml_runtime.linkml_model import (
     ClassDefinition,
@@ -326,43 +327,58 @@ class StandardNamingRule(LinterRule):
 
     def check(self, schema_view: SchemaView, fix: bool = False) -> Iterable[LinterProblem]:
         excluded_types = [t.text if hasattr(t, "text") else str(t) for t in getattr(self.config, "exclude_type", [])]
-        class_pattern = (
-            self.PATTERNS["uppercamel"]
-            if not self.config.class_pattern
-            else self.PATTERNS.get(self.config.class_pattern, re.compile(self.config.class_pattern))
+        excluded_names = set(getattr(self.config, "exclude", []))
+
+        # element naming patterns indexed by element type
+        pattern = {
+            "class": (
+                self.PATTERNS["uppercamel"]
+                if not self.config.class_pattern
+                else self.PATTERNS.get(self.config.class_pattern, re.compile(self.config.class_pattern))
+            ),
+            "slot": (
+                self.PATTERNS["snake"]
+                if not self.config.slot_pattern
+                else self.PATTERNS.get(self.config.slot_pattern, re.compile(self.config.slot_pattern))
+            ),
+            "enum": self.PATTERNS["uppercamel"],
+            "permissible_value": self.PATTERNS["uppersnake"]
+            if self.config.permissible_values_upper_case
+            else self.PATTERNS["snake"],
+        }
+
+        # explicit method mapping for better readability and maintainability
+        element_extractors = {
+            "class": schema_view.all_classes,
+            "slot": schema_view.all_slots,
+            "enum": schema_view.all_enums,
+        }
+
+        # cache the results to avoid repeated method calls
+        cached_elements = {el_type: element_extractors[el_type]() for el_type in element_extractors}
+
+        # generate LinterProblems for classes, slots, and enums incrementally
+        problems = (
+            LinterProblem(f"{el_type.capitalize()} has name '{el_name}'")
+            for el_type, elements in cached_elements.items()
+            for el_name in elements
+            if f"{el_type}_definition" not in excluded_types
+            and el_name not in excluded_names
+            and pattern[el_type].fullmatch(el_name) is None
         )
-        slot_pattern = (
-            self.PATTERNS["snake"]
-            if not self.config.slot_pattern
-            else self.PATTERNS.get(self.config.slot_pattern, re.compile(self.config.slot_pattern))
-        )
-
-        enum_pattern = self.PATTERNS["uppercamel"]
-        permissible_value_pattern = (
-            self.PATTERNS["uppersnake"] if self.config.permissible_values_upper_case else self.PATTERNS["snake"]
-        )
-
-        if "class_definition" not in excluded_types:
-            for class_name in schema_view.all_classes(imports=False):
-                if class_pattern.fullmatch(class_name) is None:
-                    yield LinterProblem(f"Class has name '{class_name}'")
 
-        if "slot_definition" not in excluded_types:
-            for slot_name in schema_view.all_slots(imports=False):
-                if slot_pattern.fullmatch(slot_name) is None:
-                    yield LinterProblem(f"Slot has name '{slot_name}'")
-
-        for enum_name, enum_definition in schema_view.all_enums(imports=False).items():
-            if "enum_definition" not in excluded_types and enum_pattern.fullmatch(enum_name) is None:
-                yield LinterProblem(f"Enum has name '{enum_name}'")
+        if "permissible_value" not in excluded_types:
+            # add issues from the permissible values, if appropriate
+            pv_problems = (
+                LinterProblem(f"Permissible value of Enum '{en}' has name '{pv}'")
+                for en, en_def in schema_view.all_enums(imports=False).items()
+                for pv in en_def.permissible_values
+                if pv not in excluded_names and pattern["permissible_value"].fullmatch(pv) is None
+            )
+            # chain the generators together
+            return chain(problems, pv_problems)
 
-            if "permissible_value" not in excluded_types:
-                for permissible_value_name in enum_definition.permissible_values:
-                    if permissible_value_pattern.fullmatch(permissible_value_name) is None:
-                        yield LinterProblem(
-                            f"Permissible value of {self.format_element(enum_definition)} "
-                            f"has name '{permissible_value_name}'"
-                        )
+        return iter(problems)
 
 
 class CanonicalPrefixesRule(LinterRule):

linkml/utils/generator.py

@@ -51,7 +51,7 @@ from linkml_runtime.utils.formatutils import camelcase, underscore
 from linkml_runtime.utils.namespaces import Namespaces
 
 from linkml import LOCAL_METAMODEL_YAML_FILE
-from linkml.utils.cli_utils import DEFAULT_LOG_LEVEL_INT, log_level_option
+from linkml.cli.logging import DEFAULT_LOG_LEVEL_INT, log_level_option
 from linkml.utils.mergeutils import alias_root
 from linkml.utils.schemaloader import SchemaLoader
 from linkml.utils.typereferences import References

