linkml 1.8.5__py3-none-any.whl → 1.8.7__py3-none-any.whl

linkml/utils/helpers.py

@@ -1,4 +1,13 @@
 import re
+from functools import lru_cache
+from typing import List, Tuple, Union
+
+from linkml_runtime import SchemaView
+from linkml_runtime.linkml_model.meta import (
+    ClassDefinition,
+    ElementName,
+    SlotDefinition,
+)
 
 
 def remove_duplicates(lst):
@@ -14,3 +23,59 @@ def write_to_file(file_path, data, mode="w", encoding="utf-8"):
 def convert_to_snake_case(str):
     str = re.sub(r"(?<=[a-z])(?=[A-Z])|[^a-zA-Z]", " ", str).strip().replace(" ", "_")
     return "".join(str.lower())
+
+
+@lru_cache(None)
+def get_range_associated_slots(
+    schemaview: SchemaView, range_class: ClassDefinition
+) -> Tuple[Union[SlotDefinition, None], Union[SlotDefinition, None], Union[List[SlotDefinition], None]]:
+    if isinstance(range_class, ElementName):
+        range_class = schemaview.get_class(range_class)
+    if range_class is None:
+        return None, None, None
+
+    range_class_id_slot = schemaview.get_identifier_slot(range_class.name, use_key=True)
+    if range_class_id_slot is None:
+        return None, None, None
+
+    non_id_slots = [s for s in schemaview.class_induced_slots(range_class.name) if s.name != range_class_id_slot.name]
+    non_id_required_slots = [s for s in non_id_slots if s.required]
+
+    # Some lists of objects can be serialized as SimpleDicts.
+    # A SimpleDict is serialized as simple key-value pairs where the value is atomic.
+    # The key must be declared as a key, and the value must satisfy one of the following conditions:
+    # 1. The value slot is the only other slot in the object other than the key
+    # 2. The value slot is explicitly annotated as a simple_dict_value
+    # 3. The value slot is the only non-key that is required
+    # See also: https://github.com/linkml/linkml/issues/1250
+    range_simple_dict_value_slot = None
+    if len(non_id_slots) == 1:
+        range_simple_dict_value_slot = non_id_slots[0]
+    elif len(non_id_slots) > 1:
+        candidate_non_id_slots = []
+        for non_id_slot in non_id_slots:
+            if isinstance(non_id_slot.annotations, dict):
+                is_simple_dict_value = non_id_slot.annotations.get("simple_dict_value", False)
+            else:
+                is_simple_dict_value = getattr(non_id_slot.annotations, "simple_dict_value", False)
+            if is_simple_dict_value:
+                candidate_non_id_slots.append(non_id_slot)
+        if len(candidate_non_id_slots) == 1:
+            range_simple_dict_value_slot = candidate_non_id_slots[0]
+        else:
+            candidate_non_id_slots = []
+            for non_id_slot in non_id_slots:
+                if non_id_slot.required:
+                    candidate_non_id_slots.append(non_id_slot)
+            if len(candidate_non_id_slots) == 1:
+                range_simple_dict_value_slot = candidate_non_id_slots[0]
+
+    return range_class_id_slot, range_simple_dict_value_slot, non_id_required_slots
+
+
+def is_simple_dict(schemaview: SchemaView, slot: SlotDefinition) -> bool:
+    if not slot.multivalued or not slot.inlined or slot.inlined_as_list:
+        return False
+    else:
+        _, range_simple_dict_value_slot, _ = get_range_associated_slots(schemaview, slot.range)
+        return range_simple_dict_value_slot is not None

linkml/utils/validation.py

@@ -7,6 +7,7 @@ from linkml_runtime.linkml_model import SchemaDefinition
 from linkml_runtime.utils.yamlutils import YAMLRoot
 
 from linkml.generators.jsonschemagen import JsonSchemaGenerator
+from linkml.utils.deprecation import deprecation_warning
 
 
 def _as_dict(inst):
@@ -16,7 +17,6 @@ def _as_dict(inst):
     return inst_dict
 
 
-# Deprecated: use validators module
 def validate_object(
     data: YAMLRoot,
     schema: Union[str, TextIO, SchemaDefinition],
@@ -32,6 +32,7 @@ def validate_object(
     :param closed:
     :return:
     """
+    deprecation_warning("validators")
     if target_class is None:
         target_class = type(data)
     inst_dict = _as_dict(data)

linkml/validator/__init__.py

@@ -60,7 +60,7 @@ def validate(
         otherwise it should be a ``SchemaDefinition`` instance.
     :param target_class: Name of the class within the schema to validate
         against. If ``None``, the class will be inferred from the schema by
-        looked for a class with ``tree_root: true``. Defaults to ``None``.
+        looking for a class with ``tree_root: true``. Defaults to ``None``.
     :param strict: If ``True``, validation will stop after the first validation
         error is found, Otherwise all validation problems will be reported.
         Defaults to ``False``.
@@ -99,7 +99,7 @@ def validate_file(
         otherwise it should be a ``SchemaDefinition`` instance.
     :param target_class: Name of the class within the schema to validate
         against. If ``None``, the class will be inferred from the schema by
-        looked for a class with ``tree_root: true``. Defaults to ``None``.
+        looking for a class with ``tree_root: true``. Defaults to ``None``.
     :param strict: If ``True``, validation will stop after the first validation
         error is found, Otherwise all validation problems will be reported.
         Defaults to ``False``.

