linkml 1.7.8__py3-none-any.whl → 1.7.10__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. linkml/generators/csvgen.py +15 -5
  2. linkml/generators/docgen/class_diagram.md.jinja2 +19 -4
  3. linkml/generators/docgen.py +59 -14
  4. linkml/generators/graphqlgen.py +14 -16
  5. linkml/generators/jsonldcontextgen.py +3 -3
  6. linkml/generators/jsonldgen.py +3 -2
  7. linkml/generators/jsonschemagen.py +9 -0
  8. linkml/generators/markdowngen.py +341 -301
  9. linkml/generators/owlgen.py +87 -20
  10. linkml/generators/plantumlgen.py +9 -8
  11. linkml/generators/prefixmapgen.py +15 -23
  12. linkml/generators/protogen.py +23 -18
  13. linkml/generators/pydanticgen/pydanticgen.py +11 -2
  14. linkml/generators/pythongen.py +2 -5
  15. linkml/generators/rdfgen.py +5 -4
  16. linkml/generators/shaclgen.py +8 -6
  17. linkml/generators/shexgen.py +9 -7
  18. linkml/generators/summarygen.py +8 -2
  19. linkml/generators/terminusdbgen.py +2 -2
  20. linkml/generators/yumlgen.py +2 -2
  21. linkml/utils/__init__.py +3 -0
  22. linkml/utils/deprecation.py +255 -0
  23. linkml/utils/generator.py +78 -56
  24. linkml/validator/cli.py +11 -0
  25. linkml/validator/plugins/jsonschema_validation_plugin.py +2 -0
  26. linkml/validator/report.py +1 -0
  27. linkml/workspaces/example_runner.py +2 -0
  28. {linkml-1.7.8.dist-info → linkml-1.7.10.dist-info}/METADATA +1 -1
  29. {linkml-1.7.8.dist-info → linkml-1.7.10.dist-info}/RECORD +32 -31
  30. {linkml-1.7.8.dist-info → linkml-1.7.10.dist-info}/LICENSE +0 -0
  31. {linkml-1.7.8.dist-info → linkml-1.7.10.dist-info}/WHEEL +0 -0
  32. {linkml-1.7.8.dist-info → linkml-1.7.10.dist-info}/entry_points.txt +0 -0
{linkml-1.7.8.dist-info → linkml-1.7.10.dist-info}/RECORD RENAMED
@@ -5,9 +5,9 @@ linkml/generators/README.md,sha256=RMzT8EblC_GEdPy5WyfXHDBXlFI6k6mz3Cx2sdpcyWI,4
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  linkml/generators/__init__.py,sha256=dQ2EUKy_MctEVEzbC3XzEJL5YmYwjYfsa44mG2zKn7g,1517
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  linkml/generators/common/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml/generators/common/type_designators.py,sha256=lgVcIRJJ-yCvVGeP9U_gQZpm77UmJBQo9Bh3lGJITno,1956
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- linkml/generators/csvgen.py,sha256=X0f4qKXahSDtkzM9Y47rwWqdseP1O6PTZ_WKiOqOrQI,2956
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+ linkml/generators/csvgen.py,sha256=R8VQdWXj43LNf5isJElo3MStsiNBSSF4ywIRS1c3_v0,3243
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  linkml/generators/docgen/class.md.jinja2,sha256=bz5A46HOIPkUVbzPGorg64NNhr66zK0hCCekSfRPErY,3787
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- linkml/generators/docgen/class_diagram.md.jinja2,sha256=lLU_0sQZBttOX5Wiup2oZwrxHuiQtbU9ZgLi66aJvOo,2538
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+ linkml/generators/docgen/class_diagram.md.jinja2,sha256=gzskx4hOpU_s6BqOXdYZ9DwKxuClnsEgDzPurm30PeY,3469
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  linkml/generators/docgen/common_metadata.md.jinja2,sha256=zy8Ua3gDtAAq8VA3e3O3ft9W7eJopVZaq5efP8LU_hU,1321
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  linkml/generators/docgen/enum.md.jinja2,sha256=mXnUrRkleY2bOTEyAZ5c4pcUnqhs6BNa8a-4LVve-eo,1014
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  linkml/generators/docgen/index.md.jinja2,sha256=wXUYTmayPLFltC0vbGE_Mf6m3GkkWav7FOEjCvEpHp4,1466