{linkml-1.9.3rc2.dist-info → linkml-1.9.4rc1.dist-info}/METADATA

@@ -1,62 +1,49 @@
-Metadata-Version: 2.3
+Metadata-Version: 2.4
 Name: linkml
-Version: 1.9.3rc2
+Version: 1.9.4rc1
 Summary: Linked Open Data Modeling Language
-License: Apache-2.0
-Keywords: schema,linked data,data modeling,rdf,owl,biolink
-Author: Chris Mungall
-Author-email: cjmungall@lbl.gov
-Requires-Python: >=3.9
+Author: Deepak Unni
+Author-email: Chris Mungall <cjmungall@lbl.gov>, Sierra Moxon <smoxon@lbl.gov>, Harold Solbrig <solbrig@jhu.edu>, Sujay Patil <spatil@lbl.gov>, Harshad Hegde <hhegde@lbl.gov>, Mark Andrew Miller <MAM@lbl.gov>, Gaurav Vaidya <gaurav@renci.org>, Kevin Schaper <kevin@tislab.org>
+License-Expression: Apache-2.0
+License-File: LICENSE
+Keywords: biolink,data modeling,linked data,owl,rdf,schema
 Classifier: Development Status :: 5 - Production/Stable
 Classifier: Environment :: Console
 Classifier: Intended Audience :: Developers
-Classifier: Intended Audience :: Science/Research
 Classifier: Intended Audience :: Healthcare Industry
-Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Classifier: Intended Audience :: Science/Research
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
-Provides-Extra: black
-Provides-Extra: numpydantic
-Provides-Extra: pandera
-Provides-Extra: polars-lts-cpu
-Provides-Extra: shacl
-Provides-Extra: tests
-Requires-Dist: antlr4-python3-runtime (>=4.9.0,<4.10)
-Requires-Dist: black (>=24.0.0) ; extra == "black"
-Requires-Dist: black (>=24.0.0) ; extra == "tests"
-Requires-Dist: click (>=7.0)
-Requires-Dist: graphviz (>=0.10.1)
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Requires-Python: >=3.9
+Requires-Dist: antlr4-python3-runtime<4.10,>=4.9.0
+Requires-Dist: click<8.2,>=8.0
+Requires-Dist: graphviz>=0.10.1
 Requires-Dist: hbreader
-Requires-Dist: isodate (>=0.6.0)
-Requires-Dist: jinja2 (>=3.1.0)
-Requires-Dist: jsonasobj2 (>=1.0.3,<2.0.0)
-Requires-Dist: jsonschema[format] (>=4.0.0)
-Requires-Dist: linkml-runtime (>=1.9.3,<2.0.0)
-Requires-Dist: numpydantic (>=1.6.1) ; extra == "numpydantic"
-Requires-Dist: numpydantic (>=1.6.1) ; extra == "tests"
+Requires-Dist: isodate>=0.6.0
+Requires-Dist: jinja2>=3.1.0
+Requires-Dist: jsonasobj2<2.0.0,>=1.0.3
+Requires-Dist: jsonschema[format]>=4.0.0
+Requires-Dist: linkml-runtime<2.0.0,>=1.9.4
 Requires-Dist: openpyxl
-Requires-Dist: pandera (>=0.19.0) ; extra == "pandera"
 Requires-Dist: parse
-Requires-Dist: polars-lts-cpu (>=1.0.0) ; extra == "polars-lts-cpu"
-Requires-Dist: prefixcommons (>=0.1.7)
-Requires-Dist: prefixmaps (>=0.2.2)
-Requires-Dist: pydantic (>=1.0.0,<3.0.0)
-Requires-Dist: pyjsg (>=0.11.6)
-Requires-Dist: pyshacl (>=0.25.0) ; extra == "shacl"
-Requires-Dist: pyshacl (>=0.25.0) ; extra == "tests"
-Requires-Dist: pyshex (>=0.7.20)
-Requires-Dist: pyshexc (>=0.8.3)
+Requires-Dist: prefixcommons>=0.1.7
+Requires-Dist: prefixmaps>=0.2.2
+Requires-Dist: pydantic<3.0.0,>=1.0.0
+Requires-Dist: pyjsg>=0.11.6
+Requires-Dist: pyshex>=0.7.20
+Requires-Dist: pyshexc>=0.8.3
 Requires-Dist: python-dateutil
 Requires-Dist: pyyaml
-Requires-Dist: rdflib (>=6.0.0)
-Requires-Dist: requests (>=2.22)
-Requires-Dist: sphinx-click (>=6.0.0)
-Requires-Dist: sqlalchemy (>=1.4.31)
-Requires-Dist: typing-extensions (>=4.6.0) ; python_version < "3.12"
-Requires-Dist: watchdog (>=0.9.0)
+Requires-Dist: rdflib>=6.0.0
+Requires-Dist: requests>=2.22
+Requires-Dist: sphinx-click>=6.0.0
+Requires-Dist: sqlalchemy>=1.4.31
+Requires-Dist: typing-extensions>=4.6.0; python_version < '3.12'
+Requires-Dist: watchdog>=0.9.0
 Description-Content-Type: text/markdown
 
 [![Pyversions](https://img.shields.io/pypi/pyversions/linkml.svg)](https://pypi.python.org/pypi/linkml)
@@ -78,4 +65,3 @@ This repo holds the tools for generating and working with LinkML. For the LinkML
 The complete documentation for LinkML can be found here:
 
