lamindb_setup 0.76.6__py2.py3-none-any.whl → 0.76.8__py2.py3-none-any.whl

lamindb_setup/__init__.py

@@ -34,7 +34,7 @@ Modules & settings:
 
 """
 
-__version__ = "0.76.6"  # denote a release candidate for 0.1.0 with 0.1rc1
+__version__ = "0.76.8"  # denote a release candidate for 0.1.0 with 0.1rc1
 
 import sys
 from os import name as _os_name

lamindb_setup/_migrate.py

@@ -31,7 +31,10 @@ def check_whether_migrations_in_sync(db_version_str: str):
         db_version_upper = f"{db_version.major}.{db_version.minor + 1}"
         logger.warning(
             f"your database ({db_version_str}) is ahead of your installed lamindb"
-            f" package ({installed_version_str}) \n❗ please update lamindb: pip install"
+            f" package ({installed_version_str})"
+        )
+        logger.important(
+            "please update lamindb: pip install"
             f' "lamindb>={db_version_lower},<{db_version_upper}"'
         )
     elif (
@@ -40,9 +43,9 @@ def check_whether_migrations_in_sync(db_version_str: str):
     ):
         logger.warning(
             f"your database ({db_version_str}) is behind your installed lamindb package"
-            f" ({installed_version_str}) \n❗ please migrate your database: lamin"
-            " migrate deploy"
+            f" ({installed_version_str})"
         )
+        logger.important("please migrate your database: lamin migrate deploy")
 
 
 # for tests, see lamin-cli

lamindb_setup/_schema_metadata.py

@@ -95,22 +95,42 @@ def _dict_to_uuid(dict: dict):
 RelationType = Literal["many-to-one", "one-to-many", "many-to-many", "one-to-one"]
 Type = Literal[
     "ForeignKey",
-    "CharField",
-    "DateTimeField",
+    # the following are generated with `from django.db import models; [attr for attr in dir(models) if attr.endswith('Field')]`
     "AutoField",
-    "BooleanField",
-    "BigIntegerField",
-    "SmallIntegerField",
-    "TextField",
     "BigAutoField",
-    "ManyToManyField",
-    "IntegerField",
-    "OneToOneField",
-    "JSONField",
+    "BigIntegerField",
+    "BinaryField",
+    "BooleanField",
+    "CharField",
+    "CommaSeparatedIntegerField",
     "DateField",
+    "DateTimeField",
+    "DecimalField",
+    "DurationField",
+    "EmailField",
+    "Field",
+    "FileField",
+    "FilePathField",
     "FloatField",
-    "PositiveIntegerField",
+    "GeneratedField",
+    "GenericIPAddressField",
+    "IPAddressField",
+    "ImageField",
+    "IntegerField",
+    "JSONField",
+    "ManyToManyField",
+    "NullBooleanField",
+    "OneToOneField",
     "PositiveBigIntegerField",
+    "PositiveIntegerField",
+    "PositiveSmallIntegerField",
+    "SlugField",
+    "SmallAutoField",
+    "SmallIntegerField",
+    "TextField",
+    "TimeField",
+    "URLField",
+    "UUIDField",
 ]
 
 

lamindb_setup/core/_hub_client.py

@@ -98,7 +98,7 @@ def get_access_token(email: str | None = None, password: str | None = None):
         )
         return auth_response.session.access_token
     finally:
-        hub.auth.sign_out()
+        hub.auth.sign_out(options={"scope": "local"})
 
 
 def call_with_fallback_auth(
@@ -113,7 +113,7 @@ def call_with_fallback_auth(
             result = callable(**kwargs, client=client)
         finally:
             try:
-                client.auth.sign_out()
+                client.auth.sign_out(options={"scope": "local"})
             except NameError:
                 pass
         return result
@@ -137,7 +137,7 @@ def call_with_fallback_auth(
                 raise e
         finally:
             try:
-                client.auth.sign_out()
+                client.auth.sign_out(options={"scope": "local"})
             except NameError:
                 pass
     return result
@@ -156,6 +156,9 @@ def call_with_fallback(
             if fallback_env:
                 raise e
         finally:
-            # in case there was sign in
-            client.auth.sign_out()
+            try:
+                # in case there was sign in
+                client.auth.sign_out(options={"scope": "local"})
+            except NameError:
+                pass
     return result