@@ -16,34 +16,34 @@ linkml/generators/docgen/schema.md.jinja2,sha256=xlENfnzNRYgPT_0tdqNFxgklVM4Qf5B
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  linkml/generators/docgen/slot.md.jinja2,sha256=ZGa-kaNvi5LknvFRIjKQyRpSynr1SlkLrpEmWDNPwDA,3226
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  linkml/generators/docgen/subset.md.jinja2,sha256=EPln_fjlhlkmwEGEp2iPX-9Xm2vVodPZLlRBlYCB_sA,2705
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  linkml/generators/docgen/type.md.jinja2,sha256=QmCMJZrFwP33eHkggBVtypbyrxTb-XZn9vHOYojVaYk,635
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- linkml/generators/docgen.py,sha256=dz7OWxclX306EweVIgC765h3NKtJTRg0TPnqmltWygs,34347
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+ linkml/generators/docgen.py,sha256=QECBmOAiVr-DsUYOLmqapESSB_CiNoiHt_3vjiZCrUs,36396
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  linkml/generators/dotgen.py,sha256=kzp1EYtF8bBqOuycJokDmsvHVDVkkW-J-6-MiUhwJH0,5013
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  linkml/generators/erdiagramgen.py,sha256=xCnxIldDYZ7xnQ-vLaXlH3FH8MH3cxu-E0j8it-lyJE,10153
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  linkml/generators/excelgen.py,sha256=3ILAeIHeYngNpPf3Ad7CXoHOLQ9KSiYcX5HdwHhQeQE,7696
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  linkml/generators/golanggen.py,sha256=1seIQiKq-ASZoHTf7xoPd0zUQ4YCPkxoKnUwgAIttPo,5811
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  linkml/generators/golrgen.py,sha256=OUBYRWicP7G7lrPu1VrxumbVpx3CBJal-o2imyeP05M,3437
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- linkml/generators/graphqlgen.py,sha256=6qZpI0rwg3ypsv_KrLVzXgdsJfR8LNPqgMwaRwzwnDs,2151
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+ linkml/generators/graphqlgen.py,sha256=ClJdD6fVjBI8rsIJ3DIuwdQScAJG0gYYKwS8SrFqVZk,2149
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  linkml/generators/javagen/example_template.java.jinja2,sha256=ec4CVTv_0zS7V5Y-1E6H4lRraya10gfX7BEMBlu38X4,444
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  linkml/generators/javagen/java_record_template.jinja2,sha256=OQZffLSy_xR3FIhQMltvrYyVeut7l2Q-tzK7AOiVmWs,1729
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  linkml/generators/javagen.py,sha256=KxwupMztyCRHcSsbtTnOovuj1WamsAny0mxbYWvTiDs,5324
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- linkml/generators/jsonldcontextgen.py,sha256=N_XWCx_1eS5KcWlzlyl79C-dW0gfe32v886UskD1iTU,8644
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- linkml/generators/jsonldgen.py,sha256=646aQc27CkuxxkDAJHSBcivCDwNAPl7OOT01OBR2AOI,7728
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- linkml/generators/jsonschemagen.py,sha256=XOsYIrpA6BwtAcfh8GNGduIjpuPAsF2f_PQ1mghj_WU,27455
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+ linkml/generators/jsonldcontextgen.py,sha256=y_AE1JF0QS75VDfOAquToClrWGAWb_ltsGN5r-Q20F8,8638
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+ linkml/generators/jsonldgen.py,sha256=FamA0pbbc9U3kEslsjvgJoJXjQ80VzoPbHmClVGPvKE,7757
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+ linkml/generators/jsonschemagen.py,sha256=Oi55uJJmKiSLoZWn_snN5rx51q0DEGqzHv6VgCLfodY,27747
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  linkml/generators/legacy/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml/generators/linkmlgen.py,sha256=1_Kt_7rD42WvCTjq0yaq1Of7jEDZR_uusyzAT-qWMHk,3471
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- linkml/generators/markdowngen.py,sha256=dDMyusNXLvM2raIW-_vd2AQBhDHn0P_rMeDq3QFuacs,32926
