lamindb 1.9.0__py3-none-any.whl → 1.9.1__py3-none-any.whl

lamindb/__init__.py

@@ -108,7 +108,7 @@ Backwards compatibility.
 
 # ruff: noqa: I001
 # denote a release candidate for 0.1.0 with 0.1rc1, 0.1a1, 0.1b1, etc.
-__version__ = "1.9.0"
+__version__ = "1.9.1"
 
 import warnings
 

lamindb/curators/core.py

@@ -1236,6 +1236,9 @@ class CatVector:
         registry = self._field.field.model
         field_name = self._field.field.name
         non_validated_records: SQLRecordList[Any] = []  # type: ignore
+        type_record = None
+        if self._subtype_str != "" and "=" not in self._subtype_str:
+            type_record = registry.get(name=self._subtype_str)
         if df is not None and registry == Feature:
             nonval_columns = Feature.inspect(df.columns, mute=True).non_validated
             non_validated_records = Feature.from_df(df.loc[:, nonval_columns])
@@ -1252,6 +1255,9 @@ class CatVector:
                 init_kwargs = {field_name: value}
                 if registry == Feature:
                     init_kwargs["dtype"] = "cat" if dtype is None else dtype
+                if type_record is not None:
+                    # if subtype_str is set, we need to set the type for new records
+                    init_kwargs["type"] = type_record
                 non_validated_records.append(registry(**init_kwargs, **create_kwargs))
         if len(non_validated_records) > 0:
             ln_save(non_validated_records)

lamindb/models/artifact.py

@@ -1382,7 +1382,10 @@ class Artifact(SQLRecord, IsVersioned, TracksRun, TracksUpdates):
         skip_check_exists = kwargs.pop("skip_check_exists", False)
         if "storage" in kwargs:
             storage = kwargs.pop("storage")
-        elif setup_settings.instance.keep_artifacts_local:
+        elif (
+            setup_settings.instance.keep_artifacts_local
+            and setup_settings.instance._local_storage is not None
+        ):
             storage = setup_settings.instance.local_storage.record
         else:
             storage = setup_settings.instance.storage.record

lamindb/models/transform.py

@@ -317,10 +317,17 @@ class Transform(SQLRecord, IsVersioned):
 
     def delete(self) -> None:
         """Delete."""
+        from .project import TransformProject
+
         # query all runs and delete their artifacts
         runs = Run.filter(transform=self)
         for run in runs:
             delete_run_artifacts(run)
+        # CASCADE doesn't do the job below because run_id might be protected through run__transform=self
+        # hence, proactively delete the labels
+        qs = TransformProject.filter(transform=self)
+        if qs.exists():
+            qs.delete()
         # at this point, all artifacts have been taken care of
         # we can now leverage CASCADE delete
         super().delete()

{lamindb-1.9.0.dist-info → lamindb-1.9.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: lamindb
-Version: 1.9.0
+Version: 1.9.1
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.10,<3.14
@@ -11,7 +11,7 @@ Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
 Requires-Dist: lamin_utils==0.15.0
 Requires-Dist: lamin_cli==1.6.0
-Requires-Dist: lamindb_setup[aws]==1.8.2
+Requires-Dist: lamindb_setup[aws]==1.8.3
 Requires-Dist: pyyaml
 Requires-Dist: pyarrow
 Requires-Dist: pandera>=0.24.0

