linkml-store 0.1.14__py3-none-any.whl → 0.2.1__py3-none-any.whl

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Files changed (21) hide show
  1. linkml_store/api/collection.py +48 -5
  2. linkml_store/api/database.py +7 -1
  3. linkml_store/api/queries.py +3 -1
  4. linkml_store/api/stores/duckdb/duckdb_collection.py +8 -2
  5. linkml_store/cli.py +44 -18
  6. linkml_store/index/implementations/llm_indexer.py +20 -2
  7. linkml_store/index/indexer.py +51 -1
  8. linkml_store/inference/evaluation.py +195 -0
  9. linkml_store/inference/implementations/rag_inference_engine.py +120 -33
  10. linkml_store/inference/implementations/rule_based_inference_engine.py +15 -4
  11. linkml_store/inference/implementations/sklearn_inference_engine.py +20 -2
  12. linkml_store/inference/inference_config.py +1 -0
  13. linkml_store/inference/inference_engine.py +53 -19
  14. linkml_store/utils/format_utils.py +6 -0
  15. linkml_store/utils/llm_utils.py +2 -0
  16. linkml_store/utils/object_utils.py +100 -1
  17. {linkml_store-0.1.14.dist-info → linkml_store-0.2.1.dist-info}/METADATA +9 -1
  18. {linkml_store-0.1.14.dist-info → linkml_store-0.2.1.dist-info}/RECORD +21 -20
  19. {linkml_store-0.1.14.dist-info → linkml_store-0.2.1.dist-info}/LICENSE +0 -0
  20. {linkml_store-0.1.14.dist-info → linkml_store-0.2.1.dist-info}/WHEEL +0 -0
  21. {linkml_store-0.1.14.dist-info → linkml_store-0.2.1.dist-info}/entry_points.txt +0 -0
{linkml_store-0.1.14.dist-info → linkml_store-0.2.1.dist-info}/RECORD RENAMED
@@ -1,16 +1,16 @@
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  linkml_store/__init__.py,sha256=jlU6WOUAn8cKIhzbTULmBTWpW9gZdEt7q_RI6KZN1bY,118
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  linkml_store/api/__init__.py,sha256=3CelcFEFz0y3MkQAzhQ9JxHIt1zFk6nYZxSmYTo8YZE,226
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  linkml_store/api/client.py,sha256=3klBXenQVbLjNQF3WmYfjASt3zvKOfWaCNp5aJM81Ec,12034
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- linkml_store/api/collection.py,sha256=7JndC6A9r3OVbR9aB6d_bdaYN53XU4FpppUterygOaE,37800
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+ linkml_store/api/collection.py,sha256=98qUYKVJOEzC9Sl9iBqxdBWnm_4Q8UT9r5UPRb4UoAU,39300
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  linkml_store/api/config.py,sha256=71pxQ5jM-ETxJWU7CzmKjsH6IEJUMP5sml381u9TYVk,5654
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- linkml_store/api/database.py,sha256=QVvUuLQPCxB4cvsS7rXqPSfoHkhcMzP9vUcsjkuEYds,29051
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- linkml_store/api/queries.py,sha256=w0qnNeCH6pC9WTGoEQYd300MF6o0G3atz2YxN3WecAs,2028
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+ linkml_store/api/database.py,sha256=nvae8jnOZsQIFCsl_lRBnKcvrpJg4A10ujIKGeMyUS8,29350
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+ linkml_store/api/queries.py,sha256=tx9fgGY5fC_2ZbIvg4BqTK_MXJwA_DI4mxr8HdQ6Vos,2075
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  linkml_store/api/stores/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml_store/api/stores/chromadb/__init__.py,sha256=e9BkOPuPnVQKA5PRKDulag59yGNHDP3U2_DnPSrFAKM,132
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  linkml_store/api/stores/chromadb/chromadb_collection.py,sha256=RQUZx5oeotkzNihg-dlSevkiTiKY1d9x0bS63HF80W4,4270
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  linkml_store/api/stores/chromadb/chromadb_database.py,sha256=dZA3LQE8-ZMhJQOzsUFyxehnKpFF7adR182aggfkaFY,3205
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  linkml_store/api/stores/duckdb/__init__.py,sha256=rbQSDgNg-fdvi6-pHGYkJTST4p1qXUZBf9sFSsO3KPk,387
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- linkml_store/api/stores/duckdb/duckdb_collection.py,sha256=d9aYNFt9t8itNmhb6H2PdsxHL1dkYiW0N9wF8SATk1g,6767
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+ linkml_store/api/stores/duckdb/duckdb_collection.py,sha256=Rkbm_uIVIRj5576lEolsyY_3Um1h8Lf3RHn8Fy3LIgU,7036
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  linkml_store/api/stores/duckdb/duckdb_database.py,sha256=GH9bcOfHpNp6r-Eu1C3W0xuYcLsqGFDH1Sh4weifGaQ,9923
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  linkml_store/api/stores/duckdb/mappings.py,sha256=tDce3W1Apwammhf4LS6cRJ0m4NiJ0eB7vOI_4U5ETY8,148