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+ linkml/generators/markdowngen.py,sha256=mwydWkrF-WzsTiKwJqqe9NUya5VaTj7ywKqodP85A44,34449
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  linkml/generators/namespacegen.py,sha256=vVcIyM0zlKd7XRvtdzwTwHjG4Pg49801gy4FUmjJlqQ,6450
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  linkml/generators/oocodegen.py,sha256=r73QI08ajbTZTobc9OIG6BMWZft3zdu76vKVR33pyYg,7774
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- linkml/generators/owlgen.py,sha256=NqEvuJOUh4ZEe5tVeVol3SHy7zpCagEhso7Q1GLyIqY,54458
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- linkml/generators/plantumlgen.py,sha256=tk-_XJtBA5EqYJSUTc3bdMdCwqlC-rc9VYO9A2V_HpM,14895
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- linkml/generators/prefixmapgen.py,sha256=L9TccwKNHEguW0ox5qgf_GhIuqauYTI8d4jSjeqdkWo,4720
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+ linkml/generators/owlgen.py,sha256=NHIcL1d79WoeqfiZRj6kRk5aTXcQ6JDNXV_VAtH6Vt0,57554
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+ linkml/generators/plantumlgen.py,sha256=8fQG_IQSn_KdRG-vaQPXHpU9rvRWBggymdu-uK_7Oqo,14936
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+ linkml/generators/prefixmapgen.py,sha256=w8gMCFOI0DmZsNvo9IkbhOqVWqqWYEN6SXnAP3BgFSk,4240
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  linkml/generators/projectgen.py,sha256=OuT_AneoZFNMCn50GllfZafadUHt50u61JcftM2eed4,9750
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- linkml/generators/protogen.py,sha256=5UxThsFDVyDTzzTDh77Z0anx4-tLgz8kQQ-e7ywIqwI,2290
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+ linkml/generators/protogen.py,sha256=i4sEhNdAiFFP12fwfRdype1MX8yU-E5fF7XzkcpBCd0,2512
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  linkml/generators/pydanticgen/__init__.py,sha256=uKGaaQSaeKqinHImXGFE448i-t8Oi0No8suIO76sep8,629
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  linkml/generators/pydanticgen/array.py,sha256=1QWWgz46yVmWkdNauI6Kjkbx3kexp-l210nOILoHJ18,19506
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  linkml/generators/pydanticgen/black.py,sha256=c-Hgaao9hd4nPMU9w0Hmg2j4Wc81IcY0zAfppQPr1cM,721
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  linkml/generators/pydanticgen/build.py,sha256=Ia8qy4C16b-KqO_fw4tGQW_Eo4grCVyX7RsuJ3uRTtk,2681
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- linkml/generators/pydanticgen/pydanticgen.py,sha256=Gnii-UuKc7gyEpaN5XbRyzWp0v1F5eAUVVzMhFGX2rM,29863
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+ linkml/generators/pydanticgen/pydanticgen.py,sha256=7X56SDTEzWt8irqdWOmYUfiBcAlOlfRUbTK3JhYX_JU,30184
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  linkml/generators/pydanticgen/template.py,sha256=fAqRofLm7N94xUqXjkStdmugcxGQfiioGkxdIhLByik,19990
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@@ -54,13 +54,13 @@ linkml/generators/pydanticgen/templates/footer.py.jinja,sha256=WuWGJjkWDQcEPL2bG
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  linkml/generators/pydanticgen/templates/imports.py.jinja,sha256=d1XFna2eOpkH8cgJML3vXwqGcocczvOcrbg6jjd4kP0,945
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- linkml/generators/pythongen.py,sha256=4Tw4Zz5GPvvbvk10zrD1yJFdxY3cvXJYqmFKrms8aUs,52915
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- linkml/generators/rdfgen.py,sha256=fPhTrMzUM6dkg3HllgD6biuRJl8afIfj7ZWu9e56MKo,2973
