large-image-source-bioformats 1.31.0a1__py3-none-any.whl → 1.31.1__py3-none-any.whl

large_image_source_bioformats/__init__.py

@@ -419,6 +419,10 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
             lastX, lastY = rdr.getSizeX(), rdr.getSizeY()
             for idx in range(1, self._metadata['seriesCount']):
                 rdr.setSeries(idx)
+                try:
+                    self._bioimage.read(series=idx, rescale=False, XYWH=(0, 0, 1, 1))
+                except Exception:
+                    continue
                 if (rdr.getSizeX() == self._metadata['sizeX'] and
                         rdr.getSizeY() == self._metadata['sizeY'] and
                         rdr.getImageCount() == self._metadata['imageCount']):
@@ -767,6 +771,10 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
                         'fake', 'no'}:
                     if ext not in cls.extensions:
                         cls.extensions[ext] = SourcePriority.IMPLICIT
+            # These were found by reading some OMERO test files
+            for ext in {'columbusidx', 'dv_vol', 'lifext'}:
+                if ext.lower() not in cls.extensions:
+                    cls.extensions[ext.lower()] = SourcePriority.IMPLICIT_LOW
 
 
 def open(*args, **kwargs):

{large_image_source_bioformats-1.31.0a1.dist-info → large_image_source_bioformats-1.31.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.2
 Name: large-image-source-bioformats
-Version: 1.31.0a1
+Version: 1.31.1
 Summary: An bioformats tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -19,10 +19,10 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
 License-File: LICENSE
-Requires-Dist: large-image>=1.31.0a1
+Requires-Dist: large-image>=1.31.1
 Requires-Dist: python-bioformats>=1.5.2
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.31.0a1; extra == "girder"
+Requires-Dist: girder-large-image>=1.31.1; extra == "girder"
 Dynamic: author
 Dynamic: author-email
 Dynamic: classifier

large_image_source_bioformats-1.31.1.dist-info/RECORD

@@ -0,0 +1,8 @@
+large_image_source_bioformats/__init__.py,sha256=5rirTtMMdq1wD917gcGrUpa_KXtzTi87RB_Gw1kpfYQ,34401
+large_image_source_bioformats/girder_source.py,sha256=t0X1P0m4qMsRklpdxoPH-yqgHByMvQIzFJ4qRIUykVI,1355
+large_image_source_bioformats-1.31.1.dist-info/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+large_image_source_bioformats-1.31.1.dist-info/METADATA,sha256=VZx_XNvLvfLeXXRsH3jYLZVKNxronD4AhG0mKobhH6A,1359
+large_image_source_bioformats-1.31.1.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
+large_image_source_bioformats-1.31.1.dist-info/entry_points.txt,sha256=xgIbKr53QhQkyRFkr87fkagfPWweeqhHHekUEMrcpF8,202
+large_image_source_bioformats-1.31.1.dist-info/top_level.txt,sha256=e0enjlcFXwPi638IhE71Rk5-eeriA7W3M3IsQ6yH3RI,30
+large_image_source_bioformats-1.31.1.dist-info/RECORD,,

large_image_source_bioformats-1.31.0a1.dist-info/RECORD

@@ -1,8 +0,0 @@
-large_image_source_bioformats/__init__.py,sha256=KGs5DY7YZrmaEhkvSYeQOdz3Wt-DDnHaIi4vfHAe07Q,33975
-large_image_source_bioformats/girder_source.py,sha256=t0X1P0m4qMsRklpdxoPH-yqgHByMvQIzFJ4qRIUykVI,1355
-large_image_source_bioformats-1.31.0a1.dist-info/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-large_image_source_bioformats-1.31.0a1.dist-info/METADATA,sha256=4u7G82QcqZANGr8lFxEKgENnAZ6gwAwaBw6l2yLnZ2g,1365
-large_image_source_bioformats-1.31.0a1.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
-large_image_source_bioformats-1.31.0a1.dist-info/entry_points.txt,sha256=xgIbKr53QhQkyRFkr87fkagfPWweeqhHHekUEMrcpF8,202
-large_image_source_bioformats-1.31.0a1.dist-info/top_level.txt,sha256=e0enjlcFXwPi638IhE71Rk5-eeriA7W3M3IsQ6yH3RI,30
-large_image_source_bioformats-1.31.0a1.dist-info/RECORD,,