large-image-source-tifffile 1.26.4.dev10__py3-none-any.whl → 1.26.4.dev14__py3-none-any.whl

large_image_source_tifffile/__init__.py

@@ -24,6 +24,13 @@ except PackageNotFoundError:
     pass
 
 
+class checkForMissingDataHandler(logging.Handler):
+    def emit(self, record):
+        msg = record.getMessage()
+        if 'Missing data are zeroed' in msg or 'OME series expected ' in msg:
+            raise TileSourceError(record.getMessage())
+
+
 def _lazyImport():
     """
     Import the tifffile module.  This is done when needed rather than in the
@@ -41,8 +48,13 @@ def _lazyImport():
             tifffile = None
             msg = 'tifffile module is too old.'
             raise TileSourceError(msg)
-        logging.getLogger('tifffile.tifffile').setLevel(logging.ERROR)
-        logging.getLogger('tifffile').setLevel(logging.ERROR)
+        # The missing data handler consumes most warnings, but throws if a
+        # warning about missing data occurs
+        # The tifffile.tifffile logger is in older versions of tifffile
+        logging.getLogger('tifffile.tifffile').setLevel(logging.WARNING)
+        logging.getLogger('tifffile.tifffile').addHandler(checkForMissingDataHandler())
+        logging.getLogger('tifffile').setLevel(logging.WARNING)
+        logging.getLogger('tifffile').addHandler(checkForMissingDataHandler())
 
 
 def et_findall(tag, text):
@@ -498,8 +510,6 @@ class TifffileFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
             if sidx not in self._zarrcache:
                 if len(self._zarrcache) > 10:
                     self._zarrcache = {}
-                if self.frames > 1:
-                    series.keyframe.nodata = None
                 za = zarr.open(series.aszarr(), mode='r')
                 hasgbs = hasattr(za[0], 'get_basic_selection')
                 self._zarrcache[sidx] = (za, hasgbs)

{large_image_source_tifffile-1.26.4.dev10.dist-info → large_image_source_tifffile-1.26.4.dev14.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-tifffile
-Version: 1.26.4.dev10
+Version: 1.26.4.dev14
 Summary: A tifffile tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -17,12 +17,12 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Requires-Python: >=3.8
 License-File: LICENSE
-Requires-Dist: large-image >=1.26.4.dev10
+Requires-Dist: large-image >=1.26.4.dev14
 Requires-Dist: dask[array]
 Requires-Dist: tifffile[all]
 Requires-Dist: zarr
 Provides-Extra: girder
-Requires-Dist: girder-large-image >=1.26.4.dev10 ; extra == 'girder'
+Requires-Dist: girder-large-image >=1.26.4.dev14 ; extra == 'girder'
 
 A tifffile tilesource for large_image.
 

large_image_source_tifffile-1.26.4.dev14.dist-info/RECORD

@@ -0,0 +1,8 @@
+large_image_source_tifffile/__init__.py,sha256=7jHLRfFXszTDfTcD6aRylJthE03lK5FCHh4rKkHtHEw,24668
+large_image_source_tifffile/girder_source.py,sha256=8YsxpSK_UzbAcpjn6fIMlgKye2FchkB8_HTSQV0FpRA,1064
+large_image_source_tifffile-1.26.4.dev14.dist-info/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+large_image_source_tifffile-1.26.4.dev14.dist-info/METADATA,sha256=BQUv-6ALvL7meeapC-WjTCNRAJpvot6GkRfmPsKSIDc,1064
+large_image_source_tifffile-1.26.4.dev14.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+large_image_source_tifffile-1.26.4.dev14.dist-info/entry_points.txt,sha256=aILCN5f7-Zj8-WRXcABxCQvqJv9VLTvqRhZ_7HEyokc,190
+large_image_source_tifffile-1.26.4.dev14.dist-info/top_level.txt,sha256=feOAsix2Rzy6mjy2Ua-N0-L6tlKsgvLdRhO6Hd8_ZFs,28
+large_image_source_tifffile-1.26.4.dev14.dist-info/RECORD,,

large_image_source_tifffile-1.26.4.dev10.dist-info/RECORD

@@ -1,8 +0,0 @@
-large_image_source_tifffile/__init__.py,sha256=pLN0OWZoBhxJjNm0R29xNmJ61eQbMJe0tDuyvD6jB0E,24144
-large_image_source_tifffile/girder_source.py,sha256=8YsxpSK_UzbAcpjn6fIMlgKye2FchkB8_HTSQV0FpRA,1064
-large_image_source_tifffile-1.26.4.dev10.dist-info/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-large_image_source_tifffile-1.26.4.dev10.dist-info/METADATA,sha256=bkh5vkGMPSd3-FSIHCYW6OEvfEJ4Y1iyUfWwbYNVPjM,1064
-large_image_source_tifffile-1.26.4.dev10.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-large_image_source_tifffile-1.26.4.dev10.dist-info/entry_points.txt,sha256=aILCN5f7-Zj8-WRXcABxCQvqJv9VLTvqRhZ_7HEyokc,190
-large_image_source_tifffile-1.26.4.dev10.dist-info/top_level.txt,sha256=feOAsix2Rzy6mjy2Ua-N0-L6tlKsgvLdRhO6Hd8_ZFs,28
-large_image_source_tifffile-1.26.4.dev10.dist-info/RECORD,,