{lamindb-1.9.0.dist-info → lamindb-1.9.1.dist-info}/RECORD

@@ -1,4 +1,4 @@
-lamindb/__init__.py,sha256=FMnceC5tAe-SFZW19KRUXP9wHJOw4JB2lnjNIHrC4RI,2904
+lamindb/__init__.py,sha256=6vz7PoohgJVcU2XVHyGD3SyzxKQTaJC5IQ591AGza18,2904
 lamindb/_finish.py,sha256=3HVKRw27rQs_S2ior-JX2IU0vUkeG5a6p8XgEgdT8-U,21219
 lamindb/_tracked.py,sha256=-wK7BJv30nf4v2_nH5qDCyxHvug7ih6duQNGxDrj3UE,4447
 lamindb/_view.py,sha256=cod1RnZoLyzMVJcjWjytg78Sf4qsR8IAdqpwzsi8FTw,4950
@@ -40,7 +40,7 @@ lamindb/core/subsettings/_annotation_settings.py,sha256=o-yTYw-NmjFmtehbKU8qnf7t
 lamindb/core/subsettings/_creation_settings.py,sha256=NGHWKqCFSzVNBxAr2VnmdYguiFdW29XUK7T9wRsVshg,906
 lamindb/curators/__init__.py,sha256=WLnaVxrhQGZxGB3pjg-SM4oUu6DaKA78S_J3BfVKLEg,496
 lamindb/curators/_legacy.py,sha256=V2zF1J7jN2Ry7ascH06JytrAQzeOiirg7e4a9d0hpvM,54768
-lamindb/curators/core.py,sha256=EKbKrvviObBVmRREiHCH-jtRDZ9Kf3bmF6GHt0L9nKc,68490
+lamindb/curators/core.py,sha256=OfCSLw6Ngu_HmCSjwRUZrsVwcdq-ge9JL1Wfl0djiyM,68832
 lamindb/examples/__init__.py,sha256=8FnHoBbZmVwiGByHfY6sr069rBQTChFynUeq7O704Ns,580
 lamindb/examples/cellxgene/__init__.py,sha256=Xzxfi_NQcWdK-RrbNFdlIFQFVPG8Qy18ekYx3sOQZeM,161
 lamindb/examples/cellxgene/_cellxgene.py,sha256=bcFg0f0Bur38GKVNjKacCiMwMvJDdDeAk6BVT2WP5GI,8688
@@ -109,7 +109,7 @@ lamindb/models/_from_values.py,sha256=cCGPMDlAbBrdhFW-XrIQVZ10q1LNg4MycYPLOkF0fT
 lamindb/models/_is_versioned.py,sha256=Th2_cBf9UWh27E6ANxg6LGmjBOumXFy7AjH0GG4FoXA,7601
 lamindb/models/_label_manager.py,sha256=O3KaaTEVId5ky3h0aCGg1kDoFFfrovFYlV82YsZZyIs,12127
 lamindb/models/_relations.py,sha256=zHYLujy9vkuB9jVq5844TpzLSP__iYNCQcsl-FzK1Jw,3700
-lamindb/models/artifact.py,sha256=6yTK7_5vPJWuNjQwizDLBwa1z4r4hZzk4UyLpBHeYCo,116434
+lamindb/models/artifact.py,sha256=dSQowK8kg3xUAjtV_zMOPhOXchnUCqcHdryykGWW69A,116525
 lamindb/models/artifact_set.py,sha256=VOZEGDo3m_9Yg_ftx3I2fwdydjHN61X_qV18N6xG4kM,4117
 lamindb/models/can_curate.py,sha256=_6ymHhtc9zpU8O6ozqNDqn7jh87C9JisU_dl2gH2Hpo,29329
 lamindb/models/collection.py,sha256=zNiYzj0K_UgIobWzBY93rekVpZm76p9BJOw7Pz0i8ZE,28356
@@ -124,14 +124,14 @@ lamindb/models/save.py,sha256=jXha2jfY-pWsKuP2dwaEROhUGxhM8fTWQGWAzA_xsM0,16777
 lamindb/models/schema.py,sha256=7l2T_uOi7Lkj4yHuZWml1p7axBn_yNO4IlXkn8M2f9g,48962
 lamindb/models/sqlrecord.py,sha256=6jfBKqGtvT6D2_mWgaxqLWvWzYUGzMW2d8r4nht4vk0,68411
 lamindb/models/storage.py,sha256=0jvuQyJcIMdrZ9qq-vmKkI66libb2DqWjCXNFuvinIM,13518
-lamindb/models/transform.py,sha256=BceBz250AznWf85LefgS2nJNye_xJ0w_jce-mGJDN6Y,12474
+lamindb/models/transform.py,sha256=oXT_uF9CM4vrEt1APbdSUSMxclkxeVq9tjgQRmicqos,12774
 lamindb/models/ulabel.py,sha256=ocAMSKeQcq2Kr6Dq0mxGupOmW1K0pAs19vjDeTEb6vM,9335
 lamindb/setup/__init__.py,sha256=QZ-JF8IzO_ckDOU223lsJrdO5ay7cDFgvCbkLeAuxYA,467
 lamindb/setup/_switch.py,sha256=njZJN__JOhVrBFGClQG1wobdhJJp6l_XzPGKtKSCrfU,434
 lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
 lamindb/setup/errors/__init__.py,sha256=bAHTxOUJW1rm4zpF0Pvqkftn8W6iMGnQ-uyNBu13Nfg,171
 lamindb/setup/types/__init__.py,sha256=ATaosOi6q-cDWB52T69_sRmLMqj8cHfc-vljzZsrJNw,169
-lamindb-1.9.0.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-lamindb-1.9.0.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
-lamindb-1.9.0.dist-info/METADATA,sha256=mQkVAc--IuAbONDCz0Jl9nIzyDFnBw-_--4NmdwjqZY,5198
-lamindb-1.9.0.dist-info/RECORD,,
+lamindb-1.9.1.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+lamindb-1.9.1.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
+lamindb-1.9.1.dist-info/METADATA,sha256=K120hdMhCpm8y3SUQnBVFIk9ZySm5x0OQ60b7KiBgyA,5198
+lamindb-1.9.1.dist-info/RECORD,,