large-image-source-tifffile 1.31.2.dev102__py3-none-any.whl → 1.31.2.dev104__py3-none-any.whl

large_image_source_tifffile/__init__.py

@@ -2,6 +2,7 @@ import json
 import logging
 import math
 import os
+import re
 import threading
 from importlib.metadata import PackageNotFoundError
 from importlib.metadata import version as _importlib_version
@@ -325,9 +326,28 @@ class TifffileFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
     def _handle_imagej(self):
         try:
             ijm = self._tf.pages[0].tags['IJMetadata'].value
+            info = None
+            if 'Info' in ijm:
+                info = {l.split('=', 1)[0].strip(): l.split('=', 1)[1].strip()
+                        for l in ijm['Info'].replace('\r', '\n').split('\n') if '=' in l}
+                for k in list(info.keys()):
+                    mat = re.match(r'^(.+) #(\d+)$', k)
+                    if mat:
+                        key = mat.group(1)
+                        idx = int(mat.group(2))
+                        if key not in info or (
+                                isinstance(info[key], list) and len(info[key]) == idx - 1):
+                            info.setdefault(key, [])
+                            info[key].append(info[k])
+                            info.pop(k)
             if (ijm['Labels'] and len(ijm['Labels']) == self._framecount and
                     not getattr(self, '_channels', None)):
                 self._channels = ijm['Labels']
+            if ((not getattr(self, '_channels', None) or
+                    all(label.startswith('c:') for label in self._channels)) and
+                    info and isinstance(info.get('Biomarker'), list) and
+                    len(info['Biomarker']) == self._framecount):
+                self._channels = info['Biomarker']
         except Exception:
             pass
 

{large_image_source_tifffile-1.31.2.dev102.dist-info → large_image_source_tifffile-1.31.2.dev104.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.2
+Metadata-Version: 2.4
 Name: large-image-source-tifffile
-Version: 1.31.2.dev102
+Version: 1.31.2.dev104
 Summary: A tifffile tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -19,12 +19,12 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
 License-File: LICENSE
-Requires-Dist: large-image>=1.31.2.dev102
+Requires-Dist: large-image>=1.31.2.dev104
 Requires-Dist: dask[array]
 Requires-Dist: tifffile[all]
 Requires-Dist: zarr
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.31.2.dev102; extra == "girder"
+Requires-Dist: girder-large-image>=1.31.2.dev104; extra == "girder"
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier
@@ -33,6 +33,7 @@ Dynamic: description-content-type
 Dynamic: home-page
 Dynamic: keywords
 Dynamic: license
+Dynamic: license-file
 Dynamic: provides-extra
 Dynamic: requires-dist
 Dynamic: requires-python

large_image_source_tifffile-1.31.2.dev104.dist-info/RECORD

@@ -0,0 +1,8 @@
+large_image_source_tifffile/__init__.py,sha256=VonatC_zK_27_d6bkXu-W5QtYNuZV1wLw8oH_C1kieY,31310
+large_image_source_tifffile/girder_source.py,sha256=8YsxpSK_UzbAcpjn6fIMlgKye2FchkB8_HTSQV0FpRA,1064
+large_image_source_tifffile-1.31.2.dev104.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+large_image_source_tifffile-1.31.2.dev104.dist-info/METADATA,sha256=_KIlTmCfbjpA90ozNe5KCP8AotEReWOd8eunMFKgVtU,1430
+large_image_source_tifffile-1.31.2.dev104.dist-info/WHEEL,sha256=DK49LOLCYiurdXXOXwGJm6U4DkHkg4lcxjhqwRa0CP4,91
+large_image_source_tifffile-1.31.2.dev104.dist-info/entry_points.txt,sha256=aILCN5f7-Zj8-WRXcABxCQvqJv9VLTvqRhZ_7HEyokc,190
+large_image_source_tifffile-1.31.2.dev104.dist-info/top_level.txt,sha256=feOAsix2Rzy6mjy2Ua-N0-L6tlKsgvLdRhO6Hd8_ZFs,28
+large_image_source_tifffile-1.31.2.dev104.dist-info/RECORD,,

{large_image_source_tifffile-1.31.2.dev102.dist-info → large_image_source_tifffile-1.31.2.dev104.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (76.0.0)
+Generator: setuptools (78.0.2)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

large_image_source_tifffile-1.31.2.dev102.dist-info/RECORD

@@ -1,8 +0,0 @@
-large_image_source_tifffile/__init__.py,sha256=WsyPJKR2Iij1V7maAfv4-m1xEhEUHLlRsO3qOK9IIWc,30244
-large_image_source_tifffile/girder_source.py,sha256=8YsxpSK_UzbAcpjn6fIMlgKye2FchkB8_HTSQV0FpRA,1064
-large_image_source_tifffile-1.31.2.dev102.dist-info/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-large_image_source_tifffile-1.31.2.dev102.dist-info/METADATA,sha256=MuWrufr40KWWUWOQcTEwVp4Cgtg4yHYd4yT3zadKr2Y,1408
-large_image_source_tifffile-1.31.2.dev102.dist-info/WHEEL,sha256=52BFRY2Up02UkjOa29eZOS2VxUrpPORXg1pkohGGUS8,91
-large_image_source_tifffile-1.31.2.dev102.dist-info/entry_points.txt,sha256=aILCN5f7-Zj8-WRXcABxCQvqJv9VLTvqRhZ_7HEyokc,190
-large_image_source_tifffile-1.31.2.dev102.dist-info/top_level.txt,sha256=feOAsix2Rzy6mjy2Ua-N0-L6tlKsgvLdRhO6Hd8_ZFs,28
-large_image_source_tifffile-1.31.2.dev102.dist-info/RECORD,,