lightly-studio 0.3.1__py3-none-any.whl → 0.3.3__py3-none-any.whl

{lightly_studio-0.3.1.dist-info → lightly_studio-0.3.3.dist-info}/RECORD

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+lightly_studio/resolvers/embedding_model_resolver.py,sha256=GfcsSYj8Dw1WwFh0Zz4NPEPF2EgNJXTosTKW7_uo2YQ,4391
 lightly_studio/resolvers/sample_embedding_resolver.py,sha256=M7Uw6Bv6XBHPXraV8ja_KpjJ35rQzlwGys-fAQLtwn0,2937
-lightly_studio/resolvers/sample_resolver.py,sha256=8VvvlirPvlqR_I6Y5pbCHfWxlJTK5VjAqbGeT5vE1Cs,9027
+lightly_studio/resolvers/sample_resolver.py,sha256=dS8khKwxmsvyc8tYfswYLIkq4UFLOKEqpdYo0st5WIk,10901
 lightly_studio/resolvers/samples_filter.py,sha256=-76zxZb-GnrhpnhjEXVzQtdNGqyIJjPH6rpkNRzswTA,3182
 lightly_studio/resolvers/settings_resolver.py,sha256=15mSvoBALtHps4un3s_dk2lB2F-e8v_II97vwn056sg,1628
-lightly_studio/resolvers/tag_resolver.py,sha256=04_BH6cnkJ3GK9K19RGURHSbJonRSra1T_4BxSloJSY,8059
-lightly_studio/resolvers/annotation_label_resolver/__init__.py,sha256=dpGvay0BNAvk6tAF7tc3IDoKX5cNVVAlgEm2DcO81Nw,487
+lightly_studio/resolvers/tag_resolver.py,sha256=PuMQflQ-PumQF96EwAUcVkSIeFzi11JeqJDnXYwyyic,8782
+lightly_studio/resolvers/annotation_label_resolver/__init__.py,sha256=c0NxLRVKQYKxnPuGEI8dO-dBE610QxH0Vkz0oQwDwsI,555
 lightly_studio/resolvers/annotation_label_resolver/create.py,sha256=q2vrnOXd8S6FMp6BrM-d4Kz_ydeo9n-0gFZSOM-sY7E,750
 lightly_studio/resolvers/annotation_label_resolver/delete.py,sha256=uGpcC_PG96MdHxNdmv-1-PhxUrAy6A3bC4f8twwZ4Tw,653
-lightly_studio/resolvers/annotation_label_resolver/get_all.py,sha256=2rAJwXnQ7wmXRqeknjNJfjLy8cLtVNlAude84jreUS8,619
+lightly_studio/resolvers/annotation_label_resolver/get_all.py,sha256=ICGTGwS7GQxPSKm9dXGm0tY40ASFngMT_yGgI8A9flI,1094
 lightly_studio/resolvers/annotation_label_resolver/get_by_id.py,sha256=ApNkHolcbkLgDKYTzzATweS-daKX6uE-Eck1dwK58tk,755
 lightly_studio/resolvers/annotation_label_resolver/get_by_ids.py,sha256=ofuxTjMRjHe5CoyRwsRVT7AbQJyuXqjqSjQnQrPr4MA,797
 lightly_studio/resolvers/annotation_label_resolver/get_by_label_name.py,sha256=hhgX7WdYjSBGWcSgFN3s43yKURj3IF5HhEATs4hR2KU,743
 lightly_studio/resolvers/annotation_label_resolver/names_by_ids.py,sha256=kqDHrclODReDPOTi5K47dfQdO_uztTrl274hunURoK0,833
 lightly_studio/resolvers/annotation_label_resolver/update.py,sha256=Lzjv57VFphvZ_4k5DEsnitOSaWld9O3QqHQuEcH6g4U,989
-lightly_studio/resolvers/annotation_resolver/__init__.py,sha256=DBU_EOodhIaqymY0Dz8w4e5ODWl2n6SMo2DtA-W4isA,1119
+lightly_studio/resolvers/annotation_resolver/__init__.py,sha256=zpKrUmsMN80myN8KpegKG8ObySPtR4-yHmF2SUn20cs,1064
 lightly_studio/resolvers/annotation_resolver/count_annotations_by_dataset.py,sha256=0hgRFVJT02sNG_aWICSAm6JWPN10xGcNlFuoeWSMJ14,4280
-lightly_studio/resolvers/annotation_resolver/create.py,sha256=__h-aNI0Vi-2J-mFCIigz3Fm56UI3ZF7QQVYGrURg2c,556