  - [linkml.io/linkml](https://linkml.io/linkml)
-

{linkml-1.9.3rc2.dist-info → linkml-1.9.4rc1.dist-info}/RECORD

@@ -2,10 +2,48 @@ linkml/__init__.py,sha256=0REu65rXiOk3F1CYLzq60HiSZ2DfFySfGS6QFljZ01s,3663
 linkml/_version.py,sha256=udxv6OEqcE89DTVMYPtetXYg8IA8Sgc6yW26-6f8C3M,310
 linkml/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/cli/__main__.py,sha256=oPa7Fl2DQP40UivpIWNRr1CgwT2SQM0rhE478155zBY,80
+linkml/cli/logging.py,sha256=MdVbox1qr6kDUHUCWAmFhV-D6ebs_nn8vVwB8KDQfew,742
 linkml/cli/main.py,sha256=EncEEYMqaSlXj3pOEi8_xqZe12BYPW9IdEMJilGqIkI,5594
 linkml/generators/PythonGenNotes.md,sha256=SOzZhIBP_O8g46uBTnYy6A7nuP--hh-f_QXEERZRxdk,50822
 linkml/generators/README.md,sha256=fnkmT98lspv8a8FyBLOQsHoBKQaapFGb8H_Stg56dco,4436
 linkml/generators/__init__.py,sha256=AxTltouJeNayg3sJmVM7h4JkCx8NxGa4AV-_awtvfmo,1669
+linkml/generators/csvgen.py,sha256=gPwX5GuwToD2KQF7SrINatqwMYY-54ZsgDTgYH1EM1Y,3242
+linkml/generators/dbmlgen.py,sha256=6TvpdvTEPoprdBHuJpbfIb1Ejwpp20kGNUvW5Av7cpo,5465
+linkml/generators/docgen.py,sha256=Xw1Urg6y6UgYl7jYQWUufC3sV1AgVfUtM6kUUFpC9UU,43316
+linkml/generators/dotgen.py,sha256=DR1tC-vZ7Vj-NxEkE-zOPGrwPUIk5Bo2LISsJpS0rUk,5022
+linkml/generators/erdiagramgen.py,sha256=lUHFkiOHiOLvymnKoJ2Erl0SZzXvSnqJzKGfl5K-MyI,12100
+linkml/generators/excelgen.py,sha256=81x0Ib13ZjLC5WBWsH0aePn8swv_pjZnwV4X-T4q4Jc,7684
+linkml/generators/golanggen.py,sha256=oBXY0gUz2OzI8uKjubUT9WeBJ4TdoOYUqXxNqeEG1gM,5834
+linkml/generators/golrgen.py,sha256=92hswWdusngnGDGD3vpX_iHbIDYRZrRV5xWkpxG7nxw,3448
+linkml/generators/graphqlgen.py,sha256=34qGKjNqz6jJg4b6ClGAA1ffOscSPpeemM3IkifDuRg,3485
+linkml/generators/javagen.py,sha256=BTAXgvOOvRa3AOfaaiVFyuyaqg4XFR_JbO6_7tT_AnQ,5335
+linkml/generators/jsonldcontextgen.py,sha256=opDZ0q_rc-E8yKeieWZbrMk-np8fheyMVB5jnxmMOz4,8946
+linkml/generators/jsonldgen.py,sha256=pHSCmZ_qKdzVot_J8XFhPAyYOUYap7Vt6NGigM0-SQ0,7842
+linkml/generators/jsonschemagen.py,sha256=gVfeEzz9izxI231oA48pDc4vTP7rvUUkySmw2T8PNoo,30887
+linkml/generators/linkmlgen.py,sha256=j8T7O-_i7JAa87EnHgSqmdeD4RsXOD66MqZU7P-tX2c,4221
+linkml/generators/markdowngen.py,sha256=_4RfmuMNR-m90QdmbG26iFQC_ZSaUBDUWPX_hsqZPLY,35530
+linkml/generators/mermaidclassdiagramgen.py,sha256=9HEcXntK0lL4T2wYpKzeFyTg6rRUt1ZiOVdZgA_l4eg,5145
+linkml/generators/namespacegen.py,sha256=C4p9LSwsnDqf6sv-wG5l0VQniWFJ1HA1hRXJBDOg3pM,6467
+linkml/generators/oocodegen.py,sha256=dgcHhpO81qC2Tx-kG_VhZVaoRjOwrcrulIXV8gEU1bY,7808
+linkml/generators/owlgen.py,sha256=HcW5EIohi9YMd6pXH62bAesZrrbBt5H8-4eQ3Eab6ow,58095
+linkml/generators/plantumlgen.py,sha256=S05S13kxDLeKJihZ7BZesuj_8-tQUzsWjL6S478dzQg,15603
+linkml/generators/prefixmapgen.py,sha256=X-3K1q5WcSS8TL7rHBOL4qBGBk2Szr7l1_UzRQVvFGA,4246
+linkml/generators/projectgen.py,sha256=qvXIWDfrPYKZT38JCyItQjW1AZofJ4ZyPZeUkscZxOo,9586
+linkml/generators/protogen.py,sha256=a4KUyKj525tuE2YenEJQ_IkbNKnnhVH_N-qTEmMBVY4,2524
+linkml/generators/pythongen.py,sha256=soc3EgUpp1dYwRWx--aVGWo9emCNhj9TvcJsUNunlwE,55847
+linkml/generators/rdfgen.py,sha256=33m01NKAF-AfOLwq_g6I9itle43_u4Ek10mLT8mmuYs,2963
+linkml/generators/shaclgen.py,sha256=qas_rqhwx7IpnIKAKOtxUTPB7EdhiCcTOLVJQbLOOsk,15277
+linkml/generators/shexgen.py,sha256=fVwrYRifsojiPu6vM1oNwnkSEp4uX-QognHOExJs0cY,9933
+linkml/generators/sparqlgen.py,sha256=1WjZQFNk3QXMaJhVeztJ1uWg8qojLyGGBdAKSjpVQaI,6176
+linkml/generators/sqlalchemygen.py,sha256=b8vrigGOso66qQrZKlvawRDz-1oDu5LyL-X4F-mkTdc,9053
+linkml/generators/sqltablegen.py,sha256=83j-4ImIZIwz1WTy1fHMGYbP7WjWpN6K0AuNQnXPeXw,18178
+linkml/generators/sssomgen.py,sha256=zrZy0WL9fF5bk-XAcB-MZYZkhHhqVRHt2rGBUtfqnLY,6891
+linkml/generators/string_template.md,sha256=UMEgU5-JLBEoSpoZ0SKuzcZV6El3vcApm-cvsegsE1c,1780
+linkml/generators/summarygen.py,sha256=abNd39Z-Kn3FX2fjXLeCqvXvFunpqM7UFPimtiCB2p0,3081
