lamindb_setup 1.6.0__py3-none-any.whl → 1.6.1__py3-none-any.whl

lamindb_setup/__init__.py

@@ -33,7 +33,7 @@ Modules & settings:
 
 """
 
-__version__ = "1.6.0"  # denote a release candidate for 0.1.0 with 0.1rc1
+__version__ = "1.6.1"  # denote a release candidate for 0.1.0 with 0.1rc1
 
 import os
 

lamindb_setup/_connect_instance.py

@@ -2,7 +2,7 @@ from __future__ import annotations
 
 import importlib
 import os
-from typing import TYPE_CHECKING
+from typing import TYPE_CHECKING, Any
 from uuid import UUID
 
 from lamin_utils import logger
@@ -189,7 +189,7 @@ def _connect_instance(
 
 
 @unlock_cloud_sqlite_upon_exception(ignore_prev_locker=True)
-def connect(instance: str | None = None, **kwargs) -> str | tuple | None:
+def connect(instance: str | None = None, **kwargs: Any) -> str | tuple | None:
     """Connect to an instance.
 
     Args:

lamindb_setup/core/_hub_client.py

@@ -2,6 +2,7 @@ from __future__ import annotations
 
 import json
 import os
+from typing import Literal
 from urllib.request import urlretrieve
 
 from gotrue.errors import AuthUnknownError
@@ -25,7 +26,7 @@ def load_fallback_connector() -> Connector:
     return connector
 
 
-PROD_URL = "https://hub.lamin.ai"
+PROD_URL = "https://laesaummdydllppgfchu.supabase.co"
 PROD_ANON_KEY = "eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJzdXBhYmFzZSIsInJlZiI6ImxhZXNhdW1tZHlkbGxwcGdmY2h1Iiwicm9sZSI6ImFub24iLCJpYXQiOjE2NTY4NDA1NTEsImV4cCI6MTk3MjQxNjU1MX0.WUeCRiun0ExUxKIv5-CtjF6878H8u26t0JmCWx3_2-c"
 
 
@@ -197,10 +198,20 @@ def requests_client():
     return requests
 
 
-def request_get_auth(url: str, access_token: str, renew_token: bool = True):
+def request_with_auth(
+    url: str,
+    method: Literal["get", "post", "put", "delete", "head", "options"],
+    access_token: str,
+    renew_token: bool = True,
+    **kwargs,
+):
     requests = requests_client()
 
-    response = requests.get(url, headers={"Authorization": f"Bearer {access_token}"})
+    headers = kwargs.pop("headers", {})
+    headers["Authorization"] = f"Bearer {access_token}"
+
+    make_request = getattr(requests, method)
+    response = make_request(url, headers=headers, **kwargs)
     # upate access_token and try again if failed
     if response.status_code != 200 and renew_token:
         from lamindb_setup import settings
@@ -212,7 +223,7 @@ def request_get_auth(url: str, access_token: str, renew_token: bool = True):
         settings.user.access_token = access_token
         save_user_settings(settings.user)
 
-        response = requests.get(
-            url, headers={"Authorization": f"Bearer {access_token}"}
-        )
+        headers["Authorization"] = f"Bearer {access_token}"
+
+        response = make_request(url, headers=headers, **kwargs)
     return response

lamindb_setup/core/_hub_core.py

@@ -17,7 +17,7 @@ from ._hub_client import (
     call_with_fallback,
     call_with_fallback_auth,
     connect_hub,
-    request_get_auth,
+    request_with_auth,
 )
 from ._hub_crud import (
     _delete_instance_record,
@@ -495,7 +495,7 @@ def access_db(
             )
         url = instance_api_url + url
 
-    response = request_get_auth(url, access_token, renew_token)  # type: ignore
+    response = request_with_auth(url, "get", access_token, renew_token)  # type: ignore
     response_json = response.json()
     if response.status_code != 200:
         raise PermissionError(

lamindb_setup/core/_settings_storage.py

@@ -2,9 +2,7 @@ from __future__ import annotations
 
 import os
 import secrets
-import shutil
 import string
-from pathlib import Path
 from typing import TYPE_CHECKING, Any, Literal
 
 import fsspec
@@ -208,7 +206,7 @@ class StorageSettings:
     ):
         self._uid = uid
         self._uuid_ = uuid
-        self._root_init = UPath(root)
+        self._root_init = UPath(root).expanduser()
         if isinstance(self._root_init, LocalPathClasses):  # local paths
             try:
                 (self._root_init / ".lamindb").mkdir(parents=True, exist_ok=True)

lamindb_setup/core/cloud_sqlite_locker.py

@@ -9,12 +9,17 @@ from lamin_utils import logger
 from .upath import UPath, create_mapper, infer_filesystem
 
 if TYPE_CHECKING:
+    from collections.abc import Callable
     from pathlib import Path
+    from typing import ParamSpec, TypeVar
     from uuid import UUID
 
     from ._settings_instance import InstanceSettings
     from ._settings_user import UserSettings
 
+    P = ParamSpec("P")
+    R = TypeVar("R")
+
 EXPIRATION_TIME = 24 * 60 * 60 * 7  # 7 days
 
 MAX_MSG_COUNTER = 100  # print the msg after this number of iterations
@@ -207,7 +212,9 @@ def clear_locker():
 
 
 # decorator
-def unlock_cloud_sqlite_upon_exception(ignore_prev_locker: bool = False):
+def unlock_cloud_sqlite_upon_exception(
+    ignore_prev_locker: bool = False,
+) -> Callable[[Callable[P, R]], Callable[P, R]]:
     """Decorator to unlock a cloud sqlite instance upon an exception.
 