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  linkml_store/api/stores/filesystem/__init__.py,sha256=KjvCjdttwqMHNeGyL-gr59zRz0--HFEWWUNNCJ5hITs,347
@@ -30,32 +30,33 @@ linkml_store/api/stores/solr/solr_collection.py,sha256=ZlxC3JbVaHfSA4HuTeJTsp6qe
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  linkml_store/api/stores/solr/solr_database.py,sha256=TFjqbY7jAkdrhAchbNg0E-mChSP7ogNwFExslbvX7Yo,2877
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  linkml_store/api/stores/solr/solr_utils.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml_store/api/types.py,sha256=3aIQtDFMvsSmjuN5qrR2vNK5sHa6yzD_rEOPA6tHwvg,176
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- linkml_store/cli.py,sha256=6JN5kqAIQeatKQndrQlHxMj-7hClRuaDNnR_fIx-9l4,26529
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+ linkml_store/cli.py,sha256=6pcVHM_hNH7EicleoCkjMVAbrGFZu8V_k2mv3aX0SH8,27703
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  linkml_store/constants.py,sha256=x4ZmDsfE9rZcL5WpA93uTKrRWzCD6GodYXviVzIvR38,112
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  linkml_store/graphs/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml_store/graphs/graph_map.py,sha256=bYRxv8n1YPnFqE9d6JKNmRawb8EAhsPlHhBue0gvtZE,712
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  linkml_store/index/__init__.py,sha256=6SQzDe-WZSSqbGNsbCDfyPTyz0s9ISDKw1dm9xgQuT4,1396
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  linkml_store/index/implementations/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- linkml_store/index/implementations/llm_indexer.py,sha256=LI5f8SLF_rJY5W6wZPLaUqpyoq-VDW_KqlCBNDNm_po,4827
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+ linkml_store/index/implementations/llm_indexer.py,sha256=y1xvfUm_rl4UEiWJbsUsEnTCma98XRB9C1XOnuaAv5o,5474
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  linkml_store/index/implementations/simple_indexer.py,sha256=KnkFJtXTHnwjhD_D6ZK2rFhBID1dgCedcOVPEWAY2NU,1282
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- linkml_store/index/indexer.py,sha256=K-TDPzdTyGFo6iG4XI_A_3IpwDbKeiTIbdr85NIL5r8,4918
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+ linkml_store/index/indexer.py,sha256=3P-VtIEqitnMoaFjcXIIosoU7tJInop1Qq39QRbcT-8,7107
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  linkml_store/inference/__init__.py,sha256=b8NAFNZjOYU_8gOvxdyCyoiHOOl5Ai2ckKs1tv7ZkkY,342
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+ linkml_store/inference/evaluation.py,sha256=YDFYaEu2QLSfFq4oyARrnKfTiPLtNF8irhhspgVDfdY,6013
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  linkml_store/inference/implementations/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- linkml_store/inference/implementations/rag_inference_engine.py,sha256=TG6nPy2QowycZRPKGwzBF80Wq6Qb7wyrA1gG_h47gYw,5812
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- linkml_store/inference/implementations/rule_based_inference_engine.py,sha256=bncdfRdqjj37DIUQLCzxTJNMwEHPWsWXiom4iN6m_q8,5774
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- linkml_store/inference/implementations/sklearn_inference_engine.py,sha256=UsvtwS76lSyf3_7O1cLNxoBqkPIRwCqJcdiOFKy7lw4,12672
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- linkml_store/inference/inference_config.py,sha256=xgl3VmueErLIOnQQn4HdC2STJNY6yKoPasWmym4ltHQ,2014
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- linkml_store/inference/inference_engine.py,sha256=-X8UFZwEYfavM-cfkEb-77JptWmNQUHBnxAuKdjUi7o,5513
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+ linkml_store/inference/implementations/rag_inference_engine.py,sha256=zmcbxmVZTm8ViSp7WFs8KHRNbzWXdZQl7J7VvcIjDyU,9049
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+ linkml_store/inference/implementations/rule_based_inference_engine.py,sha256=0IEY_fsHJPJy6QKbYQU_qE87RRnPOXQxPuJKXCQG8jU,6250
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+ linkml_store/inference/implementations/sklearn_inference_engine.py,sha256=Sdi7CoRK3qoLJu3prgLy1Ck_zQ1gHWRKFybHe7XQ4_g,13192
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+ linkml_store/inference/inference_config.py,sha256=SbAlgQDRCWawWohe0IWX_Kvy-DFeaLYsN1HqrmLvc0k,2052