+linkml/generators/terminusdbgen.py,sha256=Zizvh_GLBO9LK_X11gUvB_Ip1ttkkfiD4OZBtxjgAG4,4669
+linkml/generators/typescriptgen.py,sha256=wRnZpZ3LEepJRFYHVNP06PX5rPFzIDPglDRxi0Z6Zro,8870
+linkml/generators/yamlgen.py,sha256=PWexYoR3wHRoAUk6zK67fRYjBF6sAmX_iGlOAT0PJq0,1623
+linkml/generators/yumlgen.py,sha256=ZK42N3hJPvvOdztOWCwysARrGVWjg5V4Qx2XcS2Vvgc,13277
 linkml/generators/common/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/generators/common/build.py,sha256=X2QDnybdr5GwDIaXWfwAzIqduqk7_rDReU-7CvcJ2OI,2835
 linkml/generators/common/ifabsent_processor.py,sha256=qefNF_rd24DxF4IGAynR9J7zWGH-oMfDULNbFMvZalA,13527
@@ -13,53 +51,30 @@ linkml/generators/common/lifecycle.py,sha256=Rx9q8shhS_e-4Hx_06wOVR1ZW7I3rqNS8_b
 linkml/generators/common/naming.py,sha256=KkY3KCTX3DM30VbPjfIS6icEc-IxUNF9hE8GXreDAv4,5081
 linkml/generators/common/template.py,sha256=AmHcTlPnN23H4IvuX70AiTRzd-V16zNFBb7d3cCntFU,3326
 linkml/generators/common/type_designators.py,sha256=ORA9siVxHUXqn3TMuun81m_whqZcX3Zrnn1FDf6dK7c,1931
-linkml/generators/csvgen.py,sha256=gPwX5GuwToD2KQF7SrINatqwMYY-54ZsgDTgYH1EM1Y,3242
-linkml/generators/dbmlgen.py,sha256=6TvpdvTEPoprdBHuJpbfIb1Ejwpp20kGNUvW5Av7cpo,5465
 linkml/generators/docgen/class.md.jinja2,sha256=2QI-9DpqZ9XJc-g2RwiBa2EkWeDeg4j4HH5cxgE_A3w,4336
 linkml/generators/docgen/class_diagram.md.jinja2,sha256=UCpMYgzbcRsXpb7TnUsCUqIu0yWCEOvPB6o7IOvZFuA,3728
 linkml/generators/docgen/common_metadata.md.jinja2,sha256=SojKaesnnpnyIIc4uK5NWZJ-IOgHVSHY4q8ybowF5rE,1607
-linkml/generators/docgen/enum.md.jinja2,sha256=WmKrDAPqO-jMfZf3d2d4mX7K9AcxO8ISDo3vCFBn_bo,1130
+linkml/generators/docgen/enum.md.jinja2,sha256=gfg93ip8uI4Rdop1RWpPtEecyitWzFRGHl7_8c2NP3A,1134
 linkml/generators/docgen/index.md.jinja2,sha256=tMjfyDa_ryem7x4gAYGEdo_jLcZf5fKAoWb0zEnErtU,1532
 linkml/generators/docgen/index.tex.jinja2,sha256=JDMwtc5UHParKN_w9wpz2dXIMBiOYC4D2KrhQE9YDUo,503
 linkml/generators/docgen/schema.md.jinja2,sha256=3hbrhdv2oDqekPBP4I4xz3vS4igsqOVl7gUlpOZE2FA,172
 linkml/generators/docgen/slot.md.jinja2,sha256=ZJZrofpPy6U0CltTHIW6MffV48CJVyQqHkfjLdTtZl0,3516
 linkml/generators/docgen/subset.md.jinja2,sha256=KrLBUyFA_m3G9EHGy1CUFkglaL0EwgURlKQCu0CkVJM,2817
 linkml/generators/docgen/type.md.jinja2,sha256=126SvOOXG4sYLKZvgIPNdHRPsM3fePpbMgfNICpvpKk,741
-linkml/generators/docgen.py,sha256=UZYm3IRhkNtj2NyxVhsb2Q12P6pC3TqRpt0SJiaGjmU,43363
-linkml/generators/dotgen.py,sha256=DR1tC-vZ7Vj-NxEkE-zOPGrwPUIk5Bo2LISsJpS0rUk,5022
-linkml/generators/erdiagramgen.py,sha256=hiF933DGY3GD2A-xu0LtivTH96iolUcZYcEewFyQ08Y,11451
-linkml/generators/excelgen.py,sha256=81x0Ib13ZjLC5WBWsH0aePn8swv_pjZnwV4X-T4q4Jc,7684
-linkml/generators/golanggen.py,sha256=oBXY0gUz2OzI8uKjubUT9WeBJ4TdoOYUqXxNqeEG1gM,5834
-linkml/generators/golrgen.py,sha256=92hswWdusngnGDGD3vpX_iHbIDYRZrRV5xWkpxG7nxw,3448
-linkml/generators/graphqlgen.py,sha256=34qGKjNqz6jJg4b6ClGAA1ffOscSPpeemM3IkifDuRg,3485
 linkml/generators/javagen/example_template.java.jinja2,sha256=r9vyzZxIMRKI55Js790G-sxmbMIaOekp46eEWM9FLDk,443
 linkml/generators/javagen/java_record_template.jinja2,sha256=OQZffLSy_xR3FIhQMltvrYyVeut7l2Q-tzK7AOiVmWs,1729
-linkml/generators/javagen.py,sha256=BTAXgvOOvRa3AOfaaiVFyuyaqg4XFR_JbO6_7tT_AnQ,5335
-linkml/generators/jsonldcontextgen.py,sha256=opDZ0q_rc-E8yKeieWZbrMk-np8fheyMVB5jnxmMOz4,8946
-linkml/generators/jsonldgen.py,sha256=pHSCmZ_qKdzVot_J8XFhPAyYOUYap7Vt6NGigM0-SQ0,7842
-linkml/generators/jsonschemagen.py,sha256=gVfeEzz9izxI231oA48pDc4vTP7rvUUkySmw2T8PNoo,30887
 linkml/generators/legacy/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-linkml/generators/linkmlgen.py,sha256=j8T7O-_i7JAa87EnHgSqmdeD4RsXOD66MqZU7P-tX2c,4221
-linkml/generators/markdowngen.py,sha256=_4RfmuMNR-m90QdmbG26iFQC_ZSaUBDUWPX_hsqZPLY,35530
-linkml/generators/mermaidclassdiagramgen.py,sha256=9HEcXntK0lL4T2wYpKzeFyTg6rRUt1ZiOVdZgA_l4eg,5145