     Ignores `InstanceLockedException`.

lamindb_setup/core/upath.py

@@ -821,7 +821,7 @@ register_implementation("s3", S3QueryPath, clobber=True)
 
 
 def create_path(path: UPathStr, access_token: str | None = None) -> UPath:
-    upath = UPath(path)
+    upath = UPath(path).expanduser()
 
     if upath.protocol == "s3":
         # add managed credentials and other options for AWS s3 paths

{lamindb_setup-1.6.0.dist-info → lamindb_setup-1.6.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: lamindb_setup
-Version: 1.6.0
+Version: 1.6.1
 Summary: Setup & configure LaminDB.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.10

{lamindb_setup-1.6.0.dist-info → lamindb_setup-1.6.1.dist-info}/RECORD

@@ -1,8 +1,8 @@
-lamindb_setup/__init__.py,sha256=vSYZ5n67C1AL8iuvzPXKwh2fwCyIbPYmLoKuByHGsA8,2754
+lamindb_setup/__init__.py,sha256=m38LZFyp_VF7qZdwLHYO-6TxKvZo3vTYw9mvjFFdsv4,2754
 lamindb_setup/_cache.py,sha256=ixasm_9pUFy-ztbhbqJRVP88uTbFclL60MwUUvZhMFs,1509
 lamindb_setup/_check.py,sha256=28PcG8Kp6OpjSLSi1r2boL2Ryeh6xkaCL87HFbjs6GA,129
 lamindb_setup/_check_setup.py,sha256=uveV6CGiwm9M5OMe3lxfAMDs5SU7j1EogJsQB03ZaRw,5928
-lamindb_setup/_connect_instance.py,sha256=Xx2d7GWBZ4qWhmk69ZAQNfehBlnAYejk9ojPL639VRA,18260
+lamindb_setup/_connect_instance.py,sha256=JhC5A8mlJjV_XFmLFfwMf4LN9_wr5StOEOexAMitK3k,18270
 lamindb_setup/_delete.py,sha256=2KnZOqd5Kgr45XzjiDE9der35LODDUajZD6_hcurGtQ,5676
 lamindb_setup/_disconnect.py,sha256=p6tRLhixU4CuSxMKqzGTr-ovKmTRlZ8aID5dWQxOsg8,1092
 lamindb_setup/_django.py,sha256=uIQflpkp8l3axyPaKURlk3kacgpElVP5KOKmFxYSMGk,1454
@@ -17,13 +17,14 @@ lamindb_setup/_schema_metadata.py,sha256=x4u15X_X-4dsS0Zot3mOwn_IWO0e7LL0Ip8vyUO
 lamindb_setup/_set_managed_storage.py,sha256=qC3ACD_PWG-MrzcS3fQpjDEOuxAaJBgPqCU_bDvqtXo,2043
 lamindb_setup/_setup_user.py,sha256=8BSGsW5jfmB4FlkhMt5osYXBbVCdOQeAVATb-oAYxa0,4495
 lamindb_setup/_silence_loggers.py,sha256=AKF_YcHvX32eGXdsYK8MJlxEaZ-Uo2f6QDRzjKFCtws,1568
+lamindb_setup/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 lamindb_setup/core/__init__.py,sha256=BxIVMX5HQq8oZ1OuY_saUEJz5Tdd7gaCPngxVu5iou4,417
 lamindb_setup/core/_aws_options.py,sha256=BLLAtasJp7T0quMG7KgH8PmfHAn62izBwA7bYFwLV88,7748
 lamindb_setup/core/_aws_storage.py,sha256=nEjeUv4xUVpoV0Lx-zjjmyb9w804bDyaeiM-OqbfwM0,1799
 lamindb_setup/core/_deprecated.py,sha256=HN7iUBdEgahw5e4NHCd1VJooUfieNb6GRzS5x8jU-q8,2549
 lamindb_setup/core/_docs.py,sha256=3k-YY-oVaJd_9UIY-LfBg_u8raKOCNfkZQPA73KsUhs,276
-lamindb_setup/core/_hub_client.py,sha256=XJ9V0th11zcx87tDTDVtYf5YjnEC06_jiSRHcnbFseg,7510
-lamindb_setup/core/_hub_core.py,sha256=_TYVAbYzjmY1pd7egsqhIEFd31ZAycxlY0RFuYk56PQ,22551