linkml/validator/plugins/jsonschema_validation_plugin.py

@@ -55,4 +55,5 @@ class JsonschemaValidationPlugin(ValidationPlugin):
                 instantiates=context.target_class,
                 message=f"{best_error.message} in /{'/'.join(str(p) for p in best_error.absolute_path)}",
                 context=error_context,
+                source=best_error,
             )

linkml/validator/report.py

@@ -1,7 +1,7 @@
 from enum import Enum
 from typing import Any, List, Optional
 
-from pydantic import BaseModel
+from pydantic import BaseModel, Field
 
 
 class Severity(str, Enum):
@@ -30,6 +30,9 @@ class ValidationResult(BaseModel):
     instantiates: Optional[str] = None
     context: List[str] = []
 
+    # The source object that caused this validation result
+    source: Any = Field(None, description="The source of this validation result", exclude=True)
+
 
 class ValidationReport(BaseModel):
     """

linkml/validator/validator.py

@@ -48,7 +48,7 @@ class Validator:
         :param instance: The instance to validate
         :param target_class: Name of the class within the schema to validate
             against. If ``None``, the class will be inferred from the schema by
-            looked for a class with ``tree_root: true``. Defaults to ``None``.
+            looking for a class with ``tree_root: true``. Defaults to ``None``.
         :return: A validation report
         :rtype: ValidationReport
         """
@@ -61,7 +61,7 @@ class Validator:
             which provides the instances to validate
         :param target_class: Name of the class within the schema to validate
             against. If ``None``, the class will be inferred from the schema by
-            looked for a class with ``tree_root: true``. Defaults to ``None``.
+            looking for a class with ``tree_root: true``. Defaults to ``None``.
         :return: A validation report
         :rtype: ValidationReport
         """
@@ -73,7 +73,7 @@ class Validator:
         :param instance: The instance to validate
         :param target_class: Name of the class within the schema to validate
             against. If ``None``, the class will be inferred from the schema by
-            looked for a class with ``tree_root: true``. Defaults to ``None``.
+            looking for a class with ``tree_root: true``. Defaults to ``None``.
         :return: Iterator over validation results
         :rtype: Iterator[ValidationResult]
         """
@@ -89,7 +89,7 @@ class Validator:
             which provides the instances to validate
         :param target_class: Name of the class within the schema to validate
             against. If ``None``, the class will be inferred from the schema by
-            looked for a class with ``tree_root: true``. Defaults to ``None``.
+            looking for a class with ``tree_root: true``. Defaults to ``None``.
         :return: Iterator over validation results
         :rtype: Iterator[ValidationResult]
         """

linkml/validators/jsonschemavalidator.py

@@ -18,6 +18,7 @@ from linkml.generators.jsonschemagen import JsonSchemaGenerator
 from linkml.generators.pythongen import PythonGenerator
 from linkml.utils import datautils
 from linkml.utils.datavalidator import DataValidator
+from linkml.utils.deprecation import deprecation_warning
 
 logger = logging.getLogger(__name__)
 
@@ -29,6 +30,7 @@ class HashableSchemaDefinition(SchemaDefinition):
 
 @lru_cache(maxsize=None)
 def _generate_jsonschema(schema, top_class, closed, include_range_class_descendants):
+    deprecation_warning("validators")
     logger.debug("Generating JSON Schema")
     not_closed = not closed
     return JsonSchemaGenerator(
@@ -42,6 +44,7 @@ def _generate_jsonschema(schema, top_class, closed, include_range_class_descenda
 
 class JsonSchemaDataValidatorError(Exception):
     def __init__(self, validation_messages: List[str]) -> None:
+        deprecation_warning("validators")
         super().__init__("\n".join(validation_messages))
         self.validation_messages = validation_messages
 
@@ -56,6 +59,7 @@ class JsonSchemaDataValidator(DataValidator):
     _hashable_schema: Union[str, HashableSchemaDefinition] = field(init=False, repr=False)
 
     def __setattr__(self, __name: str, __value: Any) -> None:
+        deprecation_warning("validators")
         if __name == "schema":
             if isinstance(__value, SchemaDefinition):
                 self._hashable_schema = HashableSchemaDefinition(**asdict(__value))
@@ -65,6 +69,7 @@ class JsonSchemaDataValidator(DataValidator):
 
     def validate_file(self, input: str, format: str = "json", **kwargs):
         # return self.validate_object(obj)
+        deprecation_warning("validators")
         pass
 
     def validate_object(self, data: YAMLRoot, target_class: Type[YAMLRoot] = None, closed: bool = True) -> None:
@@ -76,6 +81,7 @@ class JsonSchemaDataValidator(DataValidator):
         :param closed:
         :return:
         """
+        deprecation_warning("validators")
         if target_class is None:
             target_class = type(data)
         inst_dict = as_simple_dict(data)
@@ -90,6 +96,7 @@ class JsonSchemaDataValidator(DataValidator):
         :param closed:
         :return:
         """
+        deprecation_warning("validators")
         results = list(self.iter_validate_dict(data, target_class, closed))
         if results:
             raise JsonSchemaDataValidatorError(results)
@@ -97,6 +104,7 @@ class JsonSchemaDataValidator(DataValidator):
     def iter_validate_dict(
         self, data: dict, target_class_name: ClassDefinitionName = None, closed: bool = True
     ) -> Iterable[str]:
+        deprecation_warning("validators")
         if self.schema is None:
             raise ValueError("schema object must be set")
         if target_class_name is None:
@@ -159,6 +167,8 @@ def cli(
     """
     Validates instance data
     """
+    deprecation_warning("validators")
+
     if module is None:
         if schema is None:
             raise Exception("must pass one of module OR schema")

linkml/validators/sparqlvalidator.py

@@ -14,11 +14,13 @@ from linkml.generators.sparqlgen import SparqlGenerator
 from linkml.reporting import CheckResult, Report
 from linkml.utils.datautils import _get_format, dumpers_loaders, get_dumper
 from linkml.utils.datavalidator import DataValidator
+from linkml.utils.deprecation import deprecation_warning
 
 logger = logging.getLogger(__name__)
 
 
 def sparqljson2dict(row: dict):
+    deprecation_warning("validators")
     return {k: v["value"] for k, v in row.items()}
 