-linkml/generators/namespacegen.py,sha256=C4p9LSwsnDqf6sv-wG5l0VQniWFJ1HA1hRXJBDOg3pM,6467
-linkml/generators/oocodegen.py,sha256=dgcHhpO81qC2Tx-kG_VhZVaoRjOwrcrulIXV8gEU1bY,7808
-linkml/generators/owlgen.py,sha256=HcW5EIohi9YMd6pXH62bAesZrrbBt5H8-4eQ3Eab6ow,58095
 linkml/generators/panderagen/__init__.py,sha256=Bcthn0rKU6xzQoBU--hfTUJwyOvKjASGICYamEglzcQ,109
 linkml/generators/panderagen/class_generator_mixin.py,sha256=LKdpKb1_pyBN3iyhzsQE_Q9A3S9CnXj0RQUDQw0_Ly4,826
 linkml/generators/panderagen/enum_generator_mixin.py,sha256=CMILBMjP35L8HHdp7WuO0dAHe9zEVBvN5CBSQlq41_g,708
 linkml/generators/panderagen/panderagen.py,sha256=OxLZrVLzUD5PrmomsC0MYaUM8v0R4djKHDtVr6UjPjQ,6445
+linkml/generators/panderagen/slot_generator_mixin.py,sha256=mDoyptHXiR4TehDmSe3cYX4Mpa1oJUH8apPiJEKycLo,2586
 linkml/generators/panderagen/panderagen_class_based/class.jinja2,sha256=56Pb-6iiGgyfcCT1oE7mD4Rbs637SLgn2wsqH3Eyzwc,686
 linkml/generators/panderagen/panderagen_class_based/enums.jinja2,sha256=7eXfmoz7F6Tb2aYumTwW6UrwrQvqD73oYTi-LbmNCVw,295
 linkml/generators/panderagen/panderagen_class_based/header.jinja2,sha256=shLPwNAjIPMgR7uoqZWUxo4a_OtV15ywSjYh0m9dIKo,396
 linkml/generators/panderagen/panderagen_class_based/mixins.jinja2,sha256=JCgwGre4FuoEUSbPrg5MRJXZbcx5_3uCt-JuBsG3LRY,955
 linkml/generators/panderagen/panderagen_class_based/pandera.jinja2,sha256=Vlh5tdp7T9gbPst1RR72PdFeboE4Ha0yX5wILXHeZyE,506
 linkml/generators/panderagen/panderagen_class_based/slots.jinja2,sha256=cy8LKkGNDkNZBoECVOwkvN0MKLj0U_KrgkiOaY317Rc,1416
-linkml/generators/panderagen/slot_generator_mixin.py,sha256=mDoyptHXiR4TehDmSe3cYX4Mpa1oJUH8apPiJEKycLo,2586
-linkml/generators/plantumlgen.py,sha256=S05S13kxDLeKJihZ7BZesuj_8-tQUzsWjL6S478dzQg,15603
-linkml/generators/prefixmapgen.py,sha256=X-3K1q5WcSS8TL7rHBOL4qBGBk2Szr7l1_UzRQVvFGA,4246
-linkml/generators/projectgen.py,sha256=jo2sMAIES1UG1l_auPACsL81aaTPU9obrGHGGMAFqEM,9590
-linkml/generators/protogen.py,sha256=a4KUyKj525tuE2YenEJQ_IkbNKnnhVH_N-qTEmMBVY4,2524
 linkml/generators/pydanticgen/__init__.py,sha256=5SUFNcrh-6MLfMqptR6wPsR2v1Gyrl3wii-yu6kdnQM,700
 linkml/generators/pydanticgen/array.py,sha256=TD3_LStHfGGY1TI7jn_9DeyvLMBmgM4kc0JeOWGzSbs,25803
 linkml/generators/pydanticgen/black.py,sha256=BaJ7b-kMUbIN_cKRT3yCaMEbFwxzj1_U7w4fKQnkL44,723
@@ -78,42 +93,28 @@ linkml/generators/pydanticgen/templates/module.py.jinja,sha256=hqZKsJ72yUioBkZAu
 linkml/generators/pydanticgen/templates/validator.py.jinja,sha256=oz8XWh4Mt7DRHH0KObKGZWl_WUoR0KzoGMkLOh-NXFU,525
 linkml/generators/python/__init__.py,sha256=NS9fPEuAo0punDplD91F9mcViXMJJv04Q5NkFcKPNvY,40
 linkml/generators/python/python_ifabsent_processor.py,sha256=AqFabuyHCBpPTLO2-XO1uWNh3YcIpc-Na_649o_VmLc,3834
-linkml/generators/pythongen.py,sha256=soc3EgUpp1dYwRWx--aVGWo9emCNhj9TvcJsUNunlwE,55847
-linkml/generators/rdfgen.py,sha256=33m01NKAF-AfOLwq_g6I9itle43_u4Ek10mLT8mmuYs,2963
 linkml/generators/shacl/__init__.py,sha256=KgMOyESGTdKk2Vhx9uuUYgEJPuJQ-iT1vDQVIMoiXCM,58
 linkml/generators/shacl/shacl_data_type.py,sha256=gX3Y2KyTVPwMyef0cJMTEpU9h0oH-H0ThVDORdNW170,1828
 linkml/generators/shacl/shacl_ifabsent_processor.py,sha256=rjxD5OSa7s66ALSj_8CqAqU8oj2NiE4nfOQJ6xCSpjA,4363
-linkml/generators/shaclgen.py,sha256=qas_rqhwx7IpnIKAKOtxUTPB7EdhiCcTOLVJQbLOOsk,15277
-linkml/generators/shexgen.py,sha256=fVwrYRifsojiPu6vM1oNwnkSEp4uX-QognHOExJs0cY,9933
-linkml/generators/sparqlgen.py,sha256=1WjZQFNk3QXMaJhVeztJ1uWg8qojLyGGBdAKSjpVQaI,6176
 linkml/generators/sqlalchemy/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/generators/sqlalchemy/sqlalchemy_declarative_template.py,sha256=X_Ws1NUBikMI5HuNgEhl_PIeWM-B-c2B0W9KUBH4QTg,2542
 linkml/generators/sqlalchemy/sqlalchemy_imperative_template.py,sha256=u4ZpponG1h6XROrOHGOf_0H2e6xL1_s8twAOA-gx94A,1622
-linkml/generators/sqlalchemygen.py,sha256=b8vrigGOso66qQrZKlvawRDz-1oDu5LyL-X4F-mkTdc,9053
