linkml-store 0.1.10__py3-none-any.whl → 0.1.12__py3-none-any.whl

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Files changed (27) hide show
  1. linkml_store/api/client.py +63 -7
  2. linkml_store/api/collection.py +152 -32
  3. linkml_store/api/config.py +49 -6
  4. linkml_store/api/database.py +77 -30
  5. linkml_store/api/stores/duckdb/duckdb_collection.py +16 -0
  6. linkml_store/api/stores/duckdb/duckdb_database.py +47 -5
  7. linkml_store/api/stores/filesystem/filesystem_collection.py +11 -4
  8. linkml_store/api/stores/filesystem/filesystem_database.py +10 -1
  9. linkml_store/api/stores/mongodb/mongodb_collection.py +6 -2
  10. linkml_store/api/stores/mongodb/mongodb_database.py +30 -35
  11. linkml_store/api/stores/solr/solr_collection.py +4 -4
  12. linkml_store/cli.py +64 -19
  13. linkml_store/index/__init__.py +16 -2
  14. linkml_store/index/implementations/llm_indexer.py +2 -1
  15. linkml_store/index/indexer.py +13 -2
  16. linkml_store/utils/file_utils.py +37 -0
  17. linkml_store/utils/format_utils.py +200 -21
  18. linkml_store/utils/mongodb_utils.py +145 -0
  19. linkml_store/utils/pandas_utils.py +40 -0
  20. linkml_store/utils/sql_utils.py +9 -3
  21. linkml_store/webapi/html/generic.html.j2 +25 -28
  22. linkml_store/webapi/main.py +346 -63
  23. {linkml_store-0.1.10.dist-info → linkml_store-0.1.12.dist-info}/METADATA +36 -3
  24. {linkml_store-0.1.10.dist-info → linkml_store-0.1.12.dist-info}/RECORD +27 -24
  25. {linkml_store-0.1.10.dist-info → linkml_store-0.1.12.dist-info}/LICENSE +0 -0
  26. {linkml_store-0.1.10.dist-info → linkml_store-0.1.12.dist-info}/WHEEL +0 -0
  27. {linkml_store-0.1.10.dist-info → linkml_store-0.1.12.dist-info}/entry_points.txt +0 -0
{linkml_store-0.1.10.dist-info → linkml_store-0.1.12.dist-info}/RECORD RENAMED
@@ -1,58 +1,61 @@
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  linkml_store/__init__.py,sha256=jlU6WOUAn8cKIhzbTULmBTWpW9gZdEt7q_RI6KZN1bY,118
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  linkml_store/api/__init__.py,sha256=3CelcFEFz0y3MkQAzhQ9JxHIt1zFk6nYZxSmYTo8YZE,226
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- linkml_store/api/client.py,sha256=dkcjZMx8V8a-zlD2Vm7QA8VVoKyk2wQQe0Ug1zcT-6o,9075
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- linkml_store/api/collection.py,sha256=ZWVON3axSmvWQUrCNxPqVXthQ4VaeHmqprjwgNXYj9M,30357
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- linkml_store/api/config.py,sha256=pgF9D_5buhChBIZXBkc84tNE0VQtP0iwCQ63Br1QR0c,3785
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- linkml_store/api/database.py,sha256=9H-bj4_v_iJ5iQm_uaoR4_LefZknmbod--tOqD5mYmE,25730
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+ linkml_store/api/client.py,sha256=8hfO7loCxGbqcmbKXqheRRh5AUbhHvFJxk1WDiYIYik,10890
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+ linkml_store/api/collection.py,sha256=cbi2kj_DhIxz32SH-vjiZduXb9oUE2YTVGxAUmxvyTA,35097
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+ linkml_store/api/config.py,sha256=u8bl5qqTtp_woLkkiE9f2f6AUr3OD4xZt4aJTE_j93Q,4798
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+ linkml_store/api/database.py,sha256=BvaK1lybtClRYvoXILnBVYJzdhhpyNmtuU0Got5BBoI,28213
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  linkml_store/api/queries.py,sha256=w0qnNeCH6pC9WTGoEQYd300MF6o0G3atz2YxN3WecAs,2028
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  linkml_store/api/stores/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml_store/api/stores/chromadb/__init__.py,sha256=e9BkOPuPnVQKA5PRKDulag59yGNHDP3U2_DnPSrFAKM,132