 
@@ -37,11 +39,13 @@ class SparqlDataValidator(DataValidator):
     queries: dict = None
 
     def validate_file(self, input: str, format: str = "turtle", **kwargs):
+        deprecation_warning("validators")
         g = Graph()
         g.parse(input, format=format)
         return self.validate_graph(g, **kwargs)
 
     def validate_graph(self, g: Graph, **kwargs):
+        deprecation_warning("validators")
         if self.queries is None:
             self.queries = SparqlGenerator(self.schema, **kwargs).queries
         invalid = []
@@ -61,6 +65,7 @@ class SparqlDataValidator(DataValidator):
         return invalid
 
     def validate_endpoint(self, url: str, **kwargs):
+        deprecation_warning("validators")
         if self.queries is None:
             self.queries = SparqlGenerator(self.schema, **kwargs).queries
         invalid = []
@@ -81,6 +86,7 @@ class SparqlDataValidator(DataValidator):
         return report
 
     def load_schema(self, schema: Union[str, SchemaDefinition]):
+        deprecation_warning("validators")
         self.schemaview = SchemaView(schema)
         self.schema = self.schemaview.schema
         # self.schema = YAMLGenerator(schema).schema
@@ -124,6 +130,7 @@ def cli(
 
         linkml-sparql-validate -U http://sparql.hegroup.org/sparql -s tests/test_validation/input/omo.yaml
     """
+    deprecation_warning("validators")
     validator = SparqlDataValidator(schema)
     if endpoint_url is not None:
         results = validator.validate_endpoint(endpoint_url, limit=limit, named_graphs=named_graph)

linkml/workspaces/example_runner.py

@@ -1,6 +1,4 @@
-"""Iterate through all examples in a folder testing them for validity.
-
-"""
+"""Iterate through all examples in a folder testing them for validity."""
 
 import glob
 import json
@@ -22,6 +20,7 @@ from linkml_runtime.utils.formatutils import camelcase
 
 from linkml._version import __version__
 from linkml.generators.pythongen import PythonGenerator
+from linkml.utils.helpers import get_range_associated_slots
 from linkml.validator import Validator, _get_default_validator
 
 logger = logging.getLogger(__name__)
@@ -244,10 +243,28 @@ class ExampleRunner:
                     raise ValueError(f"Cannot find unique class for URI {target_class}; got: {target_classes}")
                 target_class = target_classes[0]
             new_dict_obj = {}
+
             for k, v in dict_obj.items():
                 if v is not None:
                     islot = sv.induced_slot(k, target_class)
-                    v2 = self._load_from_dict(v, target_class=islot.range)
+                    # if slot is a dictionary, repeat key in dictionary value object
+                    if islot.multivalued and islot.inlined and not islot.inlined_as_list:
+                        (range_id_slot, range_simple_dict_value_slot, _) = get_range_associated_slots(
+                            self.schemaview, islot.range
+                        )
+                        v_as_list = []
+                        for ik, iv in v.items():
+                            # simple dictionaries can be simply created
+                            if range_simple_dict_value_slot is not None:
+                                value = {range_id_slot.name: ik, range_simple_dict_value_slot.name: iv}
+                            # other dictionaries => simply add the identifier to the dictionary
+                            else:
+                                value = iv
+                                value[range_id_slot.name] = ik
+                            v_as_list.append(value)
+                        v2 = self._load_from_dict(v_as_list, target_class=islot.range)
+                    else:
+                        v2 = self._load_from_dict(v, target_class=islot.range)
                     new_dict_obj[k] = v2
             py_target_class = getattr(self.python_module, camelcase(target_class))
             return py_target_class(**new_dict_obj)

{linkml-1.8.5.dist-info → linkml-1.8.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: linkml
-Version: 1.8.5
+Version: 1.8.7
 Summary: Linked Open Data Modeling Language
 Home-page: https://linkml.io/linkml/
 Keywords: schema,linked data,data modeling,rdf,owl,biolink
@@ -53,7 +53,7 @@ Requires-Dist: pyyaml
 Requires-Dist: rdflib (>=6.0.0)
 Requires-Dist: requests (>=2.22)
 Requires-Dist: sqlalchemy (>=1.4.31)
-Requires-Dist: typing-extensions (>=4.4.0) ; python_version < "3.9"
+Requires-Dist: typing-extensions (>=4.6.0) ; python_version < "3.12"
 Requires-Dist: watchdog (>=0.9.0)
 Project-URL: Documentation, https://linkml.io/linkml/
 Project-URL: Repository, https://github.com/linkml/linkml

