large-image-source-bioformats 1.30.6__py3-none-any.whl → 1.30.6.dev2__py3-none-any.whl

large_image_source_bioformats/__init__.py

@@ -62,7 +62,7 @@ _openImages = []
 
 
 # Default to ignoring files with no extension and some specific extensions.
-config.ConfigValues['source_bioformats_ignored_names'] = r'(^[^.]*|\.(jpg|jpeg|jpe|png|tif|tiff|ndpi|nd2|ome|nc|json|geojson|fits|isyntax|mrxs|zip|zarr(\.db|\.zip)))$'  # noqa
+config.ConfigValues['source_bioformats_ignored_names'] = r'(^[^.]*|\.(jpg|jpeg|jpe|png|tif|tiff|ndpi|nd2|ome|nc|json|isyntax|mrxs|zip|zarr(\.db|\.zip)))$'  # noqa
 
 
 def _monitor_thread():
@@ -712,7 +712,7 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
         """
         info = self._metadata['seriesAssociatedImages'].get(imageKey)
         if info is None:
-            return None
+            return
         series = info['seriesNum']
         with self._tileLock:
             try:
@@ -741,19 +741,6 @@ class BioformatsFileTileSource(FileTileSource, metaclass=LruCacheMetaclass):
                 ext = dotext.strip('.')
                 if ext not in cls.extensions:
                     cls.extensions[ext] = SourcePriority.IMPLICIT
-            # The python modules doesn't list all the extensions that can be
-            # read, so supplement from the jar
-            readerlist = zipfile.ZipFile(
-                pathlib.Path(bioformats.__file__).parent /
-                'jars/bioformats_package.jar',
-            ).open('loci/formats/readers.txt').read(100000).decode().split('\n')
-            pattern = re.compile(r'^loci\.formats\.in\..* # (?:.*?\b(\w{2,})\b(?:,|\s|$))')
-            for line in readerlist:
-                for ext in set(pattern.findall(line)) - {
-                        'pattern', 'urlreader', 'screen', 'zip', 'zarr', 'db',
-                        'fake', 'no'}:
-                    if ext not in cls.extensions:
-                        cls.extensions[ext] = SourcePriority.IMPLICIT
 
 
 def open(*args, **kwargs):

{large_image_source_bioformats-1.30.6.dist-info → large_image_source_bioformats-1.30.6.dev2.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.2
+Metadata-Version: 2.1
 Name: large-image-source-bioformats
-Version: 1.30.6
+Version: 1.30.6.dev2
 Summary: An bioformats tilesource for large_image.
 Home-page: https://github.com/girder/large_image
 Author: Kitware, Inc.
@@ -19,22 +19,10 @@ Classifier: Programming Language :: Python :: 3.13
 Requires-Python: >=3.8
 Description-Content-Type: text/x-rst
 License-File: LICENSE
-Requires-Dist: large-image>=1.30.6
+Requires-Dist: large-image>=1.30.6.dev2
 Requires-Dist: python-bioformats>=1.5.2
 Provides-Extra: girder
-Requires-Dist: girder-large-image>=1.30.6; extra == "girder"
-Dynamic: author
-Dynamic: author-email
-Dynamic: classifier
-Dynamic: description
-Dynamic: description-content-type
-Dynamic: home-page
-Dynamic: keywords
-Dynamic: license
-Dynamic: provides-extra
-Dynamic: requires-dist
-Dynamic: requires-python
-Dynamic: summary
+Requires-Dist: girder-large-image>=1.30.6.dev2; extra == "girder"
 
 An bioformats tilesource for large_image.
 

large_image_source_bioformats-1.30.6.dev2.dist-info/RECORD

@@ -0,0 +1,8 @@
+large_image_source_bioformats/__init__.py,sha256=FrnLn4Tpjfnk-bxOvbr6hxUWqar9nRYe8pzgkBc_vSQ,32406
+large_image_source_bioformats/girder_source.py,sha256=t0X1P0m4qMsRklpdxoPH-yqgHByMvQIzFJ4qRIUykVI,1355
+large_image_source_bioformats-1.30.6.dev2.dist-info/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+large_image_source_bioformats-1.30.6.dev2.dist-info/METADATA,sha256=PGn5gW6Vnd1FCVWIwIYT6HxtC94Rs7wPhjjn1n3EkKA,1118
+large_image_source_bioformats-1.30.6.dev2.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
+large_image_source_bioformats-1.30.6.dev2.dist-info/entry_points.txt,sha256=xgIbKr53QhQkyRFkr87fkagfPWweeqhHHekUEMrcpF8,202
+large_image_source_bioformats-1.30.6.dev2.dist-info/top_level.txt,sha256=e0enjlcFXwPi638IhE71Rk5-eeriA7W3M3IsQ6yH3RI,30
+large_image_source_bioformats-1.30.6.dev2.dist-info/RECORD,,

{large_image_source_bioformats-1.30.6.dist-info → large_image_source_bioformats-1.30.6.dev2.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.8.0)
+Generator: setuptools (75.6.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

large_image_source_bioformats-1.30.6.dist-info/RECORD

@@ -1,8 +0,0 @@
-large_image_source_bioformats/__init__.py,sha256=lJawSrn3ScKHffmtl7Rut_tgmVKJru3xbbmMn47c1p0,33201
-large_image_source_bioformats/girder_source.py,sha256=t0X1P0m4qMsRklpdxoPH-yqgHByMvQIzFJ4qRIUykVI,1355
-large_image_source_bioformats-1.30.6.dist-info/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-large_image_source_bioformats-1.30.6.dist-info/METADATA,sha256=1EVgho5adl4ZZ-qdh5tPjz6CyHFQ6R8vdNGnKpE-0HQ,1359
-large_image_source_bioformats-1.30.6.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
-large_image_source_bioformats-1.30.6.dist-info/entry_points.txt,sha256=xgIbKr53QhQkyRFkr87fkagfPWweeqhHHekUEMrcpF8,202
-large_image_source_bioformats-1.30.6.dist-info/top_level.txt,sha256=e0enjlcFXwPi638IhE71Rk5-eeriA7W3M3IsQ6yH3RI,30
-large_image_source_bioformats-1.30.6.dist-info/RECORD,,