large-image-source-bioformats 1.32.4.dev8__py3-none-any.whl → 1.32.4.dev12__py3-none-any.whl

large_image_source_bioformats/__init__.py

@@ -234,6 +234,8 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
             raise TileSourceError(msg)
         self.addKnownExtensions()
 
+        self._tileLock = threading.RLock()
+
         try:
             with _javabridgeAttachLock:
                 javabridge.attach()
@@ -673,16 +675,19 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
                 javabridge.attach()
             try:
                 if width > 0 and height > 0:
-                    tile = self._bioimage.read(
-                        c=fc, z=fz, t=ft, series=fseries['series'][seriesLevel],
-                        rescale=False,  # return internal data types
-                        XYWH=(offsetx, offsety, width, height))
+                    with self._tileLock:
+                        tile = self._bioimage.read(
+                            c=fc, z=fz, t=ft,
+                            series=fseries['series'][seriesLevel],
+                            rescale=False,  # return internal data types
+                            XYWH=(offsetx, offsety, width, height))
                 else:
                     # We need the same dtype, so read 1x1 at 0x0
-                    tile = self._bioimage.read(
-                        c=fc, z=fz, t=ft, series=fseries['series'][seriesLevel],
-                        rescale=False,  # return internal data types
-                        XYWH=(0, 0, 1, 1))
+                    with self._tileLock:
+                        tile = self._bioimage.read(
+                            c=fc, z=fz, t=ft, series=fseries['series'][seriesLevel],
+                            rescale=False,  # return internal data types
+                            XYWH=(0, 0, 1, 1))
                     tile = np.zeros(tuple([0, 0] + list(tile.shape[2:])), dtype=tile.dtype)
                 format = TILE_FORMAT_NUMPY
             except javabridge.JavaException as exc:
@@ -742,10 +747,11 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
         with _javabridgeAttachLock:
             javabridge.attach()
         try:
-            image = self._bioimage.read(
-                series=series,
-                rescale=False,  # return internal data types
-                XYWH=(0, 0, info['sizeX'], info['sizeY']))
+            with self._tileLock:
+                image = self._bioimage.read(
+                    series=series,
+                    rescale=False,  # return internal data types
+                    XYWH=(0, 0, info['sizeX'], info['sizeY']))
         except javabridge.JavaException as exc:
             es = javabridge.to_string(exc.throwable)
             raise TileSourceError('Failed to get Bioformat series (%s, %r).' % (es, (

{large_image_source_bioformats-1.32.4.dev8.dist-info → large_image_source_bioformats-1.32.4.dev12.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: large-image-source-bioformats
-Version: 1.32.4.dev8
+Version: 1.32.4.dev12
 Summary: An bioformats tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -18,10 +18,10 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
 License-File: LICENSE
-Requires-Dist: large-image>=1.32.4.dev8
+Requires-Dist: large-image>=1.32.4.dev12
 Requires-Dist: python-bioformats>=1.5.2
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.32.4.dev8; extra == "girder"
+Requires-Dist: girder-large-image>=1.32.4.dev12; extra == "girder"
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier

large_image_source_bioformats-1.32.4.dev12.dist-info/RECORD

@@ -0,0 +1,8 @@
+large_image_source_bioformats/__init__.py,sha256=mO0uF67YoJSjzdvmdnzlw259FU7M6g7s-Iuj9X2QNdA,34886
+large_image_source_bioformats/girder_source.py,sha256=t0X1P0m4qMsRklpdxoPH-yqgHByMvQIzFJ4qRIUykVI,1355
+large_image_source_bioformats-1.32.4.dev12.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+large_image_source_bioformats-1.32.4.dev12.dist-info/METADATA,sha256=8LHa_OIWRpo_DDYAfN5l3reLw5-9JMZ37bUp_4kb2sg,1319
+large_image_source_bioformats-1.32.4.dev12.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
+large_image_source_bioformats-1.32.4.dev12.dist-info/entry_points.txt,sha256=xgIbKr53QhQkyRFkr87fkagfPWweeqhHHekUEMrcpF8,202
+large_image_source_bioformats-1.32.4.dev12.dist-info/top_level.txt,sha256=e0enjlcFXwPi638IhE71Rk5-eeriA7W3M3IsQ6yH3RI,30
+large_image_source_bioformats-1.32.4.dev12.dist-info/RECORD,,

large_image_source_bioformats-1.32.4.dev8.dist-info/RECORD

@@ -1,8 +0,0 @@
-large_image_source_bioformats/__init__.py,sha256=ufynSkQJtB5ReNIAOE9srTExVFK5NL4GBUzi_2LiUUA,34651
-large_image_source_bioformats/girder_source.py,sha256=t0X1P0m4qMsRklpdxoPH-yqgHByMvQIzFJ4qRIUykVI,1355
-large_image_source_bioformats-1.32.4.dev8.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-large_image_source_bioformats-1.32.4.dev8.dist-info/METADATA,sha256=40pAIl5zEpfjbDrqCnSHpi3fxQJG9g1Nxp1f4OvPUlA,1316
-large_image_source_bioformats-1.32.4.dev8.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
-large_image_source_bioformats-1.32.4.dev8.dist-info/entry_points.txt,sha256=xgIbKr53QhQkyRFkr87fkagfPWweeqhHHekUEMrcpF8,202
-large_image_source_bioformats-1.32.4.dev8.dist-info/top_level.txt,sha256=e0enjlcFXwPi638IhE71Rk5-eeriA7W3M3IsQ6yH3RI,30
-large_image_source_bioformats-1.32.4.dev8.dist-info/RECORD,,