lamindb 1.5.1__py3-none-any.whl → 1.5.3__py3-none-any.whl

lamindb/__init__.py

@@ -94,7 +94,7 @@ Low-level functionality.
 
 # ruff: noqa: I001
 # denote a release candidate for 0.1.0 with 0.1rc1, 0.1a1, 0.1b1, etc.
-__version__ = "1.5.1"
+__version__ = "1.5.3"
 
 import warnings
 

lamindb/curators/core.py

@@ -305,6 +305,8 @@ class SlotsCurator(Curator):
         for slot, curator in self._slots.items():
             logger.info(f"validating slot {slot} ...")
             curator.validate()
+        # set _is_validated to True as no slot raised an error
+        self._is_validated = True
 
     @doc_args(SAVE_ARTIFACT_DOCSTRING)
     def save_artifact(

lamindb/models/artifact.py

@@ -2360,6 +2360,11 @@ class Artifact(Record, IsVersioned, TracksRun, TracksUpdates):
 
         if hasattr(self, "_memory_rep") and self._memory_rep is not None:
             access_memory = self._memory_rep
+            # SpatialData objects zarr stores are moved when saved
+            # SpatialData's __repr__ method attempts to access information from the old path
+            # Therefore, we need to update the in-memory path to the now moved Artifact storage path
+            if access_memory.__class__.__name__ == "SpatialData":
+                access_memory.path = self._cache_path
         else:
             filepath, cache_key = filepath_cache_key_from_artifact(
                 self, using_key=settings._using_key
@@ -2392,6 +2397,7 @@ class Artifact(Record, IsVersioned, TracksRun, TracksUpdates):
                 access_memory = load_to_memory(cache_path, **kwargs)
         # only call if load is successfull
         _track_run_input(self, is_run_input)
+
         return access_memory
 
     def cache(

lamindb/models/schema.py

@@ -856,7 +856,7 @@ class Schema(Record, CanCurate, TracksRun):
         """Save."""
         from .save import bulk_create
 
-        if not self._state.adding:
+        if self.pk is not None:
             features = (
                 self._features[1]
                 if hasattr(self, "_features")

{lamindb-1.5.1.dist-info → lamindb-1.5.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: lamindb
-Version: 1.5.1
+Version: 1.5.3
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.10,<3.14

