lessPython 0.3.0__py3-none-any.whl → 0.3.1__py3-none-any.whl

lessPy/profile_plotly.py

@@ -21,6 +21,7 @@ import plotly.graph_objects as go
 
 from .utils import get_option
 from .plotly_utils import (
+    as_plotly_color,
     axis_num, facet_layout, make_trans, plot_border, plotly_style,
     to_hex, y_grid,
 )
@@ -75,9 +76,9 @@ def profile_facet_plotly(cells, x_levels, series, y_tick, y_lab_tick,
                 marker=dict(symbol="circle", size=px,
                             sizemode="diameter",
                             color=make_trans(fills[j], 1),
-                            line=dict(color=to_hex(fills[j]),
+                            line=dict(color=as_plotly_color(fills[j]),
                                       width=1)),
-                line=dict(color=to_hex(fills[j]), width=ln_width),
+                line=dict(color=as_plotly_color(fills[j]), width=ln_width),
                 hovertemplate=hover,
                 showlegend=grouped and i == 0,
             ))
@@ -114,8 +115,8 @@ def profile_facet_plotly(cells, x_levels, series, y_tick, y_lab_tick,
                     yanchor="top", font=dict(size=title_size))
                if main else None),
         template=None,
-        plot_bgcolor=to_hex(style_opts["panel_fill"]),
-        paper_bgcolor=to_hex(style_opts["window_fill"]),
+        plot_bgcolor=as_plotly_color(style_opts["panel_fill"]),
+        paper_bgcolor=as_plotly_color(style_opts["window_fill"]),
         **axes,
     )
     return fig

lessPy/radar_plotly.py

@@ -20,6 +20,7 @@ import plotly.graph_objects as go
 
 from .utils import get_option
 from .plotly_utils import (
+    as_plotly_color,
     BASE_COLORS, facet_layout, make_trans, plotly_style, to_hex,
 )
 
@@ -182,7 +183,7 @@ def radar_plotly(x=None, x_name=None, by_name=None, main=None,
             text=main, x=0.5, xanchor="center",
             y=0.97, yanchor="top",
             font=dict(size=title_size,
-                      color=to_hex(get_option("lab_color",
+                      color=as_plotly_color(get_option("lab_color",
                                               "black")))),
         margin=dict(t=round(title_size * 2.2), b=10,
                     l=20 if n_fac == 1 else r_margin,
@@ -191,11 +192,11 @@ def radar_plotly(x=None, x_name=None, by_name=None, main=None,
         annotations=anns,
         legend=dict(
             x=1.02, xanchor="left", y=1.0, yanchor="top",
-            bordercolor=to_hex(style_opts["panel_border"]),
+            bordercolor=as_plotly_color(style_opts["panel_border"]),
             borderwidth=1,
             font=dict(size=round(18 * ax_cex)),
         ),
         template=None,
-        paper_bgcolor=to_hex(style_opts["window_fill"]),
+        paper_bgcolor=as_plotly_color(style_opts["window_fill"]),
     )
     return fig

lessPy/simCImean.py

@@ -15,7 +15,7 @@
 
 import numpy as np
 
-from .utils import fmt, show_plots
+from .utils import fmt, file_output, show_plots
 
 
 class SimCImeanResults:
@@ -163,3 +163,7 @@ def _report(ns, n, ymean, ysd, se, E, lb, ub, hit, mu, sigma, cl,
     print(f"   Mean: {fmt(ymean.mean(), d2):>{w}}")
     print(f"Std Dev: {fmt(ymean.std(ddof=1), d2):>{w}}")
     print()
+
+
+# pdf_file= and png_file= write the figures, as lessR's pdf_file=
+simCImean = file_output(simCImean)

lessPy/simCLT.py

@@ -21,7 +21,7 @@
 
 import numpy as np
 
-from .utils import fmt, show_plots
+from .utils import fmt, file_output, show_plots
 
