linkml-store 0.3.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- linkml_store/__init__.py +7 -0
- linkml_store/api/__init__.py +8 -0
- linkml_store/api/client.py +414 -0
- linkml_store/api/collection.py +1280 -0
- linkml_store/api/config.py +187 -0
- linkml_store/api/database.py +862 -0
- linkml_store/api/queries.py +69 -0
- linkml_store/api/stores/__init__.py +0 -0
- linkml_store/api/stores/chromadb/__init__.py +7 -0
- linkml_store/api/stores/chromadb/chromadb_collection.py +121 -0
- linkml_store/api/stores/chromadb/chromadb_database.py +89 -0
- linkml_store/api/stores/dremio/__init__.py +10 -0
- linkml_store/api/stores/dremio/dremio_collection.py +555 -0
- linkml_store/api/stores/dremio/dremio_database.py +1052 -0
- linkml_store/api/stores/dremio/mappings.py +105 -0
- linkml_store/api/stores/dremio_rest/__init__.py +11 -0
- linkml_store/api/stores/dremio_rest/dremio_rest_collection.py +502 -0
- linkml_store/api/stores/dremio_rest/dremio_rest_database.py +1023 -0
- linkml_store/api/stores/duckdb/__init__.py +16 -0
- linkml_store/api/stores/duckdb/duckdb_collection.py +339 -0
- linkml_store/api/stores/duckdb/duckdb_database.py +283 -0
- linkml_store/api/stores/duckdb/mappings.py +8 -0
- linkml_store/api/stores/filesystem/__init__.py +15 -0
- linkml_store/api/stores/filesystem/filesystem_collection.py +186 -0
- linkml_store/api/stores/filesystem/filesystem_database.py +81 -0
- linkml_store/api/stores/hdf5/__init__.py +7 -0
- linkml_store/api/stores/hdf5/hdf5_collection.py +104 -0
- linkml_store/api/stores/hdf5/hdf5_database.py +79 -0
- linkml_store/api/stores/ibis/__init__.py +5 -0
- linkml_store/api/stores/ibis/ibis_collection.py +488 -0
- linkml_store/api/stores/ibis/ibis_database.py +328 -0
- linkml_store/api/stores/mongodb/__init__.py +25 -0
- linkml_store/api/stores/mongodb/mongodb_collection.py +379 -0
- linkml_store/api/stores/mongodb/mongodb_database.py +114 -0
- linkml_store/api/stores/neo4j/__init__.py +0 -0
- linkml_store/api/stores/neo4j/neo4j_collection.py +429 -0
- linkml_store/api/stores/neo4j/neo4j_database.py +154 -0
- linkml_store/api/stores/solr/__init__.py +3 -0
- linkml_store/api/stores/solr/solr_collection.py +224 -0
- linkml_store/api/stores/solr/solr_database.py +83 -0
- linkml_store/api/stores/solr/solr_utils.py +0 -0
- linkml_store/api/types.py +4 -0
- linkml_store/cli.py +1147 -0
- linkml_store/constants.py +7 -0
- linkml_store/graphs/__init__.py +0 -0
- linkml_store/graphs/graph_map.py +24 -0
- linkml_store/index/__init__.py +53 -0
- linkml_store/index/implementations/__init__.py +0 -0
- linkml_store/index/implementations/llm_indexer.py +174 -0
- linkml_store/index/implementations/simple_indexer.py +43 -0
- linkml_store/index/indexer.py +211 -0
- linkml_store/inference/__init__.py +13 -0
- linkml_store/inference/evaluation.py +195 -0
- linkml_store/inference/implementations/__init__.py +0 -0
- linkml_store/inference/implementations/llm_inference_engine.py +154 -0
- linkml_store/inference/implementations/rag_inference_engine.py +276 -0
- linkml_store/inference/implementations/rule_based_inference_engine.py +169 -0
- linkml_store/inference/implementations/sklearn_inference_engine.py +314 -0
- linkml_store/inference/inference_config.py +66 -0
- linkml_store/inference/inference_engine.py +209 -0
- linkml_store/inference/inference_engine_registry.py +74 -0
- linkml_store/plotting/__init__.py +5 -0
- linkml_store/plotting/cli.py +826 -0
- linkml_store/plotting/dimensionality_reduction.py +453 -0
- linkml_store/plotting/embedding_plot.py +489 -0
- linkml_store/plotting/facet_chart.py +73 -0
- linkml_store/plotting/heatmap.py +383 -0
- linkml_store/utils/__init__.py +0 -0
- linkml_store/utils/change_utils.py +17 -0
- linkml_store/utils/dat_parser.py +95 -0
- linkml_store/utils/embedding_matcher.py +424 -0
- linkml_store/utils/embedding_utils.py +299 -0
- linkml_store/utils/enrichment_analyzer.py +217 -0
- linkml_store/utils/file_utils.py +37 -0
- linkml_store/utils/format_utils.py +550 -0
- linkml_store/utils/io.py +38 -0
- linkml_store/utils/llm_utils.py +122 -0
- linkml_store/utils/mongodb_utils.py +145 -0
- linkml_store/utils/neo4j_utils.py +42 -0
- linkml_store/utils/object_utils.py +190 -0
- linkml_store/utils/pandas_utils.py +93 -0
- linkml_store/utils/patch_utils.py +126 -0
- linkml_store/utils/query_utils.py +89 -0
- linkml_store/utils/schema_utils.py +23 -0
- linkml_store/utils/sklearn_utils.py +193 -0
- linkml_store/utils/sql_utils.py +177 -0
- linkml_store/utils/stats_utils.py +53 -0
- linkml_store/utils/vector_utils.py +158 -0
- linkml_store/webapi/__init__.py +0 -0
- linkml_store/webapi/html/__init__.py +3 -0
- linkml_store/webapi/html/base.html.j2 +24 -0
- linkml_store/webapi/html/collection_details.html.j2 +15 -0
- linkml_store/webapi/html/database_details.html.j2 +16 -0
- linkml_store/webapi/html/databases.html.j2 +14 -0
- linkml_store/webapi/html/generic.html.j2 +43 -0
- linkml_store/webapi/main.py +855 -0
- linkml_store-0.3.0.dist-info/METADATA +226 -0
- linkml_store-0.3.0.dist-info/RECORD +101 -0
- linkml_store-0.3.0.dist-info/WHEEL +4 -0
- linkml_store-0.3.0.dist-info/entry_points.txt +3 -0
- linkml_store-0.3.0.dist-info/licenses/LICENSE +22 -0
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{% extends "base.html.j2" %}
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{% macro make_link(link) %}
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{{ link.rel }} [
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page: <a href="/pages{{ link.href }}">/pages{{ link.href }}</a> |
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API: <a href="{{ link.href }}">{{ link.href }}</a> ]
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<a href="{{ href }}">{{ rel }}</a>
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{% endmacro %}
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{% block title %}{meta.path}{% endblock %}
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{% block content %}
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<h1>Meta</h1>
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<pre>
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{{ response.meta }}
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</pre>
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<h1>Links</h1>
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<ul>
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{% for link in response.links %}
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<li> {{ make_link(link) }} </li>
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{% endfor %}
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</ul>
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{% if response.items != None and response["items"] != None %}
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<h1>Items</h1>
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<ul>
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{% for item in response["items"] %}
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<li>
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{{ item.name }}
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{% for link in item.links %}
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{{ make_link(link) }}
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{% endfor %}
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HTML: {{ item.html | safe }}
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</li>
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{% endfor %}
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{% endif %}
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<h1>Data</h1>
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<pre>
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{{ response.data }}
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</pre>
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{% endblock %}
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