lamindb_setup/core/_settings_instance.py

@@ -161,8 +161,9 @@ class InstanceSettings:
         elif not mute_warning:
             logger.warning(
                 f"none of the registered local storage locations were found in your environment: {local_records}"
-                "\n❗ please register a new local storage location via `ln.settings.storage_local = local_root_path` "
-                "and re-load/connect the instance"
+            )
+            logger.important(
+                "please register a new local storage location via `ln.settings.storage_local = local_root_path` and re-load/connect the instance"
             )
         return None
 

lamindb_setup/core/_setup_bionty_sources.py

@@ -75,7 +75,9 @@ def load_bionty_sources(isettings: InstanceSettings):
 
     try:
         # need try except because of integer primary key migration
-        active_records = Source.objects.filter(currently_used=True).all().values()
+        active_records = (
+            Source.objects.filter(currently_used=True).order_by("id").all().values()
+        )
         for kwargs in active_records:
             for db_field, base_col in RENAME.items():
                 kwargs[base_col] = kwargs.pop(db_field)

{lamindb_setup-0.76.6.dist-info → lamindb_setup-0.76.8.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lamindb_setup
-Version: 0.76.6
+Version: 0.76.8
 Summary: Setup & configure LaminDB.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Description-Content-Type: text/markdown
@@ -13,11 +13,12 @@ Requires-Dist: appdirs<2.0.0
 Requires-Dist: requests
 Requires-Dist: universal_pathlib==0.2.2
 Requires-Dist: botocore<2.0.0
+Requires-Dist: gotrue>=2.1.0
 Requires-Dist: supabase==2.2.1
 Requires-Dist: psutil
 Requires-Dist: urllib3<2 ; extra == "aws"
 Requires-Dist: aiobotocore[boto3]>=2.5.4,<3.0.0 ; extra == "aws"
-Requires-Dist: s3fs>=2023.12.2,<=2024.3.1 ; extra == "aws"
+Requires-Dist: s3fs>=2023.12.2,<=2024.6.1 ; extra == "aws"
 Requires-Dist: pyjwt<3.0.0 ; extra == "dev"
 Requires-Dist: psycopg2-binary ; extra == "dev"
 Requires-Dist: python-dotenv ; extra == "dev"
@@ -28,7 +29,7 @@ Requires-Dist: pytest-xdist ; extra == "dev"
 Requires-Dist: nbproject-test>=0.4.3 ; extra == "dev"
 Requires-Dist: pandas ; extra == "dev"
 Requires-Dist: django-schema-graph ; extra == "erdiagram"
-Requires-Dist: gcsfs>=2023.12.2,<=2024.3.1 ; extra == "gcp"
+Requires-Dist: gcsfs>=2023.12.2,<=2024.6.1 ; extra == "gcp"
 Project-URL: Home, https://github.com/laminlabs/lamindb-setup
 Provides-Extra: aws
 Provides-Extra: dev

