lamindb_setup 0.81.3__py3-none-any.whl → 0.81.5__py3-none-any.whl

lamindb_setup/__init__.py

@@ -33,7 +33,7 @@ Modules & settings:
 
 """
 
-__version__ = "0.81.3"  # denote a release candidate for 0.1.0 with 0.1rc1
+__version__ = "0.81.5"  # denote a release candidate for 0.1.0 with 0.1rc1
 
 import os as _os
 import sys as _sys

lamindb_setup/_check_setup.py

@@ -52,6 +52,49 @@ def _get_current_instance_settings() -> InstanceSettings | None:
         return None
 
 
+def check_connecting_to_v1_instance(isettings: InstanceSettings):
+    from urllib.parse import urlparse
+
+    # we need to do this because the sqlite file should be already synced
+    # has no effect if not cloud sqlite
+    # errors if the sqlite file is not in the cloud and doesn't exist locally
+    # isettings.db syncs but doesn't error in this case due to error_no_origin=False
+    isettings._update_local_sqlite_file()
+
+    parsed_uri = urlparse(isettings.db)
+    db_type = parsed_uri.scheme
+
+    if db_type == "sqlite":
+        import sqlite3
+
+        conn = sqlite3.connect(parsed_uri.path)
+    elif db_type in ["postgresql", "postgres"]:
+        import psycopg2
+
+        conn = psycopg2.connect(isettings.db)
+    else:
+        raise ValueError("Unsupported database type. Use 'sqlite' or 'postgresql' URI.")
+
+    cur = conn.cursor()
+
+    if db_type == "sqlite":
+        cur.execute(
+            "SELECT name FROM sqlite_master WHERE type='table' AND name='lamindb_user'"
+        )
+        isv1 = cur.fetchone() is not None
+
+    else:  # postgres
+        cur.execute(
+            "SELECT EXISTS (SELECT FROM information_schema.tables WHERE table_name = 'lamindb_user')"
+        )
+        isv1 = cur.fetchone()[0]
+
+    if isv1:
+        raise SystemExit(
+            "This instance runs lamindb v1. Please run: pip install 'lamindb[bionty,wetlab,clinicore,ourprojects]'>1.0.0"
+        )
+
+
 # we make this a private function because in all the places it's used,
 # users should not see it
 def _check_instance_setup(
@@ -77,6 +120,7 @@ def _check_instance_setup(
     if isettings is not None:
         if reload_module and settings.auto_connect:
             if not django.IS_SETUP:
+                check_connecting_to_v1_instance(isettings)
                 django.setup_django(isettings)
                 if from_module is not None:
                     # this only reloads `from_module`

lamindb_setup/_migrate.py

@@ -28,14 +28,11 @@ def check_whether_migrations_in_sync(db_version_str: str):
         or installed_version.minor < db_version.minor
     ):
         db_version_lower = f"{db_version.major}.{db_version.minor}"
-        db_version_upper = f"{db_version.major}.{db_version.minor + 1}"
-        logger.warning(
-            f"the database ({db_version_str}) is ahead of your installed lamindb"
-            f" package ({installed_version_str})"
-        )
-        logger.important(
-            "please update lamindb: pip install"
-            f' "lamindb>={db_version_lower},<{db_version_upper}"'
+        raise SystemExit(
+            f"The database ({db_version_str}) is ahead of your installed lamindb"
+            f" package ({installed_version_str})\n"
+            "Please update lamindb: pip install"
+            f" 'lamindb[bionty,wetlab,clinicore,ourprojects]'>={db_version_lower}"
         )
     elif (
         installed_version.major > db_version.major

{lamindb_setup-0.81.3.dist-info → lamindb_setup-0.81.5.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.3
 Name: lamindb_setup
-Version: 0.81.3
+Version: 0.81.5
 Summary: Setup & configure LaminDB.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.9