 _GHOST = "#F8F8FF"
 _STEEL = "#A2B5CD"          # lightsteelblue3
@@ -263,3 +263,7 @@ def _report(dist, mu, sigma, skew, med, ns, n, mx, sx, ymean,
             print(f" Mean: {fmt(ymean[i], digits_d)}")
             print(f" Rounded Data Values: {vals}")
     print()
+
+
+# pdf_file= and png_file= write the figures, as lessR's pdf_file=
+simCLT = file_output(simCLT)

lessPy/simFlips.py

@@ -12,7 +12,7 @@
 
 import numpy as np
 
-from .utils import fmt, show_plots
+from .utils import fmt, file_output, show_plots
 
 
 class SimFlipsResults:
@@ -102,3 +102,7 @@ def _plot(n, flips, ybar, prob, grid, show_flips, show_title,
         title=dict(text=title, x=0.5, xanchor="center",
                    font=dict(size=12)))
     return fig
+
+
+# pdf_file= and png_file= write the figures, as lessR's pdf_file=
+simFlips = file_output(simFlips)

lessPy/simMeans.py

@@ -16,7 +16,7 @@
 
 import numpy as np
 
-from .utils import fmt, show_plots
+from .utils import fmt, file_output, show_plots
 
 
 class SimMeansResults:
@@ -144,3 +144,7 @@ def _report(ns, n, o, ymean, ysd, data, mu, sigma, max_data,
           "    Direct estimate of the standard error of the "
           "sample mean")
     print()
+
+
+# pdf_file= and png_file= write the figures, as lessR's pdf_file=
+simMeans = file_output(simMeans)

lessPy/style.py

@@ -116,10 +116,17 @@ def style(theme=None, sub_theme=None, set=None, get=False, reset=True,
 
     for k, v in settings.items():
         utils._OPTIONS[k] = v
+    # the line that connects the points of a single series takes
+    #   segment_color only when it is given, otherwise color. A
+    #   theme, applied above, starts from neither. R analog:
+    #   style() option segment_color_set
+    if "segment_color" in settings:
+        utils._OPTIONS["segment_color_set"] = True
 
     if get:
         return {k: copy.deepcopy(utils._OPTIONS.get(k))
-                for k in sorted(keys | {"theme", "sub_theme"})}
+                for k in sorted(keys | {"theme", "sub_theme",
+                                        "segment_color_set"})}
     return None
 
 

lessPy/sunflower_plotly.py

@@ -16,6 +16,7 @@ import numpy as np
 import plotly.graph_objects as go
 
 from .plotly_utils import (
+    as_plotly_color,
     axis_format, axis_num, facet_fig, facet_panels, finish_facet,
     make_trans, plot_border, plotly_style, to_hex, x_grid,
 )
@@ -57,10 +58,10 @@ def _panel_traces(x, y, xr, yr, w_px, h_px, fill, color, pt_size,
     px = max(3.0, 5.5 * float(pt_size))
     return [
         go.Scatter(x=sx, y=sy, mode="lines",
-                   line=dict(color=to_hex(color), width=1),
+                   line=dict(color=as_plotly_color(color), width=1),
                    hoverinfo="skip", showlegend=False),
         go.Scatter(x=xx, y=yy, mode="markers",
-                   marker=dict(size=px, color=to_hex(fill),
+                   marker=dict(size=px, color=as_plotly_color(fill),
                                line=dict(width=0)),
                    customdata=cnt, hovertemplate=hover,
                    showlegend=False)]
@@ -104,13 +105,13 @@ def sunflower_plotly(x, y, x_lab, y_lab, main=None, facet=None,
                                                  axis_fmt, axis_y_pre))
         ax_x.update(range=list(xr))
         ax_y.update(range=list(yr), showgrid=True,
-                    gridcolor=to_hex(style_opts["grid_col"]),
+                    gridcolor=as_plotly_color(style_opts["grid_col"]),
                     gridwidth=1, griddash="dot")
         fig.update_layout(
             xaxis=ax_x, yaxis=ax_y, template=None,
             shapes=x_grid(axT1) + plot_border(),
-            plot_bgcolor=to_hex(style_opts["panel_fill"]),
-            paper_bgcolor=to_hex(style_opts["window_fill"]))
+            plot_bgcolor=as_plotly_color(style_opts["panel_fill"]),
+            paper_bgcolor=as_plotly_color(style_opts["window_fill"]))
     else:
         labels, pos, sel, n_row_g, n_col = facet_panels(
             facet, facet_order, facet2, facet2_order, facet_name,