{lamindb_setup-0.76.6.dist-info → lamindb_setup-0.76.8.dist-info}/RECORD

@@ -1,4 +1,4 @@
-lamindb_setup/__init__.py,sha256=oS0T4Bi_gmUMhmQgSv_QLNn_UX7KoGP3pVyA6cv1XBI,1542
+lamindb_setup/__init__.py,sha256=kQrdnR18O5ztr_aI5pTm9X9hB1RD6aJXYT29cB7kiIM,1542
 lamindb_setup/_cache.py,sha256=wA7mbysANwe8hPNbjDo9bOmXJ0xIyaS5iyxIpxSWji4,846
 lamindb_setup/_check.py,sha256=28PcG8Kp6OpjSLSi1r2boL2Ryeh6xkaCL87HFbjs6GA,129
 lamindb_setup/_check_setup.py,sha256=cNEL9Q4yPpmEkGKHH8JgullWl1VUZwALJ4RHn9wZypY,2613
@@ -9,10 +9,10 @@ lamindb_setup/_django.py,sha256=EoyWvFzH0i9wxjy4JZhcoXCTckztP_Mrl6FbYQnMmLE,1534
 lamindb_setup/_exportdb.py,sha256=43g77-tH-vAlTn8ig1mMD9-KXLKvxUeDLaq0gVu3l-c,2114
 lamindb_setup/_importdb.py,sha256=yYYShzUajTsR-cTW4CZ-UNDWZY2uE5PAgNbp-wn8Ogc,1874
 lamindb_setup/_init_instance.py,sha256=VxHgD2i0hrFm2f_WCX76YmS_Lsx2iufrMtfab82r8X0,12391
-lamindb_setup/_migrate.py,sha256=P4n3x0SYzO9szjF2-JMa7z4mQadtWjHv5ow4HbCDZLI,8864
+lamindb_setup/_migrate.py,sha256=tbpZVDwWivd2BZomx_D-3XyvMFMSehgoIs4LpqS2w9A,8915
 lamindb_setup/_register_instance.py,sha256=alQuYp2f8Ct8xvRC1gt8p_HZ0tqCd3gZD3kiPBLPpsI,1269
 lamindb_setup/_schema.py,sha256=b3uzhhWpV5mQtDwhMINc2MabGCnGLESy51ito3yl6Wc,679
-lamindb_setup/_schema_metadata.py,sha256=nF29OuMNswJUCyvSyOHEUQLQ7PcfB7uwvczloBYSWuU,13187
+lamindb_setup/_schema_metadata.py,sha256=XfKCcpQXoatx4Dm2pflp-mPhZ9tpqjn2Cq4ip3MOFSY,13715
 lamindb_setup/_set_managed_storage.py,sha256=4tDxXQMt8Gw028uY3vIQxZQ7qBNXhQMc8saarNK_Z-s,2043
 lamindb_setup/_setup_user.py,sha256=6Oc7Rke-yRQSZbuntdUAz8QbJ6UuPzYHI9FnYlf_q-A,3670
 lamindb_setup/_silence_loggers.py,sha256=AKF_YcHvX32eGXdsYK8MJlxEaZ-Uo2f6QDRzjKFCtws,1568
@@ -21,26 +21,26 @@ lamindb_setup/core/_aws_credentials.py,sha256=uKMQO9q42Hnepz8aj3RxwLKDWUJx8pNOYr
 lamindb_setup/core/_aws_storage.py,sha256=nEjeUv4xUVpoV0Lx-zjjmyb9w804bDyaeiM-OqbfwM0,1799
 lamindb_setup/core/_deprecated.py,sha256=3qxUI1dnDlSeR0BYrv7ucjqRBEojbqotPgpShXs4KF8,2520
 lamindb_setup/core/_docs.py,sha256=3k-YY-oVaJd_9UIY-LfBg_u8raKOCNfkZQPA73KsUhs,276
-lamindb_setup/core/_hub_client.py,sha256=Gpt3TmxWQMVenKugCu1agUb-xGN9YFsQOKmrHuFiiDs,5605
+lamindb_setup/core/_hub_client.py,sha256=4FcZBIuKhIWT0hggi3fm3bObOz7j7uhMU6bC0-98kgE,5785
 lamindb_setup/core/_hub_core.py,sha256=2Ni7vIkUcZw9ryBLgjercvLsdAL8-3xZNmrxyzNCU98,17049
 lamindb_setup/core/_hub_crud.py,sha256=eZErpq9t1Cp2ULBSi457ekrcqfesw4Y6IJgaqyrINMY,5276