-lightly_studio/resolvers/annotation_resolver/create_many.py,sha256=A2Zp87W8ZRotykOkrIqiiS54xFcTjB5rnBWm9SKXaj8,3800
-lightly_studio/resolvers/annotation_resolver/delete_annotation.py,sha256=a7Kb5lcx560jq2VIP2w83lNPcxEiQK4GEV5xZBzdXA0,1320
-lightly_studio/resolvers/annotation_resolver/delete_annotations.py,sha256=2gn0YyH5q4IW3-aE5wan0GAXw11OPWyd5TX13VunwYo,1891
+lightly_studio/resolvers/annotation_resolver/create_many.py,sha256=0lBfnC0kDwY6t105lkCFHLFOuyPQGD2wYSCYttjc0Uk,3783
+lightly_studio/resolvers/annotation_resolver/delete_annotation.py,sha256=_PugnfgDMTk7UNZzHb5_ZCgbUlSSd1JpS_yY1lGyxkw,1371
+lightly_studio/resolvers/annotation_resolver/delete_annotations.py,sha256=PwBkkuiYLpZVr_B0VdlL_SegKB6CSAk0B67yCFIjCf4,2114
 lightly_studio/resolvers/annotation_resolver/get_all.py,sha256=6YqdcVesm_rHc2An1ZFbEefVBZnRiHe8MaCfYYRGVU4,2176
-lightly_studio/resolvers/annotation_resolver/get_by_id.py,sha256=uBfhs_5wEgvX-Y1W2fsH-VxWoQFhzn4M9bNqz7BQjQM,521
-lightly_studio/resolvers/annotation_resolver/update_annotation_label.py,sha256=WbSeGbraQMtvlEb4B4g5QXJtbYndIKMOkqKPvfK6fSc,5455
+lightly_studio/resolvers/annotation_resolver/get_by_id.py,sha256=chL9xS-4wR4BtFvn1Cf13GoqgFvKbr8-q7NHVce0FdY,1088
+lightly_studio/resolvers/annotation_resolver/update_annotation_label.py,sha256=2KL1SsoofZTMWjmKuKqe09TtquuzkmnSkxuJg8Ftk9Y,5388
 lightly_studio/resolvers/annotation_resolver/update_bounding_box.py,sha256=6Mok2dKXFSkFN3bSSd4TO_nUTTMKq83EN5aL5nocQQc,2280
 lightly_studio/resolvers/annotations/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
-lightly_studio/resolvers/annotations/annotations_filter.py,sha256=RdWb9snFFZkHnBEjsrdB8BEm5AqZnSsDnCakDnlKLxw,3080
+lightly_studio/resolvers/annotations/annotations_filter.py,sha256=eaZT6wttubYjSC35N88ary1mZwnKIC7k0zZWRCHSKns,2696
 lightly_studio/resolvers/metadata_resolver/__init__.py,sha256=jZZsOiOalzX5Sg4bSavTFzC49feQgIADWOb7abl_UMw,316
 lightly_studio/resolvers/metadata_resolver/metadata_filter.py,sha256=WpA5na4MfZxgRFNp_WdY6RA9FAnZPaL-mAGpb76pzm8,5169
 lightly_studio/resolvers/metadata_resolver/sample/__init__.py,sha256=2dSGpLxLFZGrg0U2LLRGrClRIvukwBh17aI8y2Sq_tE,404
@@ -178,13 +192,16 @@ lightly_studio/resolvers/metadata_resolver/sample/get_metadata_info.py,sha256=Rw
 lightly_studio/resolvers/metadata_resolver/sample/get_value_for_sample.py,sha256=NbPANvsFAyKvutYSC97HSFmmOmiNKcOU71zXmP3IRUU,702
 lightly_studio/resolvers/metadata_resolver/sample/set_value_for_sample.py,sha256=HNs5t8VACf9h_qJ69R_h34K1TPGa7UjQokkpEcl9530,1289
 lightly_studio/selection/README.md,sha256=X9KTCy5GmLxpVmb-MELqpBQKhlRxaQ0aQt5i3fnAOKQ,320
-lightly_studio/selection/mundig.py,sha256=okpQi0fL35vuJbqY3fA9MxTak41O__2eaHChPKZ7Sdo,4012
-lightly_studio/selection/select.py,sha256=P4LTIAtMQOfkLfCIMo7ZNAhJMPNSuJmNzJ3LdF7RIFU,3626
-lightly_studio/selection/select_via_db.py,sha256=PxhkMnABUmQc01a9WxnvNMc0doCOfrflxYLejqtF5qI,3365