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+ linkml_store/inference/inference_engine.py,sha256=l2UB6cA0rW7a9qyiv8JF5Nzj8nRHGX_yqMYbiDnY1Qc,7055
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  linkml_store/inference/inference_engine_registry.py,sha256=6o66gvBYBwdeAKm62zqqvfaBlcopVP_cla3L6uXGsHA,3015
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  linkml_store/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml_store/utils/change_utils.py,sha256=O2rvSvgTKB60reLLz9mX5OWykAA_m93bwnUh5ZWa0EY,471
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  linkml_store/utils/file_utils.py,sha256=rQ7-XpmI6_Kx_dhEnI98muFRr0MmgI_kZ_9cgJBf_0I,1411
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- linkml_store/utils/format_utils.py,sha256=JA7E-XYgkIGTXBSyTKSRrN7ZHeXOJ8-wpSjRTCAAAso,10680
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+ linkml_store/utils/format_utils.py,sha256=airJ2_tFsr0dTIbSHT5y0TZbDrvBBV4_qThFPFY5k8U,10925
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  linkml_store/utils/io.py,sha256=JHUrWDtlZC2jtN_PQZ4ypdGIyYlftZEN3JaCvEPs44w,884
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- linkml_store/utils/llm_utils.py,sha256=ItszPvHuQ6joU6vf30jGYfut5q9vrma3eYHighr1wOs,2840
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+ linkml_store/utils/llm_utils.py,sha256=3jRFUtEywoKdomKb3aCH1GdI9hQJOQo8Udb3Jy4M-Xw,2885
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  linkml_store/utils/mongodb_utils.py,sha256=Rl1YmMKs1IXwSsJIViSDChbi0Oer5cBnMmjka2TeQS8,4665
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  linkml_store/utils/neo4j_utils.py,sha256=y3KPmDZ8mQmePgg0lUeKkeKqzEr2rV226xxEtHc5pRg,1266
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- linkml_store/utils/object_utils.py,sha256=dAF9WmtWwAXdAnTN-UwbiCbBJt3Wdcsp8Z4lz8lVscY,2642
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+ linkml_store/utils/object_utils.py,sha256=Vib-5Ip2DlRVKLZpU-008ZZI813-vfKVSCY0TksRenM,6293
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  linkml_store/utils/pandas_utils.py,sha256=djiFPO3YbgRVo2XAZuKCtgH8QVLuUyPIsfS8e-0umsU,3182
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  linkml_store/utils/patch_utils.py,sha256=q-h_v68okyruzdPTEHCe0WubbQHKpi1qy5bJ9vFWDo8,4823
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  linkml_store/utils/query_utils.py,sha256=HWt46BsGWoIGiNBTtvpXGY6onPRWsQky6eu_9cYqbvo,3440
@@ -71,8 +72,8 @@ linkml_store/webapi/html/database_details.html.j2,sha256=qtXdavbZb0mohiObI9dvJtk
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  linkml_store/webapi/html/databases.html.j2,sha256=a9BCWQYfPeFhdUd31CWhB0yWhTIFXQayO08JgjyqKoc,294
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  linkml_store/webapi/html/generic.html.j2,sha256=KtLaO2HUEF2Opq-OwHKgRKetNWe8IWc6JuIkxRPsywk,1018
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  linkml_store/webapi/main.py,sha256=B0Da575kKR7X88N9ykm99Dem8FyBAW9f-w3A_JwUzfw,29165
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- linkml_store-0.1.14.dist-info/LICENSE,sha256=77mDOslUnalYnuq9xQYZKtIoNEzcH9mIjvWHOKjamnE,1086
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- linkml_store-0.1.14.dist-info/METADATA,sha256=T5BZ87qj1w2xyCkQErRa4ErFwvDKNMfahOGWYRkPQmg,6525
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- linkml_store-0.1.14.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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- linkml_store-0.1.14.dist-info/entry_points.txt,sha256=gWxVsHqx-t-UKWFHFzawQTvs4is4vC1rCF5AeKyqWWk,101
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- linkml_store-0.1.14.dist-info/RECORD,,
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+ linkml_store-0.2.1.dist-info/LICENSE,sha256=77mDOslUnalYnuq9xQYZKtIoNEzcH9mIjvWHOKjamnE,1086
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+ linkml_store-0.2.1.dist-info/METADATA,sha256=ERSRCW1gMtcuLoWX-jKKfpgz10BBIUrGw-TvwXW3o-c,6977
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+ linkml_store-0.2.1.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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+ linkml_store-0.2.1.dist-info/entry_points.txt,sha256=gWxVsHqx-t-UKWFHFzawQTvs4is4vC1rCF5AeKyqWWk,101
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+ linkml_store-0.2.1.dist-info/RECORD,,