lamindb 1.7a1__py3-none-any.whl → 1.7.1__py3-none-any.whl

lamindb/__init__.py

@@ -108,7 +108,7 @@ Backwards compatibility.
 
 # ruff: noqa: I001
 # denote a release candidate for 0.1.0 with 0.1rc1, 0.1a1, 0.1b1, etc.
-__version__ = "1.7a1"
+__version__ = "1.7.1"
 
 import warnings
 

lamindb/core/_context.py

@@ -334,8 +334,8 @@ class Context:
         Args:
             transform: A transform (stem) `uid` (or record). If `None`, auto-creates a `transform` with its `uid`.
             project: A project (or its `name` or `uid`) for labeling entities.
-            space: A restricted space (or its `name` or `uid`) in which to store artifacts, collections, transforms, and runs.
-                Default: the `"All"` space.
+            space: A restricted space (or its `name` or `uid`) in which to store entities.
+                Default: the `"all"` space. Note that bionty entities ignore this setting and always get written to the `"all"` space.
                 If you want to manually move entities to a different space, set the `.space` field (:doc:`docs:access`).
             branch: A branch (or its `name` or `uid`) on which to store records.
             params: A dictionary of parameters to track for the run.

lamindb/migrations/0115_alter_space_uid.py

@@ -0,0 +1,52 @@
+# Generated by Django 5.2 on 2025-07-06 23:09
+
+from django.db import migrations
+
+import lamindb.base.fields
+
+
+def extenddefault_values(apps, schema_editor):
+    """Lowercase default values for Space and Branch models."""
+    Space = apps.get_model("lamindb", "Space")
+    Branch = apps.get_model("lamindb", "Branch")
+
+    space = Space.objects.get(uid="a")
+    space.uid = 12 * "a"
+    space.save()
+
+    trash_branch = Branch.objects.get(uid="t")
+    trash_branch.uid = 12 * "t"
+    trash_branch.save()
+
+    archive_branch = Branch.objects.get(uid="a")
+    archive_branch.uid = 12 * "a"
+    archive_branch.save()
+
+    main_branch = Branch.objects.get(uid="m")
+    main_branch.uid = 12 * "m"
+    main_branch.save()
+
+
+class Migration(migrations.Migration):
+    dependencies = [
+        ("lamindb", "0114_alter_run__status_code"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="space",
+            name="uid",
+            field=lamindb.base.fields.CharField(
+                blank=True,
+                db_default="aaaaaaaaaaaa",
+                db_index=True,
+                default="aaaaaaaaaaaaa",
+                editable=False,
+                max_length=12,
+                unique=True,
+            ),
+        ),
+        migrations.RunPython(
+            extenddefault_values,
+        ),
+    ]

lamindb/migrations/{0114_squashed.py → 0115_squashed.py}

@@ -136,6 +136,7 @@ class Migration(migrations.Migration):
         ("lamindb", "0112_alter_recordartifact_feature_and_more"),
         ("lamindb", "0113_lower_case_branch_and_space_names"),
         ("lamindb", "0114_alter_run__status_code"),
+        ("lamindb", "0115_alter_space_uid"),
     ]
 
     dependencies = []  # type: ignore
@@ -214,9 +215,9 @@ class Migration(migrations.Migration):
                     "uid",
                     lamindb.base.fields.CharField(
                         blank=True,
-                        db_default="A",
+                        db_default="aaaaaaaaaaaa",
                         db_index=True,
-                        default="A",
+                        default="aaaaaaaaaaaaa",
                         editable=False,
                         max_length=12,
                         unique=True,

lamindb/models/sqlrecord.py

@@ -661,43 +661,53 @@ class BaseSQLRecord(models.Model, metaclass=Registry):
     def __init__(self, *args, **kwargs):
         skip_validation = kwargs.pop("_skip_validation", False)
         if not args:
-            if self.__class__.__name__ in {
-                "Artifact",
-                "Collection",
-                "Transform",
-                "Run",
-            }:
+            if (
+                issubclass(self.__class__, SQLRecord)
+                and self.__class__.__name__ != "Storage"
+                # do not save bionty entities in restricted spaces by default
+                and self.__class__.__module__ != "bionty.models"
+            ):
                 from lamindb import context as run_context
 
                 if run_context.space is not None:
+                    current_space = run_context.space
+                elif setup_settings.space is not None:
+                    current_space = setup_settings.space
+
+                if current_space is not None:
                     if "space_id" in kwargs:
                         # space_id takes precedence over space
                         # https://claude.ai/share/f045e5dc-0143-4bc5-b8a4-38309229f75e
                         if kwargs["space_id"] == 1:  # ignore default space
                             kwargs.pop("space_id")
-                            kwargs["space"] = run_context.space
+                            kwargs["space"] = current_space
                     elif "space" in kwargs:
                         if kwargs["space"] is None:
-                            kwargs["space"] = run_context.space
+                            kwargs["space"] = current_space
                     else:
-                        kwargs["space"] = run_context.space
+                        kwargs["space"] = current_space
             if issubclass(
                 self.__class__, SQLRecord
             ) and self.__class__.__name__ not in {"Storage", "Source"}:
                 from lamindb import context as run_context
 