{linkml-1.8.5.dist-info → linkml-1.8.7.dist-info}/RECORD

@@ -2,18 +2,19 @@ linkml/__init__.py,sha256=0REu65rXiOk3F1CYLzq60HiSZ2DfFySfGS6QFljZ01s,3663
 linkml/_version.py,sha256=udxv6OEqcE89DTVMYPtetXYg8IA8Sgc6yW26-6f8C3M,310
 linkml/cli/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/cli/__main__.py,sha256=oPa7Fl2DQP40UivpIWNRr1CgwT2SQM0rhE478155zBY,80
-linkml/cli/main.py,sha256=83lyx36tcy95StDRtN7BmwNFCPt4As1wb0wbC3YwHKg,5386
+linkml/cli/main.py,sha256=4X0OXU53nqkS18ViOIRLH8bx2eDVzgisWixhx9bhgPQ,5484
 linkml/generators/PythonGenNotes.md,sha256=wb9BPLLhF6378OKLbwSBAwmniLpwrcT5_bbfCHfLme8,51006
 linkml/generators/README.md,sha256=RMzT8EblC_GEdPy5WyfXHDBXlFI6k6mz3Cx2sdpcyWI,4438
 linkml/generators/__init__.py,sha256=2qSOnibL6KtzBW3KNqVX1gx1LQttrXlOPbbVDLLV2go,1587
 linkml/generators/common/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-linkml/generators/common/build.py,sha256=hXf2gf1ox2hiR-D6N-qXt5w5QkISLlo1A-_GurY3yHo,2897
+linkml/generators/common/build.py,sha256=AR1jnMzE7WXBlLCX1qdgilj8qmBHRWFwsNx9nw2RBzQ,2928
 linkml/generators/common/ifabsent_processor.py,sha256=hVm6mKq8qciL5Fa53TAtGO8ZJnbRuktvJnaA6-HutTk,13533
-linkml/generators/common/lifecycle.py,sha256=UOJXlIyWQkvsn0Dao9_ZDzlamJtiINyVJQ6SRj66L9s,4910
+linkml/generators/common/lifecycle.py,sha256=We0h_GeyL1biDaXCsd0ENWqGMpgtDbWOMCk-1-JJTD4,5514
 linkml/generators/common/naming.py,sha256=AsLJ7e87TU_SnAM0Sy7q9HZc-qXvyIuqHt1CoHV-Y3Y,5089
 linkml/generators/common/template.py,sha256=bjcSNiC85MYl9oGhk0ZpqwZpRxxy_NqxG8XBV-TXXDY,3338
 linkml/generators/common/type_designators.py,sha256=lgVcIRJJ-yCvVGeP9U_gQZpm77UmJBQo9Bh3lGJITno,1956
 linkml/generators/csvgen.py,sha256=O20K3IuDxomGJAyNFJmm1_HbPyl6xUK0l-aKY0A3KcM,3253
+linkml/generators/dbmlgen.py,sha256=IrtY65iFdXg4wHBP9vHQeV20HUOUB1XlggPtmt_YvGM,5466
 linkml/generators/docgen/class.md.jinja2,sha256=-JmjYHgYOaaBYd5r-Tr5dkk0CLM_lX0kHdocPQtRsjU,3504
 linkml/generators/docgen/class_diagram.md.jinja2,sha256=gzskx4hOpU_s6BqOXdYZ9DwKxuClnsEgDzPurm30PeY,3469
 linkml/generators/docgen/common_metadata.md.jinja2,sha256=gy9J8rghBfKDKimwtHj_XuHY4PJRRYHLXVlBHqWrUzU,1604
@@ -26,7 +27,7 @@ linkml/generators/docgen/subset.md.jinja2,sha256=EPln_fjlhlkmwEGEp2iPX-9Xm2vVodP
 linkml/generators/docgen/type.md.jinja2,sha256=QmCMJZrFwP33eHkggBVtypbyrxTb-XZn9vHOYojVaYk,635
 linkml/generators/docgen.py,sha256=iDSu2LsZ7MStrzXdxFwK-oBlVevq2MwBc1n5WzHzTyw,38996
 linkml/generators/dotgen.py,sha256=vjHveFtKBItHRkowi1I4FHffcn4u4wLpBydYgVxB-vE,5028
-linkml/generators/erdiagramgen.py,sha256=5_VEPvRL0I819wCjk7T5hWffdBPc_qw3XpQdOYpO7uE,11357
+linkml/generators/erdiagramgen.py,sha256=BteqzyVgKeUXfdCq3VHiiJMbuMrsn_D08IoNq8QMBcY,11462
 linkml/generators/excelgen.py,sha256=MQRRm1wDbg7auUQH9tGb5aRyrp-e4gjXsY10aoLb9LI,7708
 linkml/generators/golanggen.py,sha256=Qx1GZRIrKn8jNoO-8fJMjkrwV9ZLwR4NwYBW5kGGp9c,5840
 linkml/generators/golrgen.py,sha256=JB92VDhTuwyaOyxHxB4goIsjZbq4NMf36ESprC3GeBs,3454
@@ -34,27 +35,28 @@ linkml/generators/graphqlgen.py,sha256=belU4f89vBHoHBipaMkHiE_ND42IV7L0Zp4akL9sQ
 linkml/generators/javagen/example_template.java.jinja2,sha256=ec4CVTv_0zS7V5Y-1E6H4lRraya10gfX7BEMBlu38X4,444
 linkml/generators/javagen/java_record_template.jinja2,sha256=OQZffLSy_xR3FIhQMltvrYyVeut7l2Q-tzK7AOiVmWs,1729
 linkml/generators/javagen.py,sha256=BTAXgvOOvRa3AOfaaiVFyuyaqg4XFR_JbO6_7tT_AnQ,5335