lessPy/ttest.py

@@ -24,7 +24,7 @@ import numpy as np
 import pandas as pd
 
 from .Regression import _getdigits
-from .utils import fmt, get_column, get_option, show_plots
+from .utils import fmt, get_column, get_option, file_output, show_plots
 
 
 class ttestResults:
@@ -572,7 +572,7 @@ def _kde(v):
 def _two_group_plot(YA, YB, Ynm, X1nm, X2nm, m1, m2, d):
     import plotly.graph_objects as go
     from .plotly_utils import (
-        BASE_COLORS, axis_format, axis_num, make_trans,
+        as_plotly_color, BASE_COLORS, axis_format, axis_num, make_trans,
         plot_border, plotly_style, to_hex, x_grid)
     from .utils import pretty
     style = plotly_style()
@@ -595,8 +595,8 @@ def _two_group_plot(YA, YB, Ynm, X1nm, X2nm, m1, m2, d):
     fig.update_layout(
         xaxis=ax_x, yaxis=ax_y,
         shapes=x_grid(axT1) + plot_border(), template=None,
-        plot_bgcolor=to_hex(style["panel_fill"]),
-        paper_bgcolor=to_hex(style["window_fill"]),
+        plot_bgcolor=as_plotly_color(style["panel_fill"]),
+        paper_bgcolor=as_plotly_color(style["window_fill"]),
         legend=dict(title=dict(text=str(X1nm) + " / " + str(X2nm))),
         title=dict(text="Two-Group Density Plot", x=0.5,
                    xanchor="center",
@@ -608,7 +608,7 @@ def _two_group_plot(YA, YB, Ynm, X1nm, X2nm, m1, m2, d):
 def _one_group_plot(Y, Ynm, m, lb, ub, d, paired):
     import plotly.graph_objects as go
     from .plotly_utils import (
-        BASE_COLORS, axis_format, axis_num, make_trans,
+        as_plotly_color, BASE_COLORS, axis_format, axis_num, make_trans,
         plot_border, plotly_style, to_hex, x_grid)
     from .utils import pretty
     style = plotly_style()
@@ -616,13 +616,13 @@ def _one_group_plot(Y, Ynm, m, lb, ub, d, paired):
     c = BASE_COLORS[0]
     fig = go.Figure()
     fig.add_trace(go.Scatter(
-        x=xs, y=ys, mode="lines", line=dict(color=to_hex(c),
+        x=xs, y=ys, mode="lines", line=dict(color=as_plotly_color(c),
                                             width=2),
         fill="tozeroy", fillcolor=make_trans(c, 0.85),
         hoverinfo="x", showlegend=False))
     ym = float(np.interp(m, xs, ys))
     fig.add_shape(type="line", x0=m, x1=m, y0=0, y1=ym,
-                  line=dict(color=to_hex("gray50"), width=1))
+                  line=dict(color=as_plotly_color("gray50"), width=1))
     axT1 = pretty(float(xs.min()), float(xs.max()))
     xlab = ("Differences of Matched Pairs" if paired else Ynm)
     ax_x = axis_num(xlab, axT1, axis_format(axT1, d))
@@ -631,11 +631,15 @@ def _one_group_plot(Y, Ynm, m, lb, ub, d, paired):
     fig.update_layout(
         xaxis=ax_x, yaxis=ax_y,
         shapes=x_grid(axT1) + plot_border(), template=None,
-        plot_bgcolor=to_hex(style["panel_fill"]),
-        paper_bgcolor=to_hex(style["window_fill"]),
+        plot_bgcolor=as_plotly_color(style["panel_fill"]),
+        paper_bgcolor=as_plotly_color(style["window_fill"]),
         title=dict(
             text="One-Group Density Plot", x=0.5,
             xanchor="center",
             font=dict(size=round(16 * get_option("main_size",
                                                  1)))))
     return fig
+
+
+# pdf_file= and png_file= write the figures, as lessR's pdf_file=
+ttest = file_output(ttest)

