lamindb 1.3.2__py3-none-any.whl → 1.5.0__py3-none-any.whl

lamindb/models/transform.py

@@ -16,8 +16,7 @@ from lamindb.base.fields import (
 )
 from lamindb.base.users import current_user_id
 
-from ..errors import InconsistentKey
-from ..models._is_versioned import message_update_key_in_version_family, process_revises
+from ..models._is_versioned import process_revises
 from ._is_versioned import IsVersioned
 from .record import Record, init_self_from_db, update_attributes
 from .run import Run, User, delete_run_artifacts
@@ -36,7 +35,7 @@ if TYPE_CHECKING:
 # does not inherit from TracksRun because the Transform
 # is needed to define a run
 class Transform(Record, IsVersioned):
-    """Data transformations.
+    """Data transformations such as scripts, notebooks, functions, or pipelines.
 
     A "transform" can refer to a Python function, a script, a notebook, or a
     pipeline. If you execute a transform, you generate a run
@@ -281,15 +280,7 @@ class Transform(Record, IsVersioned):
             update_attributes(self, {"description": description})
             return None
         if revises is not None and key is not None and revises.key != key:
-            note = message_update_key_in_version_family(
-                suid=revises.stem_uid,
-                existing_key=revises.key,
-                new_key=key,
-                registry="Transform",
-            )
-            raise InconsistentKey(
-                f"`key` is '{key}', but `revises.key` is '{revises.key}'\n\nEither do *not* pass `key`.\n\n{note}"
-            )
+            logger.important(f"renaming transform {revises.key} to {key}")
         new_uid, version, key, description, revises = process_revises(
             revises, version, key, description, Transform
         )
@@ -349,9 +340,9 @@ class Transform(Record, IsVersioned):
 
     def view_lineage(self, with_successors: bool = False, distance: int = 5):
         """View lineage of transforms."""
-        from .has_parents import _view_parents
+        from .has_parents import view_parents
 
-        return _view_parents(
+        return view_parents(
             record=self,
             field="key",
             with_children=with_successors,

lamindb/models/ulabel.py

@@ -48,9 +48,8 @@ class ULabel(Record, HasParents, CanCurate, TracksRun, TracksUpdates):
     Often, a ulabel is measured *within* a dataset. For instance, an artifact
     might characterize 2 species of the Iris flower (`"setosa"` &
     `"versicolor"`) measured by a `"species"` feature. Use the
-    :class:`~lamindb.Curator` flow to automatically parse, validate, and
-    annotate with labels that are contained in `DataFrame` or `AnnData`
-    artifacts.
+    :class:`~lamindb.curators.DataFrameCurator` flow to automatically parse, validate, and
+    annotate with labels that are contained in `DataFrame` objects.
 
     .. note::
 
@@ -82,9 +81,9 @@ class ULabel(Record, HasParents, CanCurate, TracksRun, TracksUpdates):
 
         >>> artifact.ulabels.add(ulabel)
 
-        Query by `ULabel`:
+        Query an artifact by label:
 
-        >>> ln.Artifact.filter(ulabels=train_split)
+        >>> ln.Artifact.filter(ulabels=train_split).df()
     """
 
     class Meta(Record.Meta, TracksRun.Meta, TracksUpdates.Meta):
@@ -176,6 +175,8 @@ class ULabel(Record, HasParents, CanCurate, TracksRun, TracksUpdates):
         description: str | None = kwargs.pop("description", None)
         reference: str | None = kwargs.pop("reference", None)
         reference_type: str | None = kwargs.pop("reference_type", None)
+        _skip_validation = kwargs.pop("_skip_validation", False)
+        _aux = kwargs.pop("_aux", None)
         if len(kwargs) > 0:
             valid_keywords = ", ".join([val[0] for val in _get_record_kwargs(ULabel)])
             raise FieldValidationError(
@@ -188,6 +189,8 @@ class ULabel(Record, HasParents, CanCurate, TracksRun, TracksUpdates):
             description=description,
             reference=reference,
             reference_type=reference_type,
+            _skip_validation=_skip_validation,
+            _aux=_aux,
         )
 
 

{lamindb-1.3.2.dist-info → lamindb-1.5.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: lamindb
-Version: 1.3.2
+Version: 1.5.0
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.10,<3.14
@@ -9,9 +9,9 @@ Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
-Requires-Dist: lamin_utils==0.13.11
-Requires-Dist: lamin_cli==1.2.0
-Requires-Dist: lamindb_setup[aws]==1.4.1
+Requires-Dist: lamin_utils==0.14.0
+Requires-Dist: lamin_cli==1.4.0
+Requires-Dist: lamindb_setup[aws]==1.5.2
 Requires-Dist: pyyaml
 Requires-Dist: pyarrow
 Requires-Dist: pandera
@@ -19,11 +19,11 @@ Requires-Dist: typing_extensions!=4.6.0
 Requires-Dist: python-dateutil
 Requires-Dist: scipy<1.15.0
 Requires-Dist: pandas>=2.0.0
-Requires-Dist: anndata>=0.8.0,<=0.11.3
+Requires-Dist: anndata>=0.8.0,<=0.11.4
 Requires-Dist: fsspec
 Requires-Dist: graphviz
 Requires-Dist: psycopg2-binary
-Requires-Dist: bionty>=1.2.1 ; extra == "bionty"
+Requires-Dist: bionty>=1.3.2 ; extra == "bionty"
 Requires-Dist: cellregistry ; extra == "cellregistry"
 Requires-Dist: clinicore ; extra == "clinicore"
 Requires-Dist: tomlkit ; extra == "dev"
@@ -40,12 +40,13 @@ Requires-Dist: faker-biology ; extra == "dev"
 Requires-Dist: django-schema-graph ; extra == "erdiagram"
 Requires-Dist: readfcs>=2.0.1 ; extra == "fcs"
 Requires-Dist: lamindb_setup[gcp] ; extra == "gcp"
-Requires-Dist: nbproject==0.10.6 ; extra == "jupyter"
+Requires-Dist: nbproject==0.11.1 ; extra == "jupyter"
 Requires-Dist: jupytext ; extra == "jupyter"
 Requires-Dist: nbconvert>=7.2.1 ; extra == "jupyter"
 Requires-Dist: mistune!=3.1.0 ; extra == "jupyter"
 Requires-Dist: omop ; extra == "omop"
 Requires-Dist: wetlab ; extra == "wetlab"
+Requires-Dist: numcodecs<0.16.0 ; extra == "zarr"
 Requires-Dist: zarr>=2.16.0,<3.0.0a0 ; extra == "zarr"
 Project-URL: Home, https://github.com/laminlabs/lamindb
 Provides-Extra: bionty

lamindb-1.5.0.dist-info/RECORD

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