large-image-source-openslide 1.28.3.dev46__py3-none-any.whl → 1.29.0__py3-none-any.whl

large_image_source_openslide/__init__.py

@@ -154,6 +154,30 @@ class OpenslideFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
                 'svslevel': bestlevel,
                 'scale': scale,
             })
+        self._bounds = None
+        try:
+            bounds = {
+                'x': int(self._openslide.properties[openslide.PROPERTY_NAME_BOUNDS_X]),
+                'y': int(self._openslide.properties[openslide.PROPERTY_NAME_BOUNDS_Y]),
+                'width': int(self._openslide.properties[openslide.PROPERTY_NAME_BOUNDS_WIDTH]),
+                'height': int(self._openslide.properties[openslide.PROPERTY_NAME_BOUNDS_HEIGHT]),
+            }
+            if (
+                bounds['x'] >= 0 and bounds['width'] > 0 and
+                bounds['x'] + bounds['width'] <= self.sizeX and
+                bounds['y'] >= 0 and bounds['height'] > 0 and
+                bounds['y'] + bounds['height'] <= self.sizeY and
+                (bounds['width'] < self.sizeX or bounds['height'] < self.sizeY)
+            ):
+                self._bounds = bounds
+                self.sizeX, self.sizeY = bounds['width'], bounds['height']
+                prevlevels = self.levels
+                self.levels = int(math.ceil(max(
+                    math.log(float(self.sizeX) / self.tileWidth),
+                    math.log(float(self.sizeY) / self.tileHeight)) / math.log(2))) + 1
+                self._svslevels = self._svslevels[prevlevels - self.levels:]
+        except Exception:
+            pass
         self._populatedLevels = len({l['svslevel'] for l in self._svslevels})
 
     def _getTileSize(self):
@@ -292,6 +316,9 @@ class OpenslideFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
         scale = 2 ** (self.levels - 1 - z)
         offsetx = x * self.tileWidth * scale
         offsety = y * self.tileHeight * scale
+        if self._bounds is not None:
+            offsetx += self._bounds['x'] // svslevel['scale']
+            offsety += self._bounds['y'] // svslevel['scale']
         # We ask to read an area that will cover the tile at the z level.  The
         # scale we computed in the __init__ process for this svs level tells
         # how much larger a region we need to read.

{large_image_source_openslide-1.28.3.dev46.dist-info → large_image_source_openslide-1.29.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: large-image-source-openslide
-Version: 1.28.3.dev46
+Version: 1.29.0
 Summary: An Openslide tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -17,11 +17,11 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Requires-Python: >=3.8
 License-File: LICENSE
-Requires-Dist: large-image >=1.28.3.dev46
+Requires-Dist: large-image >=1.29.0
 Requires-Dist: openslide-python >=1.1.0
 Requires-Dist: tifftools >=1.2.0
 Provides-Extra: girder
-Requires-Dist: girder-large-image >=1.28.3.dev46 ; extra == 'girder'
+Requires-Dist: girder-large-image >=1.29.0 ; extra == 'girder'
 
 An Openslide tilesource for large_image.
 

large_image_source_openslide-1.29.0.dist-info/RECORD

@@ -0,0 +1,8 @@
+large_image_source_openslide/__init__.py,sha256=wDHAbKTIr0isHryi1TIZUPeASzkmpa36Yim6Uu3_uzQ,19961
+large_image_source_openslide/girder_source.py,sha256=ntLgOinO7xcO85wFbjx6XEBmTgEtx5cuPZ_K6wXZzqA,1199
+large_image_source_openslide-1.29.0.dist-info/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+large_image_source_openslide-1.29.0.dist-info/METADATA,sha256=ytHq4BWBtg2ZgQI5XPX6WOJBVENc9F6-c_bz6i3P36Y,1048
+large_image_source_openslide-1.29.0.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+large_image_source_openslide-1.29.0.dist-info/entry_points.txt,sha256=4Z5cf63yeesvHxiR9W1dY3rfz5_V4Ck2xYhPUp4A1qA,196
+large_image_source_openslide-1.29.0.dist-info/top_level.txt,sha256=wqaQQDWQl9a_l9s6n07tTxfjeEXePtHBhz1np6aUwQE,29
+large_image_source_openslide-1.29.0.dist-info/RECORD,,

large_image_source_openslide-1.28.3.dev46.dist-info/RECORD

@@ -1,8 +0,0 @@
-large_image_source_openslide/__init__.py,sha256=jus5yoUvyPHefCSHFvlFYJYx83KMlK-V7OViVyH9vAw,18512
-large_image_source_openslide/girder_source.py,sha256=ntLgOinO7xcO85wFbjx6XEBmTgEtx5cuPZ_K6wXZzqA,1199
-large_image_source_openslide-1.28.3.dev46.dist-info/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-large_image_source_openslide-1.28.3.dev46.dist-info/METADATA,sha256=8IH3737a2NjRNeYx2ek2YnPVODJbwYjKTq1ln8zTaGc,1066
-large_image_source_openslide-1.28.3.dev46.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-large_image_source_openslide-1.28.3.dev46.dist-info/entry_points.txt,sha256=4Z5cf63yeesvHxiR9W1dY3rfz5_V4Ck2xYhPUp4A1qA,196
-large_image_source_openslide-1.28.3.dev46.dist-info/top_level.txt,sha256=wqaQQDWQl9a_l9s6n07tTxfjeEXePtHBhz1np6aUwQE,29
-large_image_source_openslide-1.28.3.dev46.dist-info/RECORD,,