lamindb 1.11.2__py3-none-any.whl → 1.11.3__py3-none-any.whl

lamindb/__init__.py

@@ -114,7 +114,7 @@ Backwards compatibility.
 
 # ruff: noqa: I001
 # denote a release candidate for 0.1.0 with 0.1rc1, 0.1a1, 0.1b1, etc.
-__version__ = "1.11.2"
+__version__ = "1.11.3"
 
 import warnings as _warnings
 

lamindb/models/schema.py

@@ -258,6 +258,12 @@ class Schema(SQLRecord, CanCurate, TracksRun):
 
     Composite schemas can have multiple slots, e.g., for an `AnnData`, one schema for slot `obs` and another one for `var`.
 
+    To create a schema, one of the following must be passed:
+    - `features`: A list of :class:`~lamindb.Feature` records, e.g., `[Feature(...), Feature(...)]`.
+    - `itype`: A registry field, e.g., `Feature` or `bionty.Gene.ensembl_gene_id`, to constrain feature identifiers to be valid identifiers of the registry.
+    - `slots`: A dictionary mapping slot names to :class:`~lamindb.Schema` objects, e.g., `{"obs": Schema(...), "var": Schema(...), "obsm": Schema(...)}`.
+    - `is_type=True`: To create a schema type, e.g., `ln.Schema(name="ProteinPanel", is_type=True)`.
+
     Args:
         features: `list[SQLRecord] | list[tuple[Feature, dict]] | None = None` Feature
             records, e.g., `[Feature(...), Feature(...)]` or Features with their config, e.g., `[Feature(...).with_config(optional=True)]`.
@@ -565,6 +571,10 @@ class Schema(SQLRecord, CanCurate, TracksRun):
             coerce_dtype=coerce_dtype,
             n_features=n_features,
         )
+        if not features and not slots and not is_type and not itype:
+            raise InvalidArgument(
+                "Please pass features or slots or itype or set is_type=True"
+            )
         if not is_type:
             schema = (
                 Schema.objects.using(using)
@@ -1211,12 +1221,14 @@ def get_type_str(dtype: str | None) -> str | None:
     return type_str
 
 
-def _get_related_name(self: Schema) -> str:
+def _get_related_name(self: Schema) -> str | None:
     related_models = dict_related_model_to_related_name(self, instance=self._state.db)
-    related_name = related_models.get(
-        parse_cat_dtype(self.itype, is_itype=True)["registry_str"]
-    )
-    return related_name
+    if self.itype:
+        related_name = related_models.get(
+            parse_cat_dtype(self.itype, is_itype=True)["registry_str"]
+        )
+        return related_name
+    return None
 
 
 class SchemaFeature(BaseSQLRecord, IsLink):

{lamindb-1.11.2.dist-info → lamindb-1.11.3.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: lamindb
-Version: 1.11.2
+Version: 1.11.3
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.10,<3.14
@@ -10,8 +10,8 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
 Requires-Dist: lamin_utils==0.15.0
-Requires-Dist: lamin_cli==1.7.1
-Requires-Dist: lamindb_setup[aws]==1.10.1
+Requires-Dist: lamin_cli==1.7.2
+Requires-Dist: lamindb_setup[aws]==1.10.2
 Requires-Dist: bionty>=1.7a1
 Requires-Dist: wetlab>=1.5a1
 Requires-Dist: nbproject==0.11.1

{lamindb-1.11.2.dist-info → lamindb-1.11.3.dist-info}/RECORD

@@ -1,4 +1,4 @@
-lamindb/__init__.py,sha256=HGxNpCYe-NeHQHiQXY8bEEfDXbH0zN_ucGrXIEO7cBw,3241
+lamindb/__init__.py,sha256=HMUumigBGh4kV575MUCUvTam38t9r89FrswKHngTzgE,3241
 lamindb/_finish.py,sha256=4KkFyb9d-GEGjDw_zDrnGt_bq3auQ_OQu0hV-2U73AQ,21355
 lamindb/_tracked.py,sha256=fls9yd7EEGO9Ni51kA_pcBkeLpzm2HZrWtwYGQequNE,4395
 lamindb/_view.py,sha256=GOKTfwnEaly9fdeWo9SlhYRc3UWEyLDmTlIUzjFXMYY,4960
@@ -132,7 +132,7 @@ lamindb/models/query_set.py,sha256=zwMlYRfjvAQ4NjIKpk19ipiP43UhGiUoU2wxntnBDUY,3
 lamindb/models/record.py,sha256=2eKEDqpiX5-aN2kUVXLuTVvQUspqQ5h10onbQM6Ta7g,13041
 lamindb/models/run.py,sha256=LVZ2z5QV4aVYYsqGcLmMfqvPpKj4EGGHVts_RR8_c-E,14443
 lamindb/models/save.py,sha256=CEifxocJuoLIuapqtiGk-eKvXfQSK4v389CWBo4FxOA,17264
-lamindb/models/schema.py,sha256=LQuPQhyLitloRGxq6DWZMHcR-xDZY1NctPHjrC6t1iw,49827
+lamindb/models/schema.py,sha256=2sULbJ-3bRkYvkhKImV3vbC5U_dW5IVzN6qYdS1n5y0,50656
 lamindb/models/sqlrecord.py,sha256=kL2YS0lAENLXVMC5bzQuOZrRpujdLsBCJCf0sX_4PlE,72686
 lamindb/models/storage.py,sha256=n7jth0RQ19K0W8ICbrAO942d5jBm1-h7DsrSjMJgAB0,15551
 lamindb/models/transform.py,sha256=FcIPqmSk1hahg2Cr8q6lm1kKpbdvu2JUceSlPIV9Dww,12780
@@ -142,7 +142,7 @@ lamindb/setup/_switch.py,sha256=njZJN__JOhVrBFGClQG1wobdhJJp6l_XzPGKtKSCrfU,434
 lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
 lamindb/setup/errors/__init__.py,sha256=bAHTxOUJW1rm4zpF0Pvqkftn8W6iMGnQ-uyNBu13Nfg,171
 lamindb/setup/types/__init__.py,sha256=ATaosOi6q-cDWB52T69_sRmLMqj8cHfc-vljzZsrJNw,169
-lamindb-1.11.2.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-lamindb-1.11.2.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
-lamindb-1.11.2.dist-info/METADATA,sha256=69LKvBDk40m1gfwl-DIpwIxQqCxNt5zPWf0zuIz9pHc,8552
-lamindb-1.11.2.dist-info/RECORD,,
+lamindb-1.11.3.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+lamindb-1.11.3.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
+lamindb-1.11.3.dist-info/METADATA,sha256=FxBbZm4UuBjbwipN7ePcA9bdTVEcKTEPgo0GI-2tu8k,8552
+lamindb-1.11.3.dist-info/RECORD,,