+lamindb_setup/core/_hub_client.py,sha256=TD92DxeDC1mJvPuA8Y03DVKcAiLGr8uaddPiQ66KXm0,7788
+lamindb_setup/core/_hub_core.py,sha256=iLzPWbTwlUxmaCMOnU2jFtRqSYvP05DDI5IM5hUZVN0,22560
 lamindb_setup/core/_hub_crud.py,sha256=IAuPZes1am8OFwtcf5jSRQPGG1eKwVTEsp9Li-uq0cQ,5377
 lamindb_setup/core/_hub_utils.py,sha256=6dyDGyzYFgVfR_lE3VN3CP1jGp98gxPtr-T91PAP05U,2687
 lamindb_setup/core/_private_django_api.py,sha256=By63l3vIEtK1pq246FhHq3tslxsaTJGKm5VakYluWp4,2656
@@ -31,17 +32,17 @@ lamindb_setup/core/_settings.py,sha256=rpakpthAcvjOeAmldvZquml-7NJ8i44Hu_P8pJV_c
 lamindb_setup/core/_settings_instance.py,sha256=ftHAFFbg_0iThuywuQM37RIiCQnMEOc1dftTig1_DZo,19382
 lamindb_setup/core/_settings_load.py,sha256=adVwwEiwglrNNpZFgoP-EENZkzxZvKOzUr3z204pe94,4658
 lamindb_setup/core/_settings_save.py,sha256=P04ZnWFSN4Qq_QFWXNvJDs4yxrY9CjQBol_BDku_JEw,3227
-lamindb_setup/core/_settings_storage.py,sha256=op31t12T_fCfTG8OSfnXnIxB9VCQPg8Oo2cnZHVap8Y,14203
+lamindb_setup/core/_settings_storage.py,sha256=mo7KyhRUbGx38m3ahFfsEKMhLUvXcHun7TE7Al2D0QE,14177
 lamindb_setup/core/_settings_store.py,sha256=Qe5tsTtQO9TJ5jqr-VgiDs6MOkFrxO6y0kYEVveCN-I,2450
 lamindb_setup/core/_settings_user.py,sha256=5hmnMu6fxrHAcwBEtIL0P9N8V4B0SjhzIdqFQ9o3Tsg,1476
 lamindb_setup/core/_setup_bionty_sources.py,sha256=ox3X-SHiHa2lNPSWjwZhINypbLacX6kGwH6hVVrSFZc,1505
-lamindb_setup/core/cloud_sqlite_locker.py,sha256=i6TrT7HG0lqliPvZTlsZ_uplPaqhPBbabyfeR32SkA8,7107
+lamindb_setup/core/cloud_sqlite_locker.py,sha256=UBpmWcFLPhxwSWIF98n461NUJSYAHVXhsYmk8LpUTQU,7288
 lamindb_setup/core/django.py,sha256=6nKn_sokPqXqWE9EdRvhNzS5tjsMo3IZSfHiwTN_HcI,9348
 lamindb_setup/core/exceptions.py,sha256=4NpLUNUIfXYVTFX2FvLZF8RW34exk2Vn2X3G4YhnTRg,276
 lamindb_setup/core/hashing.py,sha256=M3Q1-ywnqh4Uy5zojbQfLju19HU0ySp8Oi7FGIJXfFI,3667
 lamindb_setup/core/types.py,sha256=zJii2le38BJUmsNVvzDrbzGYr0yaeb-9Rw9IKmsBr3k,523
-lamindb_setup/core/upath.py,sha256=U5CBiHVoEBEUi-YzYd0G8wMONkO-wcXQQ9htfDWbw-s,33876
-lamindb_setup-1.6.0.dist-info/LICENSE,sha256=UOZ1F5fFDe3XXvG4oNnkL1-Ecun7zpHzRxjp-XsMeAo,11324
-lamindb_setup-1.6.0.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
-lamindb_setup-1.6.0.dist-info/METADATA,sha256=Zf2AdqY6BlftKrFrwOY5HaWY9WSXv4GjaRuFs5D_mBQ,1792
-lamindb_setup-1.6.0.dist-info/RECORD,,
+lamindb_setup/core/upath.py,sha256=5ECvPWBfgxqRuvr0oOpsmUHyXrMVmt5TTSqevh9CIwU,33889
+lamindb_setup-1.6.1.dist-info/LICENSE,sha256=UOZ1F5fFDe3XXvG4oNnkL1-Ecun7zpHzRxjp-XsMeAo,11324
+lamindb_setup-1.6.1.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
+lamindb_setup-1.6.1.dist-info/METADATA,sha256=O6yvdWQMBiPbQNx3Ly31rC_emPl29gDKwY8XasMeYWs,1792
+lamindb_setup-1.6.1.dist-info/RECORD,,