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  linkml_store/api/stores/chromadb/chromadb_collection.py,sha256=RQUZx5oeotkzNihg-dlSevkiTiKY1d9x0bS63HF80W4,4270
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  linkml_store/api/stores/chromadb/chromadb_database.py,sha256=dZA3LQE8-ZMhJQOzsUFyxehnKpFF7adR182aggfkaFY,3205
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  linkml_store/api/stores/duckdb/__init__.py,sha256=rbQSDgNg-fdvi6-pHGYkJTST4p1qXUZBf9sFSsO3KPk,387
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- linkml_store/api/stores/duckdb/duckdb_collection.py,sha256=LTcrvPEuSaQP1riGytUCdmmbFb_zZFl1mDG6TqqXfto,6246
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- linkml_store/api/stores/duckdb/duckdb_database.py,sha256=O3hKEMLT5sn4JLL6te-xcUz2UT6zSQeqv6YwRUGZWK8,8175
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+ linkml_store/api/stores/duckdb/duckdb_collection.py,sha256=d9aYNFt9t8itNmhb6H2PdsxHL1dkYiW0N9wF8SATk1g,6767
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+ linkml_store/api/stores/duckdb/duckdb_database.py,sha256=GH9bcOfHpNp6r-Eu1C3W0xuYcLsqGFDH1Sh4weifGaQ,9923
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  linkml_store/api/stores/duckdb/mappings.py,sha256=tDce3W1Apwammhf4LS6cRJ0m4NiJ0eB7vOI_4U5ETY8,148
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  linkml_store/api/stores/filesystem/__init__.py,sha256=KjvCjdttwqMHNeGyL-gr59zRz0--HFEWWUNNCJ5hITs,347
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- linkml_store/api/stores/filesystem/filesystem_collection.py,sha256=QPCuCHbxzbMPcsvxVp7kOAnT5_8m0kW60SZHtRo_87A,6403
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- linkml_store/api/stores/filesystem/filesystem_database.py,sha256=HnHIv1aVtTiFSPY09s40QrMNhn_e-IKCYRXQk1S25Ak,2554
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+ linkml_store/api/stores/filesystem/filesystem_collection.py,sha256=9gqY2KRZsn_RWk4eKkxFd3_wcxs5YaXvcBI7GGJBMGE,6751
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+ linkml_store/api/stores/filesystem/filesystem_database.py,sha256=sV-lueyrh3R6edyWkwN6qKa7yjPc8PIcF1rxgox6oA4,2875
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  linkml_store/api/stores/hdf5/__init__.py,sha256=l4cIh3v7P0nPbwGIsfuCMD_serQ8q8c7iuUA9W2Jb4o,97
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  linkml_store/api/stores/hdf5/hdf5_collection.py,sha256=mnpLMYehn3PuaIjp2dXrIWu8jh-bdQ84X2Ku83jMdEY,3805
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  linkml_store/api/stores/hdf5/hdf5_database.py,sha256=EZbjrpaqiNDEFvoD5dZNcGBXA8z6HRNL81emueTZWNw,2714
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  linkml_store/api/stores/mongodb/__init__.py,sha256=OSFCr7RQlDEe-O-Y0P_i912oAMK-L3pC7Cnj7sxlwAk,510
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- linkml_store/api/stores/mongodb/mongodb_collection.py,sha256=R3zFca45V6_s8D_4f-tEhrFf_NH6z8UJj5suG7GshJc,6529
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- linkml_store/api/stores/mongodb/mongodb_database.py,sha256=DKO-lMQzHyf-szVgH4tsP0UA68dlCFGv-oyVuXOIUd0,4003
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+ linkml_store/api/stores/mongodb/mongodb_collection.py,sha256=W-j1tkk8h1-zzjIRe-IYAnAOwlFSwr4fnDtgiu7RsVI,6695
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+ linkml_store/api/stores/mongodb/mongodb_database.py,sha256=Y9MIV0KSRGCyopz8vGEivhSuvF0vZLCDJd29cdqMIX8,3857