-linkml/generators/jsonldcontextgen.py,sha256=J-9QF7doco3-hYReiik67PjiaF_UudrFEiVsbnJFCJg,8666
-linkml/generators/jsonldgen.py,sha256=9ru1rb4_u7t_Rp8ILQSmDIsk_evrDL_OeilnQUsu338,7770
-linkml/generators/jsonschemagen.py,sha256=1k00W4I4paKHKZnmcWcMEoAel1VZRHa2rVgcOZW3kZU,30424
+linkml/generators/jsonldcontextgen.py,sha256=LpuTtzU4H6BH_615E4Fbt0QBCEopvqRMVOMwDva1kGk,8958
+linkml/generators/jsonldgen.py,sha256=d94TEPu9zeHDZqPU6cSaiQiJnv0kc_AXkXahi1xOBZ8,7789
+linkml/generators/jsonschemagen.py,sha256=8luthDkItlZ5bU4Lxt9b7tZx0HTIP4FZEZ5C2nwMMqA,30867
 linkml/generators/legacy/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-linkml/generators/linkmlgen.py,sha256=g1D8B6MBxcG6b9aYCUESp7nDZPmjedCs8rmGm_0GLnE,3484
+linkml/generators/linkmlgen.py,sha256=7GbD-ZErCblapbl_CukfHvFYOTbhgWiTIyg6O5BJSO0,3915
 linkml/generators/markdowngen.py,sha256=0gjMPJ0Ycm9se4Y4cyqjbTntGYqRRZu4RL-9Qf5n4lk,34464
+linkml/generators/mermaidclassdiagramgen.py,sha256=NzRDXmy2qMOUHmvrcd7LrKZiVR1J___pLRhQpGstGyA,4946
 linkml/generators/namespacegen.py,sha256=C4p9LSwsnDqf6sv-wG5l0VQniWFJ1HA1hRXJBDOg3pM,6467
 linkml/generators/oocodegen.py,sha256=aBJgy-S-8FL5cW9p4hf986iSTxXwvkM7ZajKlari4us,7820
-linkml/generators/owlgen.py,sha256=X00YGlx8scBftKY422l6uwnvqiQpNd2DI4cDC-G0kW8,58204
-linkml/generators/plantumlgen.py,sha256=ScTpXZe2Vjs2O6DeRJo-nr-p13lWSAtMZl6gu9jQYTk,15478
+linkml/generators/owlgen.py,sha256=FxfEpJSybw11qEjcE3ozVvFuu_eKp1qhQmFOK566CGg,58086
+linkml/generators/plantumlgen.py,sha256=G12fBFh8qqHuXTtGEndcQJzAtarWJFE7qcUaMXLTJrE,15614
 linkml/generators/prefixmapgen.py,sha256=oISFtSt_s5OWx65tYasWk0bUJIDIU1MjnsWqfBE7ZQA,4257
 linkml/generators/projectgen.py,sha256=XQdOjAJroroT2JNNPbrUauv2DTJ3tfJoFNYGSLKky24,9791
 linkml/generators/protogen.py,sha256=a4KUyKj525tuE2YenEJQ_IkbNKnnhVH_N-qTEmMBVY4,2524
 linkml/generators/pydanticgen/__init__.py,sha256=5SUFNcrh-6MLfMqptR6wPsR2v1Gyrl3wii-yu6kdnQM,700
-linkml/generators/pydanticgen/array.py,sha256=eV5zWd4dJl7Uj-xQyijibACily4IgWSEQRH8Wmga9gc,27876
+linkml/generators/pydanticgen/array.py,sha256=ELAH-KyJwDX69q3ANlyyFJqvEpU30XSY1Ztu2sh4M0E,25956
 linkml/generators/pydanticgen/black.py,sha256=BaJ7b-kMUbIN_cKRT3yCaMEbFwxzj1_U7w4fKQnkL44,723
 linkml/generators/pydanticgen/build.py,sha256=xWNnxaNz0LqfNpgUuaUeVdvmXyFASwv5QED3bEaUVaM,4093
 linkml/generators/pydanticgen/includes.py,sha256=kDAwonKbhTFzrFa2TrmTYuOSHXuzDy5WHgBaI5nVY6c,504
 linkml/generators/pydanticgen/pydanticgen.py,sha256=IEmSPr9zu1dkgIMFvVKDswokhQvM_weXdmVNQ3l3eNQ,49938
 linkml/generators/pydanticgen/template.py,sha256=wjUMiTay_EFh8zp5LfytBsgZJGlKjV96PVnBgI21KVc,24886
-linkml/generators/pydanticgen/templates/attribute.py.jinja,sha256=uMyVKpO5uQkAFlIvIBwA6FFZl_BSIotfwCorrSwMA3Q,873
+linkml/generators/pydanticgen/templates/attribute.py.jinja,sha256=4s4eUZEqiTxHV2pU8beF761xut4Q-bXwZXF0XBlnXAs,881
 linkml/generators/pydanticgen/templates/base_model.py.jinja,sha256=6KRQ1ZVHh1uwZnYL3qxBnyit8_DNE7D-4l2-1wsRsG0,406
 linkml/generators/pydanticgen/templates/class.py.jinja,sha256=GqR2t5y0vLmvUpT2vyP5VX42PO9AkAnGE-U2RZPa9AI,690
 linkml/generators/pydanticgen/templates/conditional_import.py.jinja,sha256=YheknDrxvepiJUzeItSL5aSbAkCdR1k0a6m6aTA4qNM,240
@@ -69,9 +71,9 @@ linkml/generators/pythongen.py,sha256=-W8ZgvgDP-Hm4Q9weQiB7xtXMJyadtyfZ6BHC1CmCl
 linkml/generators/rdfgen.py,sha256=OT8oS8MPUVf5UK3OKvRWgAh9iQiWwdyWJSA69PncOw4,2969
