lamindb 1.11.0__py3-none-any.whl → 1.11.1__py3-none-any.whl

lamindb/__init__.py

@@ -114,7 +114,7 @@ Backwards compatibility.
 
 # ruff: noqa: I001
 # denote a release candidate for 0.1.0 with 0.1rc1, 0.1a1, 0.1b1, etc.
-__version__ = "1.11.0"
+__version__ = "1.11.1"
 
 import warnings as _warnings
 

lamindb/core/_context.py

@@ -600,9 +600,11 @@ class Context:
         if pypackages is None:
             pypackages = True
         description = None
+        if path.suffix == ".ipynb" and path.stem.startswith("Untitled"):
+            raise RuntimeError(
+                "Your notebook is untitled, please rename it before tracking"
+            )
         path_str = path.as_posix()
-        if path_str.endswith("Untitled.ipynb"):
-            raise RuntimeError("Please rename your notebook before tracking it")
         if path_str.startswith("/fileId="):
             logger.warning("tracking on Google Colab is experimental")
             path_str = get_notebook_key_colab()

lamindb/models/artifact.py

@@ -10,7 +10,7 @@ import fsspec
 import lamindb_setup as ln_setup
 import pandas as pd
 from anndata import AnnData
-from django.db import connections, models
+from django.db import ProgrammingError, connections, models
 from django.db.models import CASCADE, PROTECT, Q
 from django.db.models.functions import Length
 from lamin_utils import colors, logger
@@ -32,7 +32,7 @@ from lamindb.base.fields import (
     CharField,
     ForeignKey,
 )
-from lamindb.errors import FieldValidationError, UnknownStorageLocation
+from lamindb.errors import FieldValidationError, NoWriteAccess, UnknownStorageLocation
 from lamindb.models.query_set import QuerySet
 
 from ..base.users import current_user_id
@@ -294,6 +294,7 @@ def process_data(
 
 def get_stat_or_artifact(
     path: UPath,
+    storage: Record,
     key: str | None = None,
     check_hash: bool = True,
     is_replace: bool = False,
@@ -331,14 +332,14 @@ def get_stat_or_artifact(
     else:
         result = (
             Artifact.objects.using(instance)
-            .filter(Q(hash=hash) | Q(key=key, storage=settings.storage.record))
+            .filter(Q(hash=hash) | Q(key=key, storage=storage))
             .order_by("-created_at")
             .all()
         )
         artifact_with_same_hash_exists = result.filter(hash=hash).count() > 0
         if not artifact_with_same_hash_exists and len(result) > 0:
             logger.important(
-                f"creating new artifact version for key='{key}' (storage: '{settings.storage.root_as_str}')"
+                f"creating new artifact version for key='{key}' (storage: '{storage.root}')"
             )
             previous_artifact_version = result[0]
     if artifact_with_same_hash_exists:
@@ -438,6 +439,7 @@ def get_artifact_kwargs_from_data(
 
     stat_or_artifact = get_stat_or_artifact(
         path=path,
+        storage=storage,
         key=key,
         instance=using_key,
         is_replace=is_replace,
@@ -3072,8 +3074,12 @@ def _track_run_input(
                 )
                 data.save()
                 is_valid = True
+            data_run_id, run_id = data.run_id, run.id
+            different_runs = (data_run_id != run_id) or (
+                data_run_id is None and run_id is None
+            )
             return (
-                data.run_id != run.id
+                different_runs
                 and not data._state.adding  # this seems duplicated with data._state.db is None
                 and is_valid
             )
@@ -3118,8 +3124,9 @@ def _track_run_input(
     if track_run_input:
         if run is None:
             raise ValueError("No run context set. Call `ln.track()`.")
-        # avoid adding the same run twice
-        run.save()
+        if run._state.adding:
+            # avoid adding the same run twice
+            run.save()
         if data_class_name == "artifact":
             IsLink = run.input_artifacts.through
             links = [
@@ -3131,7 +3138,41 @@ def _track_run_input(
                 IsLink(run_id=run.id, collection_id=data_id)
                 for data_id in input_data_ids
             ]
-        IsLink.objects.bulk_create(links, ignore_conflicts=True)
+        try:
+            IsLink.objects.bulk_create(links, ignore_conflicts=True)
+        except ProgrammingError as e:
+            if "new row violates row-level security policy" in str(e):
+                instance = setup_settings.instance
+                available_spaces = instance.available_spaces
+                if available_spaces is None:
+                    raise NoWriteAccess(
+                        f"You’re not allowed to write to the instance {instance.slug}.\n"
+                        "Please contact administrators of the instance if you need write access."
+                    ) from None
+                write_access_spaces = (
+                    available_spaces["admin"] + available_spaces["write"]
+                )
+                no_write_access_spaces = {
+                    data_space
+                    for data in input_data
+                    if (data_space := data.space) not in write_access_spaces
+                }
+                if (run_space := run.space) not in write_access_spaces:
+                    no_write_access_spaces.add(run_space)
+                if len(no_write_access_spaces) > 1:
+                    name_msg = ", ".join(
+                        f"'{space.name}'" for space in no_write_access_spaces
+                    )
+                    space_msg = "spaces"
+                else:
+                    name_msg = f"'{no_write_access_spaces.pop().name}'"
+                    space_msg = "space"
+                raise NoWriteAccess(
+                    f"You’re not allowed to write to the {space_msg} {name_msg}.\n"
+                    f"Please contact administrators of the {space_msg} if you need write access."
+                ) from None
+            else:
+                raise e
 