{lamindb-1.5.1.dist-info → lamindb-1.5.3.dist-info}/RECORD

@@ -1,4 +1,4 @@
-lamindb/__init__.py,sha256=LgGBliPC6cKo95tRnosq_SuMBgRGjlQF0wNmEBHuo10,2676
+lamindb/__init__.py,sha256=Rkr5XTPlBm9eIYCFisukL-u59iT4hl15dFLQPPpj6gQ,2676
 lamindb/_finish.py,sha256=Wqb846pCErsx5ZPulAfdF5PJbWzgAdfbuYuf4FndfhY,20124
 lamindb/_tracked.py,sha256=fse_H0ehc9WvU_l1572g7qya0sRdWCh22LZkq0XU4ic,4445
 lamindb/_view.py,sha256=kSmG8X4ULQZEKxY7ESnthQqsUf1DEzoYGeTLYRU1I7s,4938
@@ -40,7 +40,7 @@ lamindb/core/subsettings/_annotation_settings.py,sha256=o-yTYw-NmjFmtehbKU8qnf7t
 lamindb/core/subsettings/_creation_settings.py,sha256=NGHWKqCFSzVNBxAr2VnmdYguiFdW29XUK7T9wRsVshg,906
 lamindb/curators/__init__.py,sha256=ZexikeaVunT24TqsR1NsSOCSBXDBigfGtFT55tBwqS8,371
 lamindb/curators/_legacy.py,sha256=dTim3YFvdYyMsn6y8qSYkbCnnEI4tlaevN2-OO_qEx8,76174
-lamindb/curators/core.py,sha256=hbmVGXRwBNxKRRwpS9h9JR7AiVWZzqgI848FBdekDAQ,59818
+lamindb/curators/core.py,sha256=YwMcKV2rAEhTav_fBixMM_sON2iUeu8JHGgxgcTjBn4,59915
 lamindb/curators/_cellxgene_schemas/__init__.py,sha256=zqlFzMNMDGEBe6DV0gBsBMpfc9UHvNv1EpBsz_ktMoA,7502
 lamindb/curators/_cellxgene_schemas/schema_versions.csv,sha256=X9rmO88TW1Fht1f5mJs0JdW-VPvyKSajpf8lHNeECj4,1680
 lamindb/examples/__init__.py,sha256=DGImiuWYDvwxh78p5FCwQWClEwsE3ODLU49i_NqbW0c,533
@@ -84,7 +84,7 @@ lamindb/models/_from_values.py,sha256=-8l3_d2Nm14kzi1FjEYvBwyuucL-ZcDSjlMufIb4Xo
 lamindb/models/_is_versioned.py,sha256=Th2_cBf9UWh27E6ANxg6LGmjBOumXFy7AjH0GG4FoXA,7601
 lamindb/models/_label_manager.py,sha256=QOT6mz_rzPJ5p7hM1l-XzDWzyWUERpmAan2n_ma5wpI,12112
 lamindb/models/_relations.py,sha256=ONjHPiWIa_Ur7zMNTa_9Uw7K-366GORyPvGoVjf4EQs,3681
-lamindb/models/artifact.py,sha256=JDV9I5Pf47UgsyGGd4xgEvzH6sEmG37De7vJouaR4B0,110183
+lamindb/models/artifact.py,sha256=6F_jcZiG1LeLT5HKSPCBiKUU-ItFM24aHyqWrwl1egc,110565
 lamindb/models/artifact_set.py,sha256=VOZEGDo3m_9Yg_ftx3I2fwdydjHN61X_qV18N6xG4kM,4117
 lamindb/models/can_curate.py,sha256=5dXHCRoJzLg2y9YDhpH7CyWexxliFHilwJ_UPjjZwRI,29188
 lamindb/models/collection.py,sha256=TNXnrR86ZgsSfEvaOuAEItgZ947klTXXZspa7hpyVmw,27288
@@ -98,12 +98,12 @@ lamindb/models/query_set.py,sha256=xKh5QjAlHunktB1S4x9f42Fg0SP_-sK7XlyxStIRDSo,3
 lamindb/models/record.py,sha256=fomXuOcqkfiYF3zEdiUkYw9x00qP5flM7oseUUomhIo,61354
 lamindb/models/run.py,sha256=FzqVQhYj4DXqlnmHvNIziOCAlx9K0wISXBLpom1Yb74,20688
 lamindb/models/save.py,sha256=JTAaorKECx0ZeHaX0H9Yt4MDwOsT9F813WbSJkBIPaU,13339
-lamindb/models/schema.py,sha256=5_31iIPh19eJn0rm1OTeFk0gtD0YUPrTbiPsglKWOeo,47753
+lamindb/models/schema.py,sha256=RMPiOj3gwaEhFA7lHEOWL7kzMz_comYSyuyIrstLzhs,47750
 lamindb/models/transform.py,sha256=LGnTR7g_rAx3YFAFv4l4_UzabruKQlnui1Y3tlWHwXk,12731
 lamindb/models/ulabel.py,sha256=yn9ttz28MqDBh6ZgwH7cty6GHCJOzLJn2IEpspYosDo,8793
 lamindb/setup/__init__.py,sha256=OwZpZzPDv5lPPGXZP7-zK6UdO4FHvvuBh439yZvIp3A,410
 lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
-lamindb-1.5.1.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-lamindb-1.5.1.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
-lamindb-1.5.1.dist-info/METADATA,sha256=juLd0ioSI6_wrvJOzGLsfY_8L019WlgLqEnIDj2OolA,2782
-lamindb-1.5.1.dist-info/RECORD,,
+lamindb-1.5.3.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+lamindb-1.5.3.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
+lamindb-1.5.3.dist-info/METADATA,sha256=4cVJtBRtnn12zf-ZnlXQbKcwZmJOCSnD0nxYkrGsxuw,2782
+lamindb-1.5.3.dist-info/RECORD,,