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  linkml_store/api/stores/solr/__init__.py,sha256=aAfnaN9mZOiIDj1NYz0Ll9fZF2gG7UU_vhP4SNCL2d8,36
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- linkml_store/api/stores/solr/solr_collection.py,sha256=8GmxErlWFOO0NnJiYo1Q7hegxCsfxaWc79eN7Jn02gA,4723
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+ linkml_store/api/stores/solr/solr_collection.py,sha256=ZlxC3JbVaHfSA4HuTeJTsp6qe48tHS6Fgel5jsqXcsM,4727
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  linkml_store/api/stores/solr/solr_database.py,sha256=TFjqbY7jAkdrhAchbNg0E-mChSP7ogNwFExslbvX7Yo,2877
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  linkml_store/api/stores/solr/solr_utils.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml_store/api/types.py,sha256=3aIQtDFMvsSmjuN5qrR2vNK5sHa6yzD_rEOPA6tHwvg,176
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- linkml_store/cli.py,sha256=Y8QUPMCRY5jkwwvz-78k5A1dM-nOj1lavZsBR2gGTMw,19325
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+ linkml_store/cli.py,sha256=_oDbqElZIWKHJ6ruJyu57rbg2IYUr7U-0AqDlKz6jug,21126
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  linkml_store/constants.py,sha256=x4ZmDsfE9rZcL5WpA93uTKrRWzCD6GodYXviVzIvR38,112
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- linkml_store/index/__init__.py,sha256=n5omzpf9nuQ8Dl2vjTVE4ATBXI0Lrs3HNmB25ZsPB1w,1076
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+ linkml_store/index/__init__.py,sha256=6SQzDe-WZSSqbGNsbCDfyPTyz0s9ISDKw1dm9xgQuT4,1396
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  linkml_store/index/implementations/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- linkml_store/index/implementations/llm_indexer.py,sha256=04cz-UaKlV7WTubHVr0v94XfqbN0N2Nnoud9Z7nETH4,4779
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+ linkml_store/index/implementations/llm_indexer.py,sha256=LI5f8SLF_rJY5W6wZPLaUqpyoq-VDW_KqlCBNDNm_po,4827
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  linkml_store/index/implementations/simple_indexer.py,sha256=KnkFJtXTHnwjhD_D6ZK2rFhBID1dgCedcOVPEWAY2NU,1282
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- linkml_store/index/indexer.py,sha256=F130IKT6xZ9tTeH6D32sCcZkkLTTha8CETgZz_ksXyY,4737
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+ linkml_store/index/indexer.py,sha256=K-TDPzdTyGFo6iG4XI_A_3IpwDbKeiTIbdr85NIL5r8,4918
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  linkml_store/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml_store/utils/change_utils.py,sha256=O2rvSvgTKB60reLLz9mX5OWykAA_m93bwnUh5ZWa0EY,471
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- linkml_store/utils/format_utils.py,sha256=kG-mTE9bZXfYvXsrShQN5Tz_Nxj-DFW_ykgJKVJlLQE,6581
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+ linkml_store/utils/file_utils.py,sha256=rQ7-XpmI6_Kx_dhEnI98muFRr0MmgI_kZ_9cgJBf_0I,1411
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+ linkml_store/utils/format_utils.py,sha256=aBS0uUhvdgPEXzw72iGfSezmHZFnqHtPuFUbVR4cfbA,13174
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  linkml_store/utils/io.py,sha256=JHUrWDtlZC2jtN_PQZ4ypdGIyYlftZEN3JaCvEPs44w,884
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+ linkml_store/utils/mongodb_utils.py,sha256=Rl1YmMKs1IXwSsJIViSDChbi0Oer5cBnMmjka2TeQS8,4665
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  linkml_store/utils/object_utils.py,sha256=is6T2gruvVKvWD5ZntcAl6Qi3L154FObEho_b_crTuE,2539
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+ linkml_store/utils/pandas_utils.py,sha256=INL8aZ5v2OeLg-Uzfa8P1cpnMMKA1DumiTB0q175tw8,1389