lessPy/utils.py

@@ -310,3 +310,106 @@ def show_plots(result):
             warnings.warn(f"figures not displayed ({e}); they are "
                           "in .plots, show one with .show()")
     return result
+
+
+def _figures_of(out, names=None):
+    """The figures a function returned, keyed by the file-name
+    suffix: an analysis result's .plots (or .attrs["plots"]) by plot
+    name, a list of Figures by variable name (X() of a list), and a
+    single Figure by no suffix."""
+    if hasattr(out, "write_image"):
+        return {"": out}
+    if isinstance(out, (list, tuple)):
+        keys = ([str(v) for v in names] if names
+                and len(names) == len(out)
+                else [str(i + 1) for i in range(len(out))])
+        return {k: f for k, f in zip(keys, out)
+                if hasattr(f, "write_image")}
+    attrs = getattr(out, "attrs", None)
+    plots = (attrs.get("plots") if isinstance(attrs, dict)
+             else getattr(out, "plots", None))
+    return {k: f for k, f in (plots or {}).items() if f is not None}
+
+
+def write_figures(out, stem, ext, names=None):
+    """Write the returned figures to ext ("pdf", "png") files named
+    from stem, as lessR's pdf_file=: one figure is stem.ext, several
+    are stem_<name>.ext. Reports the files as lessR's .showfile();
+    on Colab also downloads them to the user's computer. A write
+    failure warns and leaves the analysis result intact."""
+    import os
+    import sys
+    import warnings
+    stem = str(stem)
+    if stem.lower().endswith("." + ext):
+        stem = stem[:-len(ext) - 1]
+    figs = _figures_of(out, names)
+    if not figs:
+        return
+    if len(figs) == 1:
+        figs = {"": next(iter(figs.values()))}
+    dir_nm = os.path.dirname(stem)
+    if dir_nm and not os.path.isdir(dir_nm):
+        warnings.warn(f"{ext} file not written: no folder {dir_nm}",
+                      stacklevel=3)
+        return
+    files = []
+    try:
+        for key, fig in figs.items():
+            fname = f"{stem}_{key}.{ext}" if key else f"{stem}.{ext}"
+            fig.write_image(fname, scale=2 if ext == "png" else 1)
+            files.append(fname)
+    except Exception as e:
+        warnings.warn(
+            f"{ext} file not written ({e})\nWriting {ext} files needs "
+            "the png extra: pip install \"lessPython[png]\", then "
+            "plotly_get_chrome -y once (on Colab: !plotly_get_chrome "
+            "-y).", stacklevel=3)
+    if not files:
+        return
+    where = ("written at the current working directory"
+             if not dir_nm else "written")
+    workdir = os.getcwd() if not dir_nm else dir_nm
+    word = "file" if len(files) == 1 else "files"
+    print(f"\nThe {ext} {word} {where}")
+    for f in files:
+        print(f"        {os.path.basename(f)}")
+    print(f"    in:  {workdir}\n")
+    if "google.colab" in sys.modules:
+        try:
+            from google.colab import files as _colab_files
+            for f in files:
+                _colab_files.download(f)
+        except Exception:
+            pass
+
+
+def file_output(func):
+    """Wrap a function that returns figures so pdf_file= and
+    png_file= write them to files, as lessR's pdf_file=: the file
+    name, or with several figures the stem of the names,
+    stem_<plot>.ext. For a list of x variables (X()), each file is
+    named by its variable. As in lessR, True is refused: the name
+    is always given, so a second analysis cannot overwrite the
+    files of the first under a fixed name."""
+    import functools
+
+    @functools.wraps(func)
+    def wrapper(*args, pdf_file=None, png_file=None, **kwargs):
+        for given, prm in ((pdf_file, "pdf_file"), (png_file, "png_file")):
+            if isinstance(given, bool) and given:
+                raise ValueError(
+                    f"{prm} takes the stem of the file names, such as "
+                    f"{prm}=\"myReg\", which for Regression() writes "
+                    "one file per chart, such as "
+                    "myReg_scatter_matrix." + prm[:3] + ".")
+        out = func(*args, **kwargs)
+        if pdf_file or png_file:
+            xs = kwargs.get("x", args[0] if args else None)
+            names = xs if isinstance(xs, (list, tuple)) else None
+            for given, ext in ((pdf_file, "pdf"), (png_file, "png")):
+                if given:
+                    write_figures(out, given, ext, names)
+        return out
+
+    return wrapper