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+ linkml/generators/pythongen.py,sha256=IVloJ6v7QE7mdHygz0kZmcJ6D61usKffeyBmZjkArng,52879
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+ linkml/generators/rdfgen.py,sha256=eQi3XXjWk6xliTLncQ4G0VYzGCJwCU_FFG-O7tA8DSA,2959
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  linkml/generators/shacl/__init__.py,sha256=O-M-wndKw8rMW-U8X3QCNHal-ErXP6uXZqxiQSa77l4,108
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  linkml/generators/shacl/shacl_data_type.py,sha256=BT3C9tdFyBQnuucPN7YQiFAKEa9yuzy-Q26X6dmOXgo,1827
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- linkml/generators/shaclgen.py,sha256=P3Kf10a0_1MCk4-prai9rrgPRHnQqtgYoXof0VIVyws,8771
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- linkml/generators/shexgen.py,sha256=KzhaL-A4R4peSdhY6nlDWmS-DPfnZMxMzrXhHGnA_Ag,9874
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+ linkml/generators/shaclgen.py,sha256=B9BkCzOQULjpCN10jbvazY6_WEkeVGO8lxEhr6pQ3_A,8849
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+ linkml/generators/shexgen.py,sha256=MhB1HidCREMCJcDGBqutFQ0gWKKz7aSVw-0s-IHUMm4,9930
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  linkml/generators/sparqlgen.py,sha256=c7x8GFChKWprBx4rToSnu9qN8OleWTCenVUdZ8XSTWM,6138
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@@ -69,11 +69,11 @@ linkml/generators/sqlalchemygen.py,sha256=5J9eQhTz7Ug-7WhZPv6zIaAbf7xlLi-0xMequ6
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- linkml/generators/summarygen.py,sha256=crH_Hegd4Z7G7byUtgyXoP2XtG_4iblzZsu_pE4aQrk,2887
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- linkml/generators/terminusdbgen.py,sha256=XX651NgGGoCafA45XomRU0_DhbCyNzFNiigbjcrwXFQ,4627
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+ linkml/generators/summarygen.py,sha256=HUO13GmfFzhAzKtL3nFypR-_I_IFIHqQoE6WMW05mpo,3069
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+ linkml/generators/terminusdbgen.py,sha256=_q5R0OPCkLCHNTQ9AMtCL2hYaO-wReDjzITvj2doaU0,4626
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- linkml/generators/yumlgen.py,sha256=lnHcLY0VwlU_i8QporSmwR62CXSV4aOCXKxRDw5AxUk,12196
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+ linkml/generators/yumlgen.py,sha256=xmMCHPDg-x1vhqc4M-_YmU49-yFan_mjZkve4vCVBaU,12197
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@@ -97,13 +97,14 @@ linkml/transformers/logical_model_transformer.py,sha256=Luc8cKWIGrRAXQ9DSLA03fgp
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- linkml/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ linkml/utils/__init__.py,sha256=Pkyv-Gfb8QoJdInRdJuuUz1Igfe0sT9t8Gv3V_fyTXc,92
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+ linkml/utils/deprecation.py,sha256=onhB82qjIkKzyUOTO9WDqN6QF3I2cJoyBrbm66vHmgM,8088
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- linkml/utils/generator.py,sha256=ytpcq3s7cJMYpLAcL2H_F-1FWbog3FlUXkylm1It25M,38394
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+ linkml/utils/generator.py,sha256=nAZTBFDKAZ2Asi6f54-GSOZoP03jQKgbYCW82KA34Z4,39100
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@@ -117,7 +118,7 @@ linkml/utils/sqlutils.py,sha256=Cwoaz44MLcvAGUEBshT4jtn0Z3w7jVOp85zGkd6FTHY,1707
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- linkml/validator/cli.py,sha256=VwYWDvR2fN37tOyz9L2k_TlE_NpUQx-MYeJ9p1O0qaI,7261
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+ linkml/validator/cli.py,sha256=uVe_tbBzsK-4BNboE5zRyohS_dEs5Nl1gbhklrzOEpw,7605