 
 # privates currently dealt with separately

lamindb/models/sqlrecord.py

@@ -918,7 +918,7 @@ class BaseSQLRecord(models.Model, metaclass=Registry):
                 ):
                     raise NoWriteAccess(
                         f"You’re not allowed to write to the space '{self.space.name}'.\n"
-                        "Please contact an administrator of the space if you need write access."
+                        "Please contact administrators of the space if you need write access."
                     ) from None
                 else:
                     raise

{lamindb-1.11.0.dist-info → lamindb-1.11.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: lamindb
-Version: 1.11.0
+Version: 1.11.1
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.10,<3.14
@@ -129,7 +129,7 @@ Conversely, you can query artifacts by the script that created them.
 ln.Artifact.get(transform__key="create-fasta.py")  # query artifact by transform key
 ```
 
-Data lineage is just one type of metadata to help analysis and model training through queries, validation, and annotation. Here is a more [comprehensive example](https://lamin.ai/laminlabs/lamindata/artifact/fgKBV8qdSnbIga0i).
+Data lineage is just one type of metadata to help analysis and model training through queries, validation, and annotation. Here is a more [comprehensive example](https://lamin.ai/laminlabs/lamindata/artifact/9K1dteZ6Qx0EXK8g).
 
 <img src="https://lamin-site-assets.s3.amazonaws.com/.lamindb/6sofuDVvTANB0f480001.png" width="850">
 

{lamindb-1.11.0.dist-info → lamindb-1.11.1.dist-info}/RECORD

@@ -1,4 +1,4 @@
-lamindb/__init__.py,sha256=iD3JsR1_pxWQ_61vYJRqY3W04strzBiwxhGMBksNvys,3241
+lamindb/__init__.py,sha256=jO-XCxfKHm4hUoqFpHDOPFPoKbknvdkm0oImBWGod8A,3241
 lamindb/_finish.py,sha256=4KkFyb9d-GEGjDw_zDrnGt_bq3auQ_OQu0hV-2U73AQ,21355
 lamindb/_tracked.py,sha256=fls9yd7EEGO9Ni51kA_pcBkeLpzm2HZrWtwYGQequNE,4395
 lamindb/_view.py,sha256=GOKTfwnEaly9fdeWo9SlhYRc3UWEyLDmTlIUzjFXMYY,4960
@@ -13,7 +13,7 @@ lamindb/base/uids.py,sha256=cLBi5mIlsf1ltkTb17r1FLzlOjlGmjvsCygoVJHQ-A8,2116
 lamindb/base/users.py,sha256=8MSmAvCKoUF15YsDE6BGLBXsFWpfoEEg8iDTKZ7kD48,848
 lamindb/core/__init__.py,sha256=I9F-GugBMZwFLpUPb1MXyLfccIVAj021Gb_00h_18MY,633
 lamindb/core/_compat.py,sha256=NLnKk1qk4xdgMV-QwFDnBnbio02ujjlF86icvhpdv4c,2029
-lamindb/core/_context.py,sha256=5edP0M5_m8zgNXu7-1XaRLOv20i5LaWHBkEvMHsSiB0,40376
+lamindb/core/_context.py,sha256=wPRNcQ0tPrwvYkYbHxZz0VzdxeBZEuorWOIqpucnbFk,40444
 lamindb/core/_mapped_collection.py,sha256=osquwC6ee0wJ_I6O-8AZwnQUa_r9zqa0MN82Q-nBI3Y,25746
 lamindb/core/_settings.py,sha256=519bOSopRb7_nE874KDJB263v1xFlk4TOqhBNNeO4yw,10992
 