-linkml/generators/sqltablegen.py,sha256=83j-4ImIZIwz1WTy1fHMGYbP7WjWpN6K0AuNQnXPeXw,18178
-linkml/generators/sssomgen.py,sha256=zrZy0WL9fF5bk-XAcB-MZYZkhHhqVRHt2rGBUtfqnLY,6891
-linkml/generators/string_template.md,sha256=UMEgU5-JLBEoSpoZ0SKuzcZV6El3vcApm-cvsegsE1c,1780
-linkml/generators/summarygen.py,sha256=abNd39Z-Kn3FX2fjXLeCqvXvFunpqM7UFPimtiCB2p0,3081
-linkml/generators/terminusdbgen.py,sha256=Zizvh_GLBO9LK_X11gUvB_Ip1ttkkfiD4OZBtxjgAG4,4669
-linkml/generators/typescriptgen.py,sha256=wRnZpZ3LEepJRFYHVNP06PX5rPFzIDPglDRxi0Z6Zro,8870
-linkml/generators/yamlgen.py,sha256=PWexYoR3wHRoAUk6zK67fRYjBF6sAmX_iGlOAT0PJq0,1623
-linkml/generators/yumlgen.py,sha256=ZK42N3hJPvvOdztOWCwysARrGVWjg5V4Qx2XcS2Vvgc,13277
 linkml/linter/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/linter/cli.py,sha256=0Bt7-A1zUTJK3rzFj1O-uvLXc0JsO5vkxODvkWOPgT4,4552
-linkml/linter/config/datamodel/.linkmllint.yaml,sha256=40rNhcL35FXQSjlVBMWnyPgplwEUqFT_sJmeZqUzxMw,292
-linkml/linter/config/datamodel/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-linkml/linter/config/datamodel/config.py,sha256=nU9-BMqWcdSaJrMMX7pauljPyGNo9yGRHP2kiUxXO6E,22971
-linkml/linter/config/datamodel/config.yaml,sha256=oJzH3H_N9OzqFwr-ThPEvs0OQI82E07rEAM5dm_7Ndw,9741
+linkml/linter/linter.py,sha256=O7X2i6w-YWKl26FL7WXw9Beh4xkhmYi30PuD_FE3cM8,5187
+linkml/linter/rules.py,sha256=WKTDIA8iQbTOi_hUOEY6AwRY_Xa56AcIJOHQ8oJ0qnc,17342
 linkml/linter/config/default.yaml,sha256=sDKkS9RXhSy7U6YCr5bbzPpCYCvChy6c9PsRd49tJRc,730
 linkml/linter/config/recommended.yaml,sha256=iPvaevOWgNge0ECAQoXE1v78lY_te7i9nyE-xr7pqdc,316
+linkml/linter/config/datamodel/.linkmllint.yaml,sha256=40rNhcL35FXQSjlVBMWnyPgplwEUqFT_sJmeZqUzxMw,292
+linkml/linter/config/datamodel/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+linkml/linter/config/datamodel/config.py,sha256=juLR811BlMagvLY_qrT2rbOGqiC3S7PO9MrdvWJHHNU,23821
+linkml/linter/config/datamodel/config.yaml,sha256=z2EFvMXAFL_7hIrBrq_0SK5EQIa14p7VOSGfVUyTtCc,10018
 linkml/linter/formatters/__init__.py,sha256=lKTbA20yL_TuimKZIBI1DGXgDO7D4QSrJ3zZFCJRwu0,269
 linkml/linter/formatters/formatter.py,sha256=u2DNowT7Nx1rexCMJmghlXklTYb98_Glj5qhnhjTkBc,518
 linkml/linter/formatters/json_formatter.py,sha256=rrOELuETUCFTl1Ewnrus9Rx9hl2g4uucrMfN6yw33iI,767
 linkml/linter/formatters/markdown_formatter.py,sha256=G7B2kIi6_EL_att73OSW6zF6hG-vPbNmicZHR5L6n-w,2599
 linkml/linter/formatters/terminal_formatter.py,sha256=xmNwlRieVCssRt3fpnNP5WWw_YXGmaBsbxFoMWufy5M,2085
 linkml/linter/formatters/tsv_formatter.py,sha256=1VW-1Tv16mwhIDpHdExYpJJR3z42K5_XK2C-4mmYYdE,871
-linkml/linter/linter.py,sha256=O7X2i6w-YWKl26FL7WXw9Beh4xkhmYi30PuD_FE3cM8,5187
-linkml/linter/rules.py,sha256=uzUcFdHAfkm1Pd-WSMJFuIYQI7LlzV-E-vSHgc5zvEo,16912
 linkml/reporting/__init__.py,sha256=Jo0V_nyEcnWhMukMW-bqW9dlbgCfaRlWm3CO-XzgU84,92
 linkml/reporting/model.py,sha256=_HY5Htuyu4AnH3F22FMSd6fBWdMqyeW_gN808Ng05So,8385
 linkml/transformers/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -123,14 +124,13 @@ linkml/transformers/relmodel_transformer.py,sha256=g3WhT3FyNlxP36lFaJzSh9v9eZweN
 linkml/transformers/rollup_transformer.py,sha256=YP3RyYa0TzfkTrPZ4LnTIedmQWCnneFk3wAT77E1Amc,4549
 linkml/transformers/schema_renamer.py,sha256=DvXsAsxAb8p8RAxR_c74zbn_VRFN1JHCLHcjH9z7qr0,5263
 linkml/utils/__init__.py,sha256=Pkyv-Gfb8QoJdInRdJuuUz1Igfe0sT9t8Gv3V_fyTXc,92
-linkml/utils/cli_utils.py,sha256=MdVbox1qr6kDUHUCWAmFhV-D6ebs_nn8vVwB8KDQfew,742
 linkml/utils/converter.py,sha256=0xcUXdVPUXZvVuHivUibfVMoCd24oPsjYU1M17H173U,7121
 linkml/utils/datautils.py,sha256=QlbzwXykh5Fphfe5KxPo6_ekXfniLbHiEGJtLWjUrvY,3742
 linkml/utils/datavalidator.py,sha256=kBdWaVi8IZT1bOwEJgJYx-wZAb_PTBObB9nHpYORfKA,472
 linkml/utils/deprecation.py,sha256=fFd_rUmTJInovuhuHVZf_44fQRve6FyJ43DY2-0XLmA,9781