 linkml/generators/shacl/__init__.py,sha256=KgMOyESGTdKk2Vhx9uuUYgEJPuJQ-iT1vDQVIMoiXCM,58
 linkml/generators/shacl/shacl_data_type.py,sha256=gX3Y2KyTVPwMyef0cJMTEpU9h0oH-H0ThVDORdNW170,1828
-linkml/generators/shacl/shacl_ifabsent_processor.py,sha256=hbgt5UtVHo_z_JOLkg6ltGRdVuiv65b2PA3x1Oy4ssQ,4269
-linkml/generators/shaclgen.py,sha256=6MKUgvsQ8GGG9j8w8EUqwhMB4VhV2nVURYRRcg2FBfw,14330
-linkml/generators/shexgen.py,sha256=-GFdapDEAUXAjsXdTI7ZlS39YfuvaxfzPkdqUNM19qI,9941
+linkml/generators/shacl/shacl_ifabsent_processor.py,sha256=usmqdCvAPiivHzXWkNzW0G_KOaAG8bHdTCkEH2pI0b4,4364
+linkml/generators/shaclgen.py,sha256=RcGoo4j-NJUavbdUo1gnYo4mXTivaYb8o-oIfaUrA_g,14833
+linkml/generators/shexgen.py,sha256=cr4x4ORZlre6XlToWKho5F4XjFwOlzR1SpOpbeOvRA4,9939
 linkml/generators/sparqlgen.py,sha256=2DaFrFIeMI7QQfiPn79J8ERILlkJALrabDnKK7usDJQ,6188
 linkml/generators/sqlalchemy/__init__.py,sha256=mb9AC1rIFkSiNZhhG0TAk45ol9PjS1XvsrvCjgfVUpQ,249
 linkml/generators/sqlalchemy/sqlalchemy_declarative_template.py,sha256=X_Ws1NUBikMI5HuNgEhl_PIeWM-B-c2B0W9KUBH4QTg,2542
@@ -80,10 +82,10 @@ linkml/generators/sqlalchemygen.py,sha256=MYzEkg8BAgFChiRNqOZK9aMqH-aNGa6-CnpZdb
 linkml/generators/sqltablegen.py,sha256=BaWAuvwVHsXVt85GYxzH5_UL3ZeqRI9SojlvMmh4KkE,12395
 linkml/generators/sssomgen.py,sha256=zrZy0WL9fF5bk-XAcB-MZYZkhHhqVRHt2rGBUtfqnLY,6891
 linkml/generators/string_template.md,sha256=kRcfic6entgIaJdpSg6GF3jcjC9wbKsCVM6wVT2qipc,1788
-linkml/generators/summarygen.py,sha256=C9r34928QtVMaXTbdch-mRPB5L0jDTGmTnVmtrKrR-0,3083
+linkml/generators/summarygen.py,sha256=abNd39Z-Kn3FX2fjXLeCqvXvFunpqM7UFPimtiCB2p0,3081
 linkml/generators/terminusdbgen.py,sha256=ItJ-HTMkkX22Ex1-UjJZmtEtE2fn6UdjAxDtn20RXV8,4713
-linkml/generators/typescriptgen.py,sha256=3738AygrfEnyp0eDzpwbO4x4udLHDXX1Ev4MVM2zBwY,8814
-linkml/generators/yamlgen.py,sha256=38zdh5T4tObFhCHgbUbKbc0UuFh1TmmsWBkWM9gcvsI,1625
+linkml/generators/typescriptgen.py,sha256=xxi7LzWNjbRFjjC6AR7NO4tfXx5CVCWNJ1urSiu5FNo,8876
+linkml/generators/yamlgen.py,sha256=PWexYoR3wHRoAUk6zK67fRYjBF6sAmX_iGlOAT0PJq0,1623
 linkml/generators/yumlgen.py,sha256=Bg1MGlhCCQoswB19mFKh8xB0UcL9MQGHlUrAVGZSWkc,12208
 linkml/linter/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/linter/cli.py,sha256=tXJ3vwjohCnj4EApEJXvXUSI3NLJ3fI3u6tJVxbgLQg,4505
@@ -100,24 +102,24 @@ linkml/linter/formatters/markdown_formatter.py,sha256=sumF2MNJYL5oipLwCftCr3AiaC
 linkml/linter/formatters/terminal_formatter.py,sha256=xmNwlRieVCssRt3fpnNP5WWw_YXGmaBsbxFoMWufy5M,2085
 linkml/linter/formatters/tsv_formatter.py,sha256=1VW-1Tv16mwhIDpHdExYpJJR3z42K5_XK2C-4mmYYdE,871
 linkml/linter/linter.py,sha256=ETx1C8IbXnrCDWwpBxAz0ahY4ROYcl-pQhwp5RFjzJ8,5145
-linkml/linter/rules.py,sha256=Eg_-lIX1KPsCp3PHdPcBiHmSS5qAVZkHbw5LURfkfXk,11481
+linkml/linter/rules.py,sha256=NFCSBnEU_D0V9tqYbJvzhJlxhtyNuyqRzt4nrTc7xeA,11621
 linkml/reporting/__init__.py,sha256=Jo0V_nyEcnWhMukMW-bqW9dlbgCfaRlWm3CO-XzgU84,92
 linkml/reporting/model.py,sha256=-10yNfk8wuRC48ZI-akrWvtlJ9a6RYWET2TzlZV3XXo,8622
 linkml/transformers/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-linkml/transformers/logical_model_transformer.py,sha256=hWc5uF1TYU9_qVZAKm2UtQ6ICoeWLaRCI5OUWmEy94k,29835
+linkml/transformers/logical_model_transformer.py,sha256=5p6y41bTt3nJULznqINb8BJqPeCYgHGPuv8qQRycJ_E,29923