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  linkml_store/utils/patch_utils.py,sha256=q-h_v68okyruzdPTEHCe0WubbQHKpi1qy5bJ9vFWDo8,4823
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  linkml_store/utils/query_utils.py,sha256=HWt46BsGWoIGiNBTtvpXGY6onPRWsQky6eu_9cYqbvo,3440
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  linkml_store/utils/schema_utils.py,sha256=iJiZxo5NGr7v87h4DV6V9DrDOZHSswMRuf0N4V2rVtg,646
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- linkml_store/utils/sql_utils.py,sha256=TeAhAHXi1GA0f2UVrxbzStwe49Q7fN0mu5WZyfDk-s8,5651
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+ linkml_store/utils/sql_utils.py,sha256=T41w_vsc3SauTJQkDMwid_nOtKW1YOKyUuaxEf470hk,5938
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  linkml_store/webapi/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  linkml_store/webapi/html/__init__.py,sha256=hwp5eeBJKH65Bvv1x9Z4vsT1tLSYtb9Dq4I9r1kL1q0,69
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  linkml_store/webapi/html/base.html.j2,sha256=hoiV2uaSxxrQp7VuAZBOHueH7czyJMYcPBRN6dZFYhk,693
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  linkml_store/webapi/html/collection_details.html.j2,sha256=FcCnkgtJAhfW84tVXQfAXP8eiq4BcrTeudZXQGL1Slg,385
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  linkml_store/webapi/html/database_details.html.j2,sha256=qtXdavbZb0mohiObI9dvJtkifAS16LAOcgv8qwtQz70,451
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  linkml_store/webapi/html/databases.html.j2,sha256=a9BCWQYfPeFhdUd31CWhB0yWhTIFXQayO08JgjyqKoc,294
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- linkml_store/webapi/html/generic.html.j2,sha256=1P5BKExQX5ZI94tUlMHK9BtTIXkP2ZnLAS014bPOgZM,1001
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- linkml_store/webapi/main.py,sha256=VurUh7iAFB0pgdevguRgVcsOgFfKZecOLLkDeLUEGIc,20306
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- linkml_store-0.1.10.dist-info/LICENSE,sha256=77mDOslUnalYnuq9xQYZKtIoNEzcH9mIjvWHOKjamnE,1086
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- linkml_store-0.1.10.dist-info/METADATA,sha256=Sgmk0smejNvDqBKqhVO-yF7H1YzMkdrZnA-0HNmLjxo,4746
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- linkml_store-0.1.10.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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- linkml_store-0.1.10.dist-info/entry_points.txt,sha256=gWxVsHqx-t-UKWFHFzawQTvs4is4vC1rCF5AeKyqWWk,101
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- linkml_store-0.1.10.dist-info/RECORD,,
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+ linkml_store/webapi/html/generic.html.j2,sha256=KtLaO2HUEF2Opq-OwHKgRKetNWe8IWc6JuIkxRPsywk,1018
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+ linkml_store/webapi/main.py,sha256=B0Da575kKR7X88N9ykm99Dem8FyBAW9f-w3A_JwUzfw,29165
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+ linkml_store-0.1.12.dist-info/LICENSE,sha256=77mDOslUnalYnuq9xQYZKtIoNEzcH9mIjvWHOKjamnE,1086
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+ linkml_store-0.1.12.dist-info/METADATA,sha256=4bQ68MKFKwRcoYs6tMLq7Pn_E1IHZtorMeLSVxJBHV8,5471
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+ linkml_store-0.1.12.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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+ linkml_store-0.1.12.dist-info/entry_points.txt,sha256=gWxVsHqx-t-UKWFHFzawQTvs4is4vC1rCF5AeKyqWWk,101
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+ linkml_store-0.1.12.dist-info/RECORD,,