 linkml/utils/exceptions.py,sha256=3S6lf5WAUgVvjPRaES597_YjUjbbJ5KqjKjpjcaRLoU,217
 linkml/utils/execute_tutorial.py,sha256=gGgkuTjP8Tsb-4imsNAa_1ESlrsl3qCz02skFvhI5dE,10587
-linkml/utils/generator.py,sha256=WIiH1VzmDKMl438u9gBYMDRXRawsBKylVL3TyrMiZ78,39693
+linkml/utils/generator.py,sha256=vWQQntyLFN-tKDL06_RxdPR5ee0NNOvTqthApGZSNSo,39689
 linkml/utils/helpers.py,sha256=MomYM4Oof-c1SgyMpjoG0Aob-eaVeF8kXvuzdJiKo_g,3351
 linkml/utils/logictools.py,sha256=dvwuX6DU0PZyxhVr9kphyQFttqZNSbbIRZ7vtTh2gU8,23649
 linkml/utils/mergeutils.py,sha256=uXHuyc13MhATMPaDToSsJlMTXeqQ9AGVEj7uOlcGGLE,10505
@@ -144,6 +144,9 @@ linkml/utils/typereferences.py,sha256=CcL8ieqFgLq13pvVtYxcJmVy5BzmRpK7VsC0ZVH7mc
 linkml/utils/validation.py,sha256=WIxcd8wm6z4S7NcMc-nebpeBWarFxiPHVSAQzqLBs6U,1491
 linkml/validator/__init__.py,sha256=rhGXoxyxY3ZMJYwB29HYYzXbwSbMxxE-OmB2ouQIvVw,4995
 linkml/validator/cli.py,sha256=tVvlSOlW5L4sLZFhJ_15xqOmUdeIVrBvQ5nJ4bTnk08,7691
+linkml/validator/report.py,sha256=fhXGkm1Yxdy1fmxJD08Kn_yZ7FikJMW0LVPmZiF4lHw,1055
+linkml/validator/validation_context.py,sha256=Pmccq-LQ9iEeLyZhamp3mKjjtwp4ji1hIe5TT05AUT4,2732
+linkml/validator/validator.py,sha256=cUcUCfn3lqsOiG_5jL60CZKElY06DWLrdi5RQhB3pE4,5674
 linkml/validator/loaders/__init__.py,sha256=FjUqEfBHeT5PEMBEZ9XwpclyQOysr4OCI1M0w_MYPVc,1165
 linkml/validator/loaders/delimited_file_loader.py,sha256=aj1UORvz27fQy-QtM1O5MrtHFZ3PUn1mhnIPRmbgzXQ,2643
 linkml/validator/loaders/json_loader.py,sha256=ZdS0Xn2Z7lUINyETQj6tPd0Tu2YpvB1fqxEztxmrpYI,836
@@ -156,19 +159,16 @@ linkml/validator/plugins/pydantic_validation_plugin.py,sha256=dJ-LDUtbD8Y6tH1RE-
 linkml/validator/plugins/recommended_slots_plugin.py,sha256=6P2WYNgA_UPSJja_0jhh4hlLD6P8HXIkefnD9IxH4Hc,2359
 linkml/validator/plugins/shacl_validation_plugin.py,sha256=4QxFAhuMKKkKTl8VDtD-FTBqnXsQEoG_d3osDKggcQk,3915
 linkml/validator/plugins/validation_plugin.py,sha256=Gx4S5nFZ7DPoYIGlFe_o2vQJyCX0vBB3Qk2t606IfFs,1557
-linkml/validator/report.py,sha256=fhXGkm1Yxdy1fmxJD08Kn_yZ7FikJMW0LVPmZiF4lHw,1055
-linkml/validator/validation_context.py,sha256=Pmccq-LQ9iEeLyZhamp3mKjjtwp4ji1hIe5TT05AUT4,2732
-linkml/validator/validator.py,sha256=cUcUCfn3lqsOiG_5jL60CZKElY06DWLrdi5RQhB3pE4,5674
 linkml/validators/__init__.py,sha256=43W3J5NPKhwa3ZFHLRYsJMocwQKWGYCF9Ki9r0ccGbc,202
 linkml/validators/jsonschemavalidator.py,sha256=_2nXfM5ti42S3nx-msPrCevL5h7KCm15o0tJImQQ-XA,8384
 linkml/validators/sparqlvalidator.py,sha256=xlf9hZ-XDeScv2WB9wBg17WKM8HOKmRPowozOzlOLSQ,4961
 linkml/workspaces/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+linkml/workspaces/example_runner.py,sha256=EjaAn6vaAKZnFcW5hRopkYBguiaR05aqKbuaM-o_7IE,12940
 linkml/workspaces/datamodel/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/workspaces/datamodel/workspaces.py,sha256=YIGzErECZuMER03h3DcuY3psMb0lDF1Pia_8hreKoTE,14667
 linkml/workspaces/datamodel/workspaces.yaml,sha256=LU0lMJ4W6Tk66r5ECD7OkaVm9kCRfu93yoik1b4gkzQ,4228
-linkml/workspaces/example_runner.py,sha256=EjaAn6vaAKZnFcW5hRopkYBguiaR05aqKbuaM-o_7IE,12940
-linkml-1.9.3rc2.dist-info/LICENSE,sha256=zsURghk1UIVsx0jaDvEy5QU2UAqecv1vtJozTV8Hwvw,536
-linkml-1.9.3rc2.dist-info/METADATA,sha256=29VpSkHtXf1hL7ETI3YbuuOcpelavTQ0E9rSKMofyvQ,3723
-linkml-1.9.3rc2.dist-info/WHEEL,sha256=b4K_helf-jlQoXBBETfwnf4B04YC67LOev0jo4fX5m8,88
-linkml-1.9.3rc2.dist-info/entry_points.txt,sha256=AgYAJBnCIEYZsOidFnZKRbTJRxMRtmapbXbtx5imB0E,2239
-linkml-1.9.3rc2.dist-info/RECORD,,
+linkml-1.9.4rc1.dist-info/METADATA,sha256=NgqQ9Spo4HP62ByQzFPMlz_xq7mtKW_WK_4eZQKO7ps,3344
+linkml-1.9.4rc1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+linkml-1.9.4rc1.dist-info/entry_points.txt,sha256=BXonQU9A7VqkPV5UA2r0vz0qLdAznpTovTFEI7FGlgE,2336
+linkml-1.9.4rc1.dist-info/licenses/LICENSE,sha256=zsURghk1UIVsx0jaDvEy5QU2UAqecv1vtJozTV8Hwvw,536
+linkml-1.9.4rc1.dist-info/RECORD,,