-lightly_studio/selection/selection_config.py,sha256=6Gyq7rKTdgmtE8wR4fKfZR8zAAZ97PBD1te0ztNfrjI,735
-lightly_studio/services/annotations_service/__init__.py,sha256=jpJ5RzZRwtaKonw8hDoQnuHkeJDIv5rHyNkWNm44gko,593
+lightly_studio/selection/mundig.py,sha256=dRph7_lQbw4nTYqbvsAsPgUDD_TSZAOcYHWN6c2CLro,3991
+lightly_studio/selection/select.py,sha256=OQU8iw_h3qHRzq7L9rD2NlU56wRRosxJlZfdBa7EvGg,3663
+lightly_studio/selection/select_via_db.py,sha256=tLmNLuPaQqzSqdvmEo0Mc8-sFNMptikG9eruXqXlblE,3621
+lightly_studio/selection/selection_config.py,sha256=AqnXdYy5tkQ45wUfJS_Fbdjk-l9y9-ubis-7oFBCPq0,903
+lightly_studio/services/annotations_service/__init__.py,sha256=VRLb6c2KO2vCvfZ5r_PgVEZztV0d5PL-wrAIVxvQxBc,1010
+lightly_studio/services/annotations_service/create_annotation.py,sha256=ClN4cJJqpdg1eN7KmzuKAkQBbPkJKWAYi2PKewyS_mE,1581
+lightly_studio/services/annotations_service/delete_annotation.py,sha256=cDsE9fi0WSSGSRpwnATHpCJr8Dy7x2t9T8-pIesuSG0,604
 lightly_studio/services/annotations_service/get_annotation_by_id.py,sha256=95OyWCE5egmiY97P2_3xAbul_gWLDMM0Gf7Kgf9bKiM,804
-lightly_studio/services/annotations_service/update_annotation.py,sha256=Dt5axRSOua9YE-o_miwB5IYnOzNur1vOEtqsOvTj8go,1938
+lightly_studio/services/annotations_service/update_annotation.py,sha256=KzSB0XWSk2pj2CImkup8s12uy4urEAzVw4reUVewtC0,1569
+lightly_studio/services/annotations_service/update_annotation_bounding_box.py,sha256=zL76GVl9lmmPEHOlNbfmusKK1QO_uP0GSkzHQ15iZlw,1008
 lightly_studio/services/annotations_service/update_annotation_label.py,sha256=B84_9XkHdyCu-Tp7SW8yVtVRv1jmFtdHTEkLwMgpANA,1279
 lightly_studio/services/annotations_service/update_annotations.py,sha256=WAR8hLEE7FAJL7F8E6HQ63fQZzPBRSjxMtgSFaFZSZg,866
 lightly_studio/vendor/ACKNOWLEDGEMENTS,sha256=H99jquLjJeLv3hrtHTzJrdsGPqYKMfQNKlZL18KawoM,22903
@@ -214,6 +231,6 @@ lightly_studio/vendor/mobileclip/modules/image/replknet.py,sha256=kbcZTT3KAdpv7I
 lightly_studio/vendor/mobileclip/modules/text/__init__.py,sha256=xIBdotHUSILUTw9Um4NfLunDEtNuQVKRcZlVhwJih38,104
 lightly_studio/vendor/mobileclip/modules/text/repmixer.py,sha256=baFcHH8bLVeW2VET9gZvg2bUy080yLDVxDr4cuH2upg,9401
 lightly_studio/vendor/mobileclip/modules/text/tokenizer.py,sha256=g569KONPF33J-2BWgghUy3Xcj0vDE-g00W1YpOZiGwk,1328
-lightly_studio-0.3.1.dist-info/METADATA,sha256=opD9e2-1IQTH3-DHkE_EUGkpVLiEuv0oINNA5uiDYOQ,16018
-lightly_studio-0.3.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-lightly_studio-0.3.1.dist-info/RECORD,,
+lightly_studio-0.3.3.dist-info/METADATA,sha256=GAu_TwozDwtQheVlREzypMSiGcixpPBQavKicN5bn94,24226
+lightly_studio-0.3.3.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+lightly_studio-0.3.3.dist-info/RECORD,,

lightly_studio/api/db.py

@@ -1,133 +0,0 @@
-"""Module provides functions to initialize and manage the DuckDB."""