{lamindb_setup-0.81.3.dist-info → lamindb_setup-0.81.5.dist-info}/RECORD

@@ -1,7 +1,7 @@
-lamindb_setup/__init__.py,sha256=xPpghv8_6NLAzTOyEbqSg4UsrBIVXl-wFpemsz9p40o,1714
+lamindb_setup/__init__.py,sha256=E0_mpQpJ8zIsVpG7ImGaeoYgsG_BaMJkkYKa7O7KCRw,1714
 lamindb_setup/_cache.py,sha256=1XnM-V_KprbjpgPY7Bg3FYn53Iz_2_fEgcMOaSdKKbg,1332
 lamindb_setup/_check.py,sha256=28PcG8Kp6OpjSLSi1r2boL2Ryeh6xkaCL87HFbjs6GA,129
-lamindb_setup/_check_setup.py,sha256=6cSfpmVOSgU7YiVHfJpBTGTQ7rrnwunt1pJT_jkgNM8,3196
+lamindb_setup/_check_setup.py,sha256=XO2nBRsCu24n0f3ugjw29nd8-_nfy6ubfJfjabV6Ees,4649
 lamindb_setup/_close.py,sha256=cXNwK7QTTyNFt2XTpLnO3KHljJ7ShOcISk95np_dltE,1239
 lamindb_setup/_connect_instance.py,sha256=ClSM1zQAqVmNBapmB7H3dzmnWdn1dkpr_y5HAsF74XU,16070
 lamindb_setup/_delete.py,sha256=yjLIegM2Lh6sWRSTTybI17wK_kA4_pF_k3iVUkkgEAE,5681
@@ -10,7 +10,7 @@ lamindb_setup/_entry_points.py,sha256=Hs2oJQOCTaGUdWn-1mufM6qUZr9W_EJ_Oc3f0_Vc0Y
 lamindb_setup/_exportdb.py,sha256=43g77-tH-vAlTn8ig1mMD9-KXLKvxUeDLaq0gVu3l-c,2114
 lamindb_setup/_importdb.py,sha256=yYYShzUajTsR-cTW4CZ-UNDWZY2uE5PAgNbp-wn8Ogc,1874
 lamindb_setup/_init_instance.py,sha256=zJbkP22h4Yif_VNooL06FFoHqH1EU45CqiLwF8FUaKs,14368
-lamindb_setup/_migrate.py,sha256=x_b4k4XRfLSD-EEFMc324yK6DIK7goW33wUytbIWlNs,8917
+lamindb_setup/_migrate.py,sha256=3R7j8DjZpZ4R4rloFulsqtkuNddIyRAj7Gvii9BvKz0,8830
 lamindb_setup/_register_instance.py,sha256=alQuYp2f8Ct8xvRC1gt8p_HZ0tqCd3gZD3kiPBLPpsI,1269
 lamindb_setup/_schema.py,sha256=b3uzhhWpV5mQtDwhMINc2MabGCnGLESy51ito3yl6Wc,679
 lamindb_setup/_schema_metadata.py,sha256=49wDLbhRhatDeADjHOPfQURt65lf_OZ7lob1ZiAT_ac,13773
@@ -41,7 +41,7 @@ lamindb_setup/core/exceptions.py,sha256=4NpLUNUIfXYVTFX2FvLZF8RW34exk2Vn2X3G4Yhn
 lamindb_setup/core/hashing.py,sha256=26dtak7XgmrWa_D1zuDyxObRQcriMtnc1yEigkKASmM,3142
 lamindb_setup/core/types.py,sha256=zJii2le38BJUmsNVvzDrbzGYr0yaeb-9Rw9IKmsBr3k,523
 lamindb_setup/core/upath.py,sha256=a0yxP9dmujTn_hkDC0E2UuVsX-Img4i0kVNB-OV5K1s,29038
-lamindb_setup-0.81.3.dist-info/LICENSE,sha256=UOZ1F5fFDe3XXvG4oNnkL1-Ecun7zpHzRxjp-XsMeAo,11324
-lamindb_setup-0.81.3.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
-lamindb_setup-0.81.3.dist-info/METADATA,sha256=VPKC024x5sheF1oT-iZRMb4k77WARFy2Y2PwA4Z_S9E,1730
-lamindb_setup-0.81.3.dist-info/RECORD,,
+lamindb_setup-0.81.5.dist-info/LICENSE,sha256=UOZ1F5fFDe3XXvG4oNnkL1-Ecun7zpHzRxjp-XsMeAo,11324
+lamindb_setup-0.81.5.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
+lamindb_setup-0.81.5.dist-info/METADATA,sha256=8SQmhve8oc2imD0ZYKvK-5q6ZN70Hr5Op-n6NIb2uq4,1730
+lamindb_setup-0.81.5.dist-info/RECORD,,

{lamindb_setup-0.81.3.dist-info → lamindb_setup-0.81.5.dist-info}/WHEEL

@@ -1,4 +1,4 @@
 Wheel-Version: 1.0
-Generator: flit 3.9.0
+Generator: flit 3.10.1
 Root-Is-Purelib: true
 Tag: py3-none-any