 lamindb_setup/core/_hub_utils.py,sha256=w5IRtrxZcvxmGSJslzuZF89ewkzXV4cCUmZUVrqmAfo,3026
 lamindb_setup/core/_private_django_api.py,sha256=KIn43HOhiRjkbTbddyJqv-WNTTa1bAizbM1tWXoXPBg,2869
 lamindb_setup/core/_settings.py,sha256=46axQ5HPvI0X9YuotgdpuSOfSo7qYU1DudIx3vxpFk0,4471
-lamindb_setup/core/_settings_instance.py,sha256=azgqSWEnTfZM9ghgdF6atvIxoUP6fx49Y9tZTqMQTuc,17589
+lamindb_setup/core/_settings_instance.py,sha256=QkhBeDrnM86WDq_FL6KwBIkQxW9mqLjwNW7FSBoKXxs,17608
 lamindb_setup/core/_settings_load.py,sha256=bRkGgaEnLZmnOlU5ptDoSM-YXzC2l0Cb7RBoBY6VH9k,3717
 lamindb_setup/core/_settings_save.py,sha256=n_tYfb9EBSxwm4LHyPRHJptE5uB8lmHhcRkz1JkAmhg,2781
 lamindb_setup/core/_settings_storage.py,sha256=jFdoIkSn1gPDDZKjAlgKyrlsHBqZDOvv-UnuUI7aD_4,14249
 lamindb_setup/core/_settings_store.py,sha256=VEE8Ff2A7y4j8ksOaa7g48jNaOqe1PBnBjb1PKKGUKU,2115
 lamindb_setup/core/_settings_user.py,sha256=P2lC4WDRAFfT-Xq3MlXJ-wMKIHCoGNhMTQfRGIAyUNQ,1344
-lamindb_setup/core/_setup_bionty_sources.py,sha256=ANBIiWHoYxLBQqsiKs-rCq3k-p6D34T4NM28gkY6YLA,3389
+lamindb_setup/core/_setup_bionty_sources.py,sha256=o2L5Ww8TKgSqJtL4cGUcpJwLNYxA9BZgddhCMCu_E2g,3428
 lamindb_setup/core/cloud_sqlite_locker.py,sha256=reu02M4aE2BT_A5AFqwhv48l91mOMyQ4zTd-hh-wtuU,6922
 lamindb_setup/core/django.py,sha256=QUQm3zt5QIiD8uv6o9vbSm_bshqiSWzKSkgD3z2eJCg,3542
 lamindb_setup/core/exceptions.py,sha256=eoI7AXgATgDVzgArtN7CUvpaMUC067vsBg5LHCsWzDM,305
 lamindb_setup/core/hashing.py,sha256=Y2cvEaqtm3KwpHqj5ZG2f_sLaXhsQT4oDrmJdHbOQeo,3116
 lamindb_setup/core/types.py,sha256=bcYnZ0uM_2NXKJCl94Mmc-uYrQlRUUVKG3sK2N-F-N4,532
 lamindb_setup/core/upath.py,sha256=EPLLm62q-Y3hZzd-286cynFMttXKDNXNOKL3_QGkeug,27215
-lamindb_setup-0.76.6.dist-info/LICENSE,sha256=UOZ1F5fFDe3XXvG4oNnkL1-Ecun7zpHzRxjp-XsMeAo,11324
-lamindb_setup-0.76.6.dist-info/WHEEL,sha256=Sgu64hAMa6g5FdzHxXv9Xdse9yxpGGMeagVtPMWpJQY,99
-lamindb_setup-0.76.6.dist-info/METADATA,sha256=aipPhnfIkB8MWkSmDkqbCSb-iOcQNbbs0lcQzqa5_w8,1638
-lamindb_setup-0.76.6.dist-info/RECORD,,
+lamindb_setup-0.76.8.dist-info/LICENSE,sha256=UOZ1F5fFDe3XXvG4oNnkL1-Ecun7zpHzRxjp-XsMeAo,11324
+lamindb_setup-0.76.8.dist-info/WHEEL,sha256=Sgu64hAMa6g5FdzHxXv9Xdse9yxpGGMeagVtPMWpJQY,99
+lamindb_setup-0.76.8.dist-info/METADATA,sha256=oqDAk3PGTipph7_JezoeXlST0hucIKVreA9VRWUzcBA,1667
+lamindb_setup-0.76.8.dist-info/RECORD,,