-
-from __future__ import annotations
-
-import logging
-import os
-from contextlib import contextmanager
-from typing import Generator
-
-from sqlalchemy.engine import Engine
-from sqlmodel import Session, SQLModel, create_engine
-
-import lightly_studio.api.db_tables  # noqa: F401, required for SQLModel to work properly
-
-
-class MockDatabaseManager:
-    """Mock version of DatabaseManager."""
-
-    _persistent_session: Session | None = None
-
-    def __init__(self) -> None:
-        """Create a new instance of the MockDatabaseManager."""
-        self.engine = create_engine("duckdb:///:memory:")
-        self._session_instance = Session(self.engine, close_resets_only=False)
-        # Initialize tables
-        SQLModel.metadata.create_all(self.engine)
-
-    @contextmanager
-    def session(self) -> Generator[Session, None, None]:
-        """Return the database session."""
-        try:
-            yield self._session_instance
-            if not self._session_instance.in_transaction():
-                self._session_instance.commit()
-        except Exception:
-            self._session_instance.rollback()
-            raise
-        finally:
-            self._session_instance.close()
-
-    def persistent_session(self) -> Session:
-        """Create a persistent session."""
-        if self._persistent_session is None:
-            self._persistent_session = Session(self.engine, close_resets_only=False)
-        return self._persistent_session
-
-
-class DatabaseManager:
-    """Manages database connections and ensures proper resource handling."""
-
-    _instance: DatabaseManager | None = None
-    engine: Engine | None = None
-    _persistent_session: Session | None = None
-
-    @staticmethod
-    def database_exists(db_file: str) -> bool:
-        """Check if database file exists.
-
-        Args:
-            db_file: Path to the database file
-
-        Returns:
-            True if database file exists, False otherwise
-        """
-        return os.path.exists(db_file)
-
-    @staticmethod
-    def cleanup_database(db_file: str) -> None:
-        """Delete database file if it exists.
-
-        Args:
-            db_file: Path to the database file to delete
-        """
-        if DatabaseManager.database_exists(db_file):
-            os.remove(db_file)
-            logging.info(f"Deleted existing database: {db_file}")
-
-    def __new__(
-        cls, db_file: str = "lightly_studio.db", cleanup_existing: bool = False
-    ) -> DatabaseManager:
-        """Create a new instance of the DatabaseManager.
-
-        Args:
-            db_file: Path to the database file
-            cleanup_existing: If True, deletes existing database
-            before creating a new one
-
-        Returns:
-            DatabaseManager instance
-        """
-        if cleanup_existing:
-            cls.cleanup_database(db_file)
-
-        if cls._instance is None:
-            cls._instance = super().__new__(cls)
-            # File-based DuckDB
-            cls._instance.engine = create_engine(f"duckdb:///{db_file}")
-            # Initialize tables
-            SQLModel.metadata.create_all(cls._instance.engine)
-        return cls._instance
-
-    @contextmanager
-    def session(self) -> Generator[Session, None, None]:
-        """Create a new database session."""
-        session = Session(self.engine, close_resets_only=False)
-        try:
-            yield session
-            session.commit()
-        except Exception:
-            session.rollback()
-            raise
-        finally:
-            session.close()
-
-    def persistent_session(self) -> Session:
-        """Create a persistent session."""
-        if self._persistent_session is None:
-            # TODO(Michal, 08/2025): Consider setting close_resets_only=True
-            # before the release. The current solution is more strict and prevents
-            # bugs but it might be too restrictive for users.
-            self._persistent_session = Session(self.engine, close_resets_only=False)
-        return self._persistent_session
-
-
-# Global instance
-db_manager = DatabaseManager(cleanup_existing=True)
-
-
-# For FastAPI dependency injection
-def get_session() -> Generator[Session, None, None]:
-    """Yield a new session for database operations."""
-    with db_manager.session() as session:
-        yield session

lightly_studio/api/routes/api/annotation_task.py

@@ -1,38 +0,0 @@
-"""API endpoints for annotation tasks."""