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@@ -125,12 +126,12 @@ linkml/validator/loaders/loader.py,sha256=YKQXmSZhCymvvb2Dbr4lVCKVDt-lOIayzRD7CW
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- linkml/validator/plugins/jsonschema_validation_plugin.py,sha256=hMPlCyAdMg_N_OHiHMaxcG0fsOA50V4oBNqorNz_oqE,2528
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+ linkml/validator/plugins/jsonschema_validation_plugin.py,sha256=c3OjvLR5m83vppsDfkrS9nMXma_ogUxXpZuM_JIUVM4,2634
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  linkml/validator/plugins/pydantic_validation_plugin.py,sha256=C-Vp74bz5oqp5V-iuhXW8p0PPDoFY8NCU5x36Ur5Og4,1985
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  linkml/validator/plugins/recommended_slots_plugin.py,sha256=kOdoYQyye47nLA7BjorVmydS84nGpiVy3MoCbPq1Ymo,2308
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  linkml/validator/plugins/shacl_validation_plugin.py,sha256=X6h1O54m9P5USvqCvNqELD0YpzXkE6UrmxnV0ukU6E4,3888
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  linkml/validator/plugins/validation_plugin.py,sha256=9SMHF8b2bgG9-8351e8bY676e0A4aEBJSXvMjMF5kXg,1548
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- linkml/validator/report.py,sha256=kkkuh-IZF9--cO-2wGjwP3PDLvOcjjvC8AOlxXUIOAM,870
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+ linkml/validator/report.py,sha256=LwFpmJ74Cvsi2CuEDhm1a8nn9x1VI3Z98DbkUZVhKMA,898
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  linkml/validator/validation_context.py,sha256=Pmccq-LQ9iEeLyZhamp3mKjjtwp4ji1hIe5TT05AUT4,2732
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  linkml/validator/validator.py,sha256=BFgfKdu9Nad2dc9XTpmz9daQTj_FTcvo6mBq3e8fhJs,5649
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  linkml/validators/__init__.py,sha256=43W3J5NPKhwa3ZFHLRYsJMocwQKWGYCF9Ki9r0ccGbc,202
@@ -140,9 +141,9 @@ linkml/workspaces/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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  linkml/workspaces/datamodel/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml/workspaces/datamodel/workspaces.py,sha256=4HdkqweGNfMPqnB1_Onc9DcTfkhoagTRcqruh08nRoI,14905
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  linkml/workspaces/datamodel/workspaces.yaml,sha256=EjVrwPpeRZqJRjuGyyDRxxFzuv55SiLIXPBRUG6HStU,4233
143
- linkml/workspaces/example_runner.py,sha256=OmC_yZLIb4KXGQrstBVZL0UAQ9ZAaraguQF0RSf-snk,11611
144
- linkml-1.7.8.dist-info/METADATA,sha256=7Nrt0dXBtqeom1Q3W5wGtdrLzzEcIhoURNoTaZfRyiY,3724
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- linkml-1.7.8.dist-info/WHEEL,sha256=vVCvjcmxuUltf8cYhJ0sJMRDLr1XsPuxEId8YDzbyCY,88
146
- linkml-1.7.8.dist-info/entry_points.txt,sha256=7haDkIbyC7ZLhm5z-e3BhrLJpY2xoW1yuD8Y7QPNtVg,2093
147
- linkml-1.7.8.dist-info/LICENSE,sha256=kORMoywK6j9_iy0UvLR-a80P1Rvc9AOM4gsKlUNZABg,535
148
- linkml-1.7.8.dist-info/RECORD,,
144
+ linkml/workspaces/example_runner.py,sha256=hDk2RGxRE5-WYNriWknugtbm3Mhn8bFcAcXGMlkYxVk,11705
145
+ linkml-1.7.10.dist-info/LICENSE,sha256=kORMoywK6j9_iy0UvLR-a80P1Rvc9AOM4gsKlUNZABg,535
146
+ linkml-1.7.10.dist-info/METADATA,sha256=yPm-MeDgZDVgX_q3NF46RfunUoxWV2Mc5W6-ZkE6x_Y,3725
147
+ linkml-1.7.10.dist-info/entry_points.txt,sha256=7haDkIbyC7ZLhm5z-e3BhrLJpY2xoW1yuD8Y7QPNtVg,2093
148
+ linkml-1.7.10.dist-info/WHEEL,sha256=vVCvjcmxuUltf8cYhJ0sJMRDLr1XsPuxEId8YDzbyCY,88
149
+ linkml-1.7.10.dist-info/RECORD,,