 linkml/transformers/model_transformer.py,sha256=tK_MpRDI-q2qfe8KHT6qJHP8ZruKjYx1FcM-Fnjse-E,678
 linkml/transformers/relmodel_transformer.py,sha256=2AwLVqto1to_9IaTjicweFVIPa8dcNPKK0EJWdHfWMo,19675
 linkml/transformers/schema_renamer.py,sha256=DYRbgL9j41M9FdbHYLY3u4YIdDM98laD3cv_lHcgWHQ,5275
 linkml/utils/__init__.py,sha256=Pkyv-Gfb8QoJdInRdJuuUz1Igfe0sT9t8Gv3V_fyTXc,92
 linkml/utils/cli_utils.py,sha256=MdVbox1qr6kDUHUCWAmFhV-D6ebs_nn8vVwB8KDQfew,742
-linkml/utils/converter.py,sha256=ZGRZXsPezhMmQaF-BiBsQON--TVQLi64tEdtrN9q2PA,6334
+linkml/utils/converter.py,sha256=-v6eiXjjn3NqmZCfnzfkyDpcA5jha3BFxUuSlLmgK6Y,7126
 linkml/utils/datautils.py,sha256=QlbzwXykh5Fphfe5KxPo6_ekXfniLbHiEGJtLWjUrvY,3742
 linkml/utils/datavalidator.py,sha256=kBdWaVi8IZT1bOwEJgJYx-wZAb_PTBObB9nHpYORfKA,472
-linkml/utils/deprecation.py,sha256=onhB82qjIkKzyUOTO9WDqN6QF3I2cJoyBrbm66vHmgM,8088
+linkml/utils/deprecation.py,sha256=SlAS6L27I65fkaSape2uC49CFgeOTGzUwwERZMp134E,8484
 linkml/utils/exceptions.py,sha256=3S6lf5WAUgVvjPRaES597_YjUjbbJ5KqjKjpjcaRLoU,217
 linkml/utils/execute_tutorial.py,sha256=X2sdb4fBBnBmNKg9k5_fhWeY9DXCbYEb4NXUCPv4TJ0,7057
-linkml/utils/generator.py,sha256=04GLUdwxz5Q4K_5ICBWOlhRapCf9yOan2H5C3zUrOE4,39132
-linkml/utils/helpers.py,sha256=yR8n4zFA5wPcYC7xzRuNF3wO16vG80v6j7DM3qTNmIc,447
+linkml/utils/generator.py,sha256=w90ASqaXZnu4aezf8YpFfH7khU5HHvJa5Qqfk50Pd6c,39572
+linkml/utils/helpers.py,sha256=IoLaG8XE8WOorOFQF-XKfaWKSEoVDShC2E9Rd1596uo,3364
 linkml/utils/logictools.py,sha256=BGtcoqr_Rsu08Ywa6lNiL881uZzQmNWk1p4FEIVKYe0,23641
 linkml/utils/mergeutils.py,sha256=FdcSiYUmPkxxwnEv_43SR3BN6lCUeEkNndRpxJQWE2c,9080
 linkml/utils/rawloader.py,sha256=nUB8Gfn8yEVwyo6bx0TtB2mBGkilC-fybi0xvQ73Gks,4417
@@ -127,8 +129,8 @@ linkml/utils/schemaloader.py,sha256=wiqKHc28ga_qLuIDGS9BQhwhXYu1ZSUqhOebmUF1NGs,
 linkml/utils/schemasynopsis.py,sha256=j7sNt6j-E3rmf-1qEo351Kth2kltt6crQV-dxJAGCUE,18414
 linkml/utils/sqlutils.py,sha256=DkeNyVlHcFlKSHgnOmpO47JSQssqRhA9ys_0ZXkYGz4,17120
 linkml/utils/typereferences.py,sha256=8Yfuz9-HAwOPoJLbIcO_sY9zf32hvPRzGeSOzECfMWA,2232
-linkml/utils/validation.py,sha256=eLw1-d8x3N1V14bSc6H_mJJXo59ryKvvUIBcOJ1dVMw,1438
-linkml/validator/__init__.py,sha256=u0CeorIw50Qqwa60-lIFsJXg-sOdfo90hqvLpyvvwo4,4993
+linkml/utils/validation.py,sha256=5vYsb2G21S0j7wkCOvmwK9TNbIGtBNMXHKdRVw1VF-o,1497
+linkml/validator/__init__.py,sha256=rhGXoxyxY3ZMJYwB29HYYzXbwSbMxxE-OmB2ouQIvVw,4995
 linkml/validator/cli.py,sha256=-7_hU787d321z_4pJeUs9dQsM76xpXie9dS-552c7Xs,7683
 linkml/validator/loaders/__init__.py,sha256=FjUqEfBHeT5PEMBEZ9XwpclyQOysr4OCI1M0w_MYPVc,1165
 linkml/validator/loaders/delimited_file_loader.py,sha256=fdh61ZMPTfH29_DM93f5dY0jLP7KQPNh_QAHZppsdNw,2616
@@ -137,24 +139,24 @@ linkml/validator/loaders/loader.py,sha256=YKQXmSZhCymvvb2Dbr4lVCKVDt-lOIayzRD7CW
 linkml/validator/loaders/passthrough_loader.py,sha256=fQvBZqzGnpdwpZio4Mbehmsb6ePpzcacHPuR1QWuhFM,525
 linkml/validator/loaders/yaml_loader.py,sha256=ZsMz-oGDkX9oPEOVcKnFRGhU9q0fKoHcL6BLOkCeB4c,914
 linkml/validator/plugins/__init__.py,sha256=0ifiDqpcXVy4X7OJFm7FMYi1-6E06avNIIk9R0c6nD8,693
-linkml/validator/plugins/jsonschema_validation_plugin.py,sha256=c3OjvLR5m83vppsDfkrS9nMXma_ogUxXpZuM_JIUVM4,2634
+linkml/validator/plugins/jsonschema_validation_plugin.py,sha256=y1DU_oxc-tP5ZRHzI6boSqkesxpEe_6A6Ftuva0Yfuo,2669