-
-from typing import List
-from uuid import UUID
-
-from fastapi import APIRouter, Depends, HTTPException, status
-from sqlmodel import Session
-
-from lightly_studio.api.db import get_session
-from lightly_studio.models.annotation_task import AnnotationTaskTable
-from lightly_studio.resolvers import annotation_task_resolver
-
-router = APIRouter(prefix="/annotationtasks", tags=["annotationtasks"])
-
-
-@router.get("/", response_model=List[AnnotationTaskTable])
-def get_annotation_tasks(
-    session: Session = Depends(get_session),  # noqa: B008
-) -> List[AnnotationTaskTable]:
-    """Get all annotation tasks."""
-    return annotation_task_resolver.get_all(session=session)
-
-
-@router.get("/{annotation_task_id}", response_model=AnnotationTaskTable)
-def get_annotation_task(
-    annotation_task_id: UUID,
-    session: Session = Depends(get_session),  # noqa: B008
-) -> AnnotationTaskTable:
-    """Get an annotation task by ID."""
-    task = annotation_task_resolver.get_by_id(
-        session=session, annotation_task_id=annotation_task_id
-    )
-    if task is None:
-        raise HTTPException(
-            status_code=status.HTTP_404_NOT_FOUND,
-            detail=f"Annotation task with ID {annotation_task_id} not found",
-        )
-    return task

lightly_studio/api/routes/api/metrics.py

@@ -1,80 +0,0 @@
-"""This module contains the API routes for computing detection metrics."""
-
-from __future__ import annotations
-
-from uuid import UUID
-
-from fastapi import APIRouter, Depends
-from pydantic import BaseModel
-from sqlmodel import Session
-from typing_extensions import Annotated
-
-from lightly_studio.api.db import get_session
-from lightly_studio.metrics.detection.map import (
-    DetectionMetricsMAP,
-    calculate_map_metric,
-)
-from lightly_studio.resolvers import (
-    annotation_label_resolver,
-    annotation_resolver,
-)
-from lightly_studio.resolvers.annotations.annotations_filter import (
-    AnnotationsFilter,
-)
-
-metrics_router = APIRouter()
-
-SessionDep = Annotated[Session, Depends(get_session)]
-
-
-class DetectionMetricsMAPRequest(BaseModel):
-    """Request for computing the MAP detection metric."""
-
-    dataset_id: UUID
-    ground_truth_task_id: UUID
-    prediction_task_id: UUID
-    tag_id: UUID | None = None
-
-
-@metrics_router.post("/metrics/compute/detection/map", response_model=DetectionMetricsMAP)
-def compute_detection_map(
-    request_body: DetectionMetricsMAPRequest,
-    session: SessionDep,
-) -> DetectionMetricsMAP:
-    """Compute the MAP detection metric."""
-    ground_truth_annotations = annotation_resolver.get_all(
-        session=session,
-        filters=AnnotationsFilter(
-            dataset_ids=[request_body.dataset_id],
-            annotation_task_ids=[request_body.ground_truth_task_id],
-            sample_tag_ids=[request_body.tag_id] if request_body.tag_id else None,
-        ),
-    ).annotations
-    prediction_annotations = annotation_resolver.get_all(
-        session=session,
-        filters=AnnotationsFilter(
-            dataset_ids=[request_body.dataset_id],
-            annotation_task_ids=[request_body.prediction_task_id],
-            sample_tag_ids=[request_body.tag_id] if request_body.tag_id else None,
-        ),
-    ).annotations
-
-    metrics_result = calculate_map_metric(
-        pred_annotations=prediction_annotations,
-        gt_annotations=ground_truth_annotations,
-    )
-
-    # Rename per-class metrics to use label names
-    raw_map_pc = metrics_result.map_per_class
-    if raw_map_pc:
-        id2name = annotation_label_resolver.names_by_ids(
-            session=session, ids=[UUID(k) for k in raw_map_pc]
-        )
-        metrics_result.map_per_class = {id2name.get(k, k): v for k, v in raw_map_pc.items()}
-    raw_mar100_pc = metrics_result.mar_100_per_class
-    if raw_mar100_pc:
-        id2name = annotation_label_resolver.names_by_ids(
-            session=session, ids=[UUID(k) for k in raw_mar100_pc]
-        )
-        metrics_result.mar_100_per_class = {id2name.get(k, k): v for k, v in raw_mar100_pc.items()}
-    return metrics_result