                 if run_context.branch is not None:
+                    current_branch = run_context.branch
+                elif setup_settings.branch is not None:
+                    current_branch = setup_settings.branch
+
+                if current_branch is not None:
                     # branch_id takes precedence over branch
                     # https://claude.ai/share/f045e5dc-0143-4bc5-b8a4-38309229f75e
                     if "branch_id" in kwargs:
                         if kwargs["branch_id"] == 1:  # ignore default branch
                             kwargs.pop("branch_id")
-                            kwargs["branch"] = run_context.branch
+                            kwargs["branch"] = current_branch
                     elif "branch" in kwargs:
                         if kwargs["branch"] is None:
-                            kwargs["branch"] = run_context.branch
+                            kwargs["branch"] = current_branch
                     else:
-                        kwargs["branch"] = run_context.branch
+                        kwargs["branch"] = current_branch
             if skip_validation:
                 super().__init__(**kwargs)
             else:
@@ -952,8 +962,8 @@ class Space(BaseSQLRecord):
         editable=False,
         unique=True,
         max_length=12,
-        default="A",
-        db_default="A",
+        default="aaaaaaaaaaaaa",
+        db_default="aaaaaaaaaaaa",
         db_index=True,
     )
     """Universal id."""

lamindb/setup/__init__.py

@@ -8,6 +8,7 @@ from lamindb_setup import (
 )
 
 from . import core, errors, types
+from ._switch import switch  # noqa: F401
 
 del connect  # we have this at the root level, hence, we don't want it here
 __doc__ = _lamindb_setup.__doc__.replace("lamindb_setup", "lamindb.setup")

lamindb/setup/_switch.py

@@ -0,0 +1,16 @@
+from __future__ import annotations
+
+from typing import TYPE_CHECKING
+
+from lamindb_setup import settings
+
+if TYPE_CHECKING:
+    from lamindb.models import Branch, Space
+
+
+def switch(*, branch: str | Branch | None = None, space: str | Space | None = None):
+    """Switch to a branch or space, create if not exists."""
+    if branch is not None:
+        settings.branch = branch
+    if space is not None:
+        settings.space = space

{lamindb-1.7a1.dist-info → lamindb-1.7.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: lamindb
-Version: 1.7a1
+Version: 1.7.1
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.10,<3.14
@@ -10,8 +10,8 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
 Requires-Dist: lamin_utils==0.15.0
-Requires-Dist: lamin_cli==1.5.1
-Requires-Dist: lamindb_setup[aws]==1.7.0
+Requires-Dist: lamin_cli==1.5.4
+Requires-Dist: lamindb_setup[aws]==1.7.3
 Requires-Dist: pyyaml
 Requires-Dist: pyarrow
 Requires-Dist: pandera>=0.24.0