 linkml/validator/plugins/pydantic_validation_plugin.py,sha256=gVjdJiGcZ1EuOTcCMWOUS35W3IpMJQHUgjj6lQ3-41E,1990
 linkml/validator/plugins/recommended_slots_plugin.py,sha256=kOdoYQyye47nLA7BjorVmydS84nGpiVy3MoCbPq1Ymo,2308
 linkml/validator/plugins/shacl_validation_plugin.py,sha256=X6h1O54m9P5USvqCvNqELD0YpzXkE6UrmxnV0ukU6E4,3888
 linkml/validator/plugins/validation_plugin.py,sha256=9SMHF8b2bgG9-8351e8bY676e0A4aEBJSXvMjMF5kXg,1548
-linkml/validator/report.py,sha256=LwFpmJ74Cvsi2CuEDhm1a8nn9x1VI3Z98DbkUZVhKMA,898
+linkml/validator/report.py,sha256=haaLq9TiOw00SURa9r9v-WUsstfzn_8yIJ29_Axq0fg,1061
 linkml/validator/validation_context.py,sha256=Pmccq-LQ9iEeLyZhamp3mKjjtwp4ji1hIe5TT05AUT4,2732
-linkml/validator/validator.py,sha256=BFgfKdu9Nad2dc9XTpmz9daQTj_FTcvo6mBq3e8fhJs,5649
+linkml/validator/validator.py,sha256=-RUrgLl7RY8p0zbUOWbw6afh7ZgHjjMJM08heDh58LM,5653
 linkml/validators/__init__.py,sha256=43W3J5NPKhwa3ZFHLRYsJMocwQKWGYCF9Ki9r0ccGbc,202
-linkml/validators/jsonschemavalidator.py,sha256=zGDPKjr13hXHSH8g1KOzo4PXrfM_TTvpwq_jD03aVUw,8005
-linkml/validators/sparqlvalidator.py,sha256=0iq-oFFLV0Juu6pJskpLOlB7AMZwU3VFvoflzW4ohH8,4660
+linkml/validators/jsonschemavalidator.py,sha256=jrUWbQo4Uy85SLtxyu3LPdgcZM6re5-Hw5Yo5qASl4U,8391
+linkml/validators/sparqlvalidator.py,sha256=xlf9hZ-XDeScv2WB9wBg17WKM8HOKmRPowozOzlOLSQ,4961
 linkml/workspaces/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/workspaces/datamodel/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 linkml/workspaces/datamodel/workspaces.py,sha256=4HdkqweGNfMPqnB1_Onc9DcTfkhoagTRcqruh08nRoI,14905
 linkml/workspaces/datamodel/workspaces.yaml,sha256=EjVrwPpeRZqJRjuGyyDRxxFzuv55SiLIXPBRUG6HStU,4233
-linkml/workspaces/example_runner.py,sha256=T7sHQetV6a-dG5Kjuh2L4rHQ6-SPG3Kj1J1nPB_1uoQ,11757
-linkml-1.8.5.dist-info/LICENSE,sha256=kORMoywK6j9_iy0UvLR-a80P1Rvc9AOM4gsKlUNZABg,535
-linkml-1.8.5.dist-info/entry_points.txt,sha256=jvnPJ8UTca4_L-Dh8OdUm5td8I3ZFlKRhMPjqRLtaSg,2084
-linkml-1.8.5.dist-info/METADATA,sha256=9isA7CyNTTGO9A1qH-RvsfN0TH2JGw6ss0RBEwuRa5k,3873
-linkml-1.8.5.dist-info/WHEEL,sha256=vVCvjcmxuUltf8cYhJ0sJMRDLr1XsPuxEId8YDzbyCY,88
-linkml-1.8.5.dist-info/RECORD,,
+linkml/workspaces/example_runner.py,sha256=oViQ5gT8NkFTZbg0dW5LAOSAOAfJK8_QmKdYwzzGhgQ,12919
+linkml-1.8.7.dist-info/LICENSE,sha256=kORMoywK6j9_iy0UvLR-a80P1Rvc9AOM4gsKlUNZABg,535
+linkml-1.8.7.dist-info/WHEEL,sha256=vVCvjcmxuUltf8cYhJ0sJMRDLr1XsPuxEId8YDzbyCY,88
+linkml-1.8.7.dist-info/METADATA,sha256=hubj7dcgTrPQ2ZHmC9Es38FRabdXlkYzrYOqHNp_PS0,3874
+linkml-1.8.7.dist-info/entry_points.txt,sha256=CtvrM-5f3NuMEBTXONEnIo5UUJegBRWJvXUmrYfdIfM,2194
+linkml-1.8.7.dist-info/RECORD,,

{linkml-1.8.5.dist-info → linkml-1.8.7.dist-info}/entry_points.txt

@@ -1,5 +1,6 @@
 [console_scripts]
 gen-csv=linkml.generators.csvgen:cli
+gen-dbml=linkml.generators.dbmlgen:cli
 gen-doc=linkml.generators.docgen:cli
 gen-erdiagram=linkml.generators.erdiagramgen:cli
 gen-excel=linkml.generators.excelgen:cli
@@ -13,6 +14,7 @@ gen-jsonld=linkml.generators.jsonldgen:cli
 gen-jsonld-context=linkml.generators.jsonldcontextgen:cli
 gen-linkml=linkml.generators.linkmlgen:cli
 gen-markdown=linkml.generators.markdowngen:cli
+gen-mermaid-class-diagram=linkml.generators.mermaidclassdiagramgen:cli
 gen-namespaces=linkml.generators.namespacegen:cli
 gen-owl=linkml.generators.owlgen:cli
 gen-plantuml=linkml.generators.plantumlgen:cli