lessPy/vbs_plotly.py

@@ -42,7 +42,7 @@ import plotly.graph_objects as go
 from .plotly_utils import (
     as_plotly_color, axis_format, axis_num, get_tick_fmt,
     make_trans,
-    plot_border, plotly_style, sym_at, to_hex, x_grid,
+    plot_border, plotly_style, marks, to_hex, x_grid,
 )
 from .utils import band_width, fmt, get_option, kde, pretty
 
@@ -259,7 +259,7 @@ def vbs_plotly(x, x_name=None, vbs_plot="vbs",
         box_fill = get_option("box_fill", "#419BD2")
     if box_color is None:
         box_color = get_option("box_color", "gray15")
-    box_color = to_hex(box_color)
+    box_color = as_plotly_color(box_color)
 
     fig = go.Figure()
     val_fmt = get_tick_fmt(x, digits_d)
@@ -347,7 +347,7 @@ def vbs_plotly(x, x_name=None, vbs_plot="vbs",
                 y=np.concatenate([yc + half,
                                   yc - half[::-1]]),
                 mode="lines",
-                line=dict(color=to_hex(violin_color), width=1),
+                line=dict(color=as_plotly_color(violin_color), width=1),
                 fill="toself",
                 fillcolor=as_plotly_color(violin_fill),
                 hoverinfo="skip", showlegend=False,
@@ -408,21 +408,22 @@ def vbs_plotly(x, x_name=None, vbs_plot="vbs",
                                        len(pts))
                 # by groups differ by color only; shape= (scalar or
                 # per-group vector) overrides for every group
-                sym = "circle" if shape is None else sym_at(shape, i)
                 hover = f"{x_lab}: {vpart}"
                 if nm is not None:
                     hover += f"<br>{by_name}: {nm}"
                 hover += lvl_part
                 fig.add_trace(go.Scatter(
-                    x=pts, y=yj, mode="markers",
+                    x=pts, y=yj,
                     name=None if nm is None else str(nm),
-                    marker=dict(
-                        symbol=sym, size=px,
-                        color=make_trans(_col_for(pt_fill, i),
-                                         1 - pt_trans),
-                        line=dict(
-                            color=to_hex(_col_for(pt_color, i)),
-                            width=0.5)),
+                    **marks("circle" if shape is None else shape, i,
+                            "markers", dict(
+                                size=px,
+                                color=make_trans(_col_for(pt_fill, i),
+                                                 1 - pt_trans),
+                                line=dict(
+                                    color=as_plotly_color(
+                                        _col_for(pt_color, i)),
+                                    width=0.5))),
                     hovertemplate=hover + "<extra></extra>",
                     showlegend=nm is not None and ui == 0,
                 ))
@@ -455,8 +456,8 @@ def vbs_plotly(x, x_name=None, vbs_plot="vbs",
                         mode="markers",
                         marker=dict(
                             symbol=out_shape, size=px_out,
-                            color=to_hex(o_fill),
-                            line=dict(color=to_hex(o_color),
+                            color=as_plotly_color(o_fill),
+                            line=dict(color=as_plotly_color(o_color),
                                       width=1)),
                         hovertemplate=hover + "<extra></extra>",
                         showlegend=False,
@@ -476,7 +477,7 @@ def vbs_plotly(x, x_name=None, vbs_plot="vbs",
                 keep_i = cand[np.argsort(-np.abs(xu[cand]),
                                          kind="stable")][:out_cut]
                 id_font = dict(
-                    color=to_hex(get_option("ID_color",
+                    color=as_plotly_color(get_option("ID_color",
                                             "gray50")),
                     size=max(8, round(float(ID_size) * 14)))
                 for ii in keep_i:
@@ -497,8 +498,8 @@ def vbs_plotly(x, x_name=None, vbs_plot="vbs",
     annotations = []
     if n_fac > 1:               # shaded strip label per band
         s_fill = as_plotly_color(get_option("strip_fill"))
-        s_line = to_hex(get_option("strip_color"))
-        s_text = to_hex(get_option("strip_text_color"))
+        s_line = as_plotly_color(get_option("strip_color"))
+        s_text = as_plotly_color(get_option("strip_text_color"))
         s_font = round(14 * get_option("axis_size", 0.9))
         strip_items = [(u["yc"] + _STRIP[0],
                         u["yc"] + _STRIP[1], u["strip"])
@@ -530,22 +531,22 @@ def vbs_plotly(x, x_name=None, vbs_plot="vbs",
         shapes=shapes,
         annotations=annotations,
         template=None,
-        plot_bgcolor=to_hex(style_opts["panel_fill"]),
-        paper_bgcolor=to_hex(style_opts["window_fill"]),
+        plot_bgcolor=as_plotly_color(style_opts["panel_fill"]),
+        paper_bgcolor=as_plotly_color(style_opts["window_fill"]),
         height=(450 if n_fac == 1
                 else 120 + 190 * n_fac
                 + 40 * len(sec_strips)),
     )
     if n_grp > 1:               # lattice key: top, one row
-        leg_color = to_hex(style_opts["lab_color"])
+        leg_color = as_plotly_color(style_opts["lab_color"])
         fig.update_layout(legend=dict(
             orientation="h",
             x=0.5, xanchor="center", y=1.02, yanchor="bottom",
             font=dict(size=round(14 * get_option("axis_size",
                                                  0.9)),
                       family="Arial", color=leg_color),
-            bgcolor=to_hex(style_opts["window_fill"]),
-            bordercolor=to_hex("gray80"), borderwidth=1,
+            bgcolor=as_plotly_color(style_opts["window_fill"]),
+            bordercolor=as_plotly_color("gray80"), borderwidth=1,
             itemsizing="constant",
         ))
     if main:

{lesspython-0.3.0.dist-info → lesspython-0.3.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: lessPython
-Version: 0.3.0
+Version: 0.3.1
 Summary: Python port of R's lessR: analytic-view visualizations, statistical models, and data utilities, rendered with plotly
 Author-email: "David W. Gerbing" <gerbing@pdx.edu>
 License-Expression: GPL-2.0-or-later
@@ -119,6 +119,13 @@ when the analysis runs, even when the result is assigned, as
 `r = lp.Regression(...)`. From a script, show one with
 `r.plots["scatter"].show()`.
 
+Every function that draws also takes `pdf_file=` and `png_file=`
+(needs the png extra, `pip install "lessPython[png]"`, then
+`plotly_get_chrome -y` once). A name such as `png_file="reg"`
+names the file, or with several figures is the stem of each
+name (`reg_scatter_matrix.png`), as lessR's `pdf_file=`. On Colab
+the files also download to your computer.
+
 ## Development install
 
 ```

lesspython-0.3.1.dist-info/RECORD

@@ -0,0 +1,89 @@
+lessPy/ANOVA.py,sha256=p0IUM004vGTKEHl_VAgyf-f_1NnklR8KWx_YdsNOerU,30437
+lessPy/Chart.py,sha256=MYM4Ji5DHstRg2bp9sMjDvCDWLf-cHW9PLjzG6zel2U,90920
+lessPy/Correlation.py,sha256=QdeSiVmaDjE_iNPvAsoZx5a1xBJ1g1t-ZtZrW2zDimU,10331
+lessPy/Flows.py,sha256=5wfIZQGlOsALFinZDpioIR79uJfqn3YrNBLHFb8JGNk,4898
+lessPy/Logit.py,sha256=zuDxYgBjSSt6rM5EIhBA5Ug5p26o4MforABOiE4MkJU,25426
+lessPy/Prop_test.py,sha256=mSYiQdTN7gpF5oMBAjFgicH9-YarJojgAEBnxQg17Og,10452
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@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
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+Generator: setuptools (84.2.1)
 Root-Is-Purelib: true
 Tag: py3-none-any