{linkml-1.9.3rc2.dist-info → linkml-1.9.4rc1.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: poetry-core 2.1.3
+Generator: hatchling 1.27.0
 Root-Is-Purelib: true
 Tag: py3-none-any

linkml-1.9.4rc1.dist-info/entry_points.txt

@@ -0,0 +1,50 @@
+[console_scripts]
+gen-csv = linkml.generators.csvgen:cli
+gen-dbml = linkml.generators.dbmlgen:cli
+gen-doc = linkml.generators.docgen:cli
+gen-erdiagram = linkml.generators.erdiagramgen:cli
+gen-excel = linkml.generators.excelgen:cli
+gen-golang = linkml.generators.golanggen:cli
+gen-golr-views = linkml.generators.golrgen:cli
+gen-graphql = linkml.generators.graphqlgen:cli
+gen-graphviz = linkml.generators.dotgen:cli
+gen-java = linkml.generators.javagen:cli
+gen-json-schema = linkml.generators.jsonschemagen:cli
+gen-jsonld = linkml.generators.jsonldgen:cli
+gen-jsonld-context = linkml.generators.jsonldcontextgen:cli
+gen-linkml = linkml.generators.linkmlgen:cli
+gen-markdown = linkml.generators.markdowngen:cli
+gen-mermaid-class-diagram = linkml.generators.mermaidclassdiagramgen:cli
+gen-namespaces = linkml.generators.namespacegen:cli
+gen-owl = linkml.generators.owlgen:cli
+gen-pandera = linkml.generators.panderagen:cli
+gen-plantuml = linkml.generators.plantumlgen:cli
+gen-prefix-map = linkml.generators.prefixmapgen:cli
+gen-project = linkml.generators.projectgen:cli
+gen-proto = linkml.generators.protogen:cli
+gen-py-classes = linkml.generators.pythongen:cli
+gen-pydantic = linkml.generators.pydanticgen:cli
+gen-python = linkml.generators.pythongen:cli
+gen-rdf = linkml.generators.rdfgen:cli
+gen-shacl = linkml.generators.shaclgen:cli
+gen-shex = linkml.generators.shexgen:cli
+gen-sparql = linkml.generators.sparqlgen:cli
+gen-sqla = linkml.generators.sqlalchemygen:cli
+gen-sqlddl = linkml.generators.sqltablegen:cli
+gen-sqltables = linkml.generators.sqltablegen:cli
+gen-sssom = linkml.generators.sssomgen:cli
+gen-summary = linkml.generators.summarygen:cli
+gen-terminusdb = linkml.generators.terminusdbgen:cli
+gen-typescript = linkml.generators.typescriptgen:cli
+gen-yaml = linkml.generators.yamlgen:cli
+gen-yuml = linkml.generators.yumlgen:cli
+linkml = linkml.cli.main:linkml
+linkml-convert = linkml.utils.converter:cli
+linkml-jsonschema-validate = linkml.validators.jsonschemavalidator:cli
+linkml-lint = linkml.linter.cli:main
+linkml-run-examples = linkml.workspaces.example_runner:cli
+linkml-schema-fixer = linkml.utils.schema_fixer:main
+linkml-sparql-validate = linkml.validators.sparqlvalidator:cli
+linkml-sqldb = linkml.utils.sqlutils:main
+linkml-validate = linkml.validator.cli:cli
+run-tutorial = linkml.utils.execute_tutorial:cli

linkml-1.9.3rc2.dist-info/entry_points.txt

@@ -1,51 +0,0 @@
-[console_scripts]
-gen-csv=linkml.generators.csvgen:cli
-gen-dbml=linkml.generators.dbmlgen:cli
-gen-doc=linkml.generators.docgen:cli
-gen-erdiagram=linkml.generators.erdiagramgen:cli
-gen-excel=linkml.generators.excelgen:cli
-gen-golang=linkml.generators.golanggen:cli
-gen-golr-views=linkml.generators.golrgen:cli
-gen-graphql=linkml.generators.graphqlgen:cli
-gen-graphviz=linkml.generators.dotgen:cli
-gen-java=linkml.generators.javagen:cli
-gen-json-schema=linkml.generators.jsonschemagen:cli
-gen-jsonld=linkml.generators.jsonldgen:cli
-gen-jsonld-context=linkml.generators.jsonldcontextgen:cli
-gen-linkml=linkml.generators.linkmlgen:cli
-gen-markdown=linkml.generators.markdowngen:cli
-gen-mermaid-class-diagram=linkml.generators.mermaidclassdiagramgen:cli
-gen-namespaces=linkml.generators.namespacegen:cli
-gen-owl=linkml.generators.owlgen:cli
-gen-pandera=linkml.generators.panderagen:cli
-gen-plantuml=linkml.generators.plantumlgen:cli
-gen-prefix-map=linkml.generators.prefixmapgen:cli
-gen-project=linkml.generators.projectgen:cli
-gen-proto=linkml.generators.protogen:cli
-gen-py-classes=linkml.generators.pythongen:cli
-gen-pydantic=linkml.generators.pydanticgen:cli
-gen-python=linkml.generators.pythongen:cli
-gen-rdf=linkml.generators.rdfgen:cli
-gen-shacl=linkml.generators.shaclgen:cli
-gen-shex=linkml.generators.shexgen:cli
-gen-sparql=linkml.generators.sparqlgen:cli
-gen-sqla=linkml.generators.sqlalchemygen:cli
-gen-sqlddl=linkml.generators.sqltablegen:cli
-gen-sqltables=linkml.generators.sqltablegen:cli
-gen-sssom=linkml.generators.sssomgen:cli
-gen-summary=linkml.generators.summarygen:cli
-gen-terminusdb=linkml.generators.terminusdbgen:cli
-gen-typescript=linkml.generators.typescriptgen:cli
-gen-yaml=linkml.generators.yamlgen:cli
-gen-yuml=linkml.generators.yumlgen:cli
-linkml=linkml.cli.main:linkml
-linkml-convert=linkml.utils.converter:cli
-linkml-jsonschema-validate=linkml.validators.jsonschemavalidator:cli
-linkml-lint=linkml.linter.cli:main
-linkml-run-examples=linkml.workspaces.example_runner:cli
-linkml-schema-fixer=linkml.utils.schema_fixer:main
-linkml-sparql-validate=linkml.validators.sparqlvalidator:cli
-linkml-sqldb=linkml.utils.sqlutils:main
-linkml-validate=linkml.validator.cli:cli
-run-tutorial=linkml.utils.execute_tutorial:cli
-