{lamindb-1.7a1.dist-info → lamindb-1.7.1.dist-info}/RECORD

@@ -1,4 +1,4 @@
-lamindb/__init__.py,sha256=FzHtSn1eMOasSWUktr67iYTP9M5kqs1SF325l6orecQ,2904
+lamindb/__init__.py,sha256=AbAQWHFKQBqEh_bjTl3Vby-9IxDwDvg4k3RYbT7eDLs,2904
 lamindb/_finish.py,sha256=MZKXiGk_NFRyc693OXitqq7Qd9bGojcBe26JkingJGI,20859
 lamindb/_tracked.py,sha256=-wK7BJv30nf4v2_nH5qDCyxHvug7ih6duQNGxDrj3UE,4447
 lamindb/_view.py,sha256=cod1RnZoLyzMVJcjWjytg78Sf4qsR8IAdqpwzsi8FTw,4950
@@ -12,7 +12,7 @@ lamindb/base/uids.py,sha256=cLBi5mIlsf1ltkTb17r1FLzlOjlGmjvsCygoVJHQ-A8,2116
 lamindb/base/users.py,sha256=8MSmAvCKoUF15YsDE6BGLBXsFWpfoEEg8iDTKZ7kD48,848
 lamindb/core/__init__.py,sha256=aaBq0UVjNolMynbT1V5hB6UrJm1tK0M6WHu_r6em9_4,604
 lamindb/core/_compat.py,sha256=NLnKk1qk4xdgMV-QwFDnBnbio02ujjlF86icvhpdv4c,2029
-lamindb/core/_context.py,sha256=Lv6Ag5p7dQgIiAKlJM8VKPVIAOlBXxR_DeamVKq-vS4,39736
+lamindb/core/_context.py,sha256=pRcpBW1gsk3xBKL6dV2BiyHV_Iz0bGjSGDXkBsZz6Hc,39791
 lamindb/core/_mapped_collection.py,sha256=osquwC6ee0wJ_I6O-8AZwnQUa_r9zqa0MN82Q-nBI3Y,25746
 lamindb/core/_settings.py,sha256=7Dw1SOtUCfyg3VyxgV696UYjJYmVogyiNM2P1ZL9RMk,7937
 lamindb/core/_sync_git.py,sha256=Z7keuyS5X7CAj285sEbZIFExZF9mtjGH8DzKwz3xhHw,5881
@@ -97,7 +97,8 @@ lamindb/migrations/0111_remove_record__sort_order.py,sha256=m5CC_VXupeUywupKQ74R
 lamindb/migrations/0112_alter_recordartifact_feature_and_more.py,sha256=19AothLLch_iY5W5YhH3G-paNFSlqTeGwVfYX78o8Hc,3458
 lamindb/migrations/0113_lower_case_branch_and_space_names.py,sha256=Xt2krstx3t30iTi2z0qTCBNteDA5Wy9L-thRXJSeUA8,1734
 lamindb/migrations/0114_alter_run__status_code.py,sha256=KkGecSBJElA3LBnhSK5_rFpcFridOuv6BhM8DCYqTKw,612
-lamindb/migrations/0114_squashed.py,sha256=O_iKRrE4wgcrcJjXuOIigE5EfunJeY03Ev9INsyaBus,162867
+lamindb/migrations/0115_alter_space_uid.py,sha256=18fCP8d31Ox1KxSSmfzU-W3lSpS3xtiaBNbPeHQiuTM,1332
+lamindb/migrations/0115_squashed.py,sha256=gDjKt5S-Uk5NK72JPnsB1zD_kyAVIXR5DFEBHNAUcr4,162935
 lamindb/migrations/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 lamindb/models/__init__.py,sha256=mtjZH0x31aV463YaUef8ZvdQHlGa6SZr_thsrlbdkCg,2419
 lamindb/models/_describe.py,sha256=kxw7E_a5FqAI_GEH0QDGsBywQtmZ9DqQrJxnFmVJDt8,7717
@@ -120,15 +121,16 @@ lamindb/models/record.py,sha256=syOBBefZhlqZpoVJD32uqzEzbwXiOboAOA3AlGaOkhE,1205
 lamindb/models/run.py,sha256=3xCAJnxK4iNeFlFz1bAxYDnRGU4HnRpDfxq4MwB6cPw,15565
 lamindb/models/save.py,sha256=jXha2jfY-pWsKuP2dwaEROhUGxhM8fTWQGWAzA_xsM0,16777
 lamindb/models/schema.py,sha256=oI3_eUYTYrMofOVJTCCKVkGr4L6VWpIxx5L4fauTtn8,48244
-lamindb/models/sqlrecord.py,sha256=bnsDXXqnfUMdhYwCPL82xLxR8JuJJUpzwsIbkYbuSl4,67588
+lamindb/models/sqlrecord.py,sha256=FqtK9epCiFPhqr2DI0W6OmU621wU7FVh9rXouGK3_3w,68136
 lamindb/models/storage.py,sha256=D5wVikrFiQqrDIOVB0nJvX2f5nicrFHIBlan7AMqDn0,11387
 lamindb/models/transform.py,sha256=BceBz250AznWf85LefgS2nJNye_xJ0w_jce-mGJDN6Y,12474
 lamindb/models/ulabel.py,sha256=ocAMSKeQcq2Kr6Dq0mxGupOmW1K0pAs19vjDeTEb6vM,9335
-lamindb/setup/__init__.py,sha256=VOkMk9WVySxj0cHj9ASJnjpjhJiDOg2hA9HjNNzoxQE,425
+lamindb/setup/__init__.py,sha256=QZ-JF8IzO_ckDOU223lsJrdO5ay7cDFgvCbkLeAuxYA,467
+lamindb/setup/_switch.py,sha256=njZJN__JOhVrBFGClQG1wobdhJJp6l_XzPGKtKSCrfU,434
 lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
 lamindb/setup/errors/__init__.py,sha256=bAHTxOUJW1rm4zpF0Pvqkftn8W6iMGnQ-uyNBu13Nfg,171
 lamindb/setup/types/__init__.py,sha256=ATaosOi6q-cDWB52T69_sRmLMqj8cHfc-vljzZsrJNw,169
-lamindb-1.7a1.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-lamindb-1.7a1.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
-lamindb-1.7a1.dist-info/METADATA,sha256=a12fDALiPF1EygwixlW206Yl0zTnPznU9BORJr5NMQs,2669
-lamindb-1.7a1.dist-info/RECORD,,
+lamindb-1.7.1.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+lamindb-1.7.1.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
+lamindb-1.7.1.dist-info/METADATA,sha256=HDXe5RSeh62HIA03TRjUWqnNCRKtFfbegaG1rhy_8bI,2669
+lamindb-1.7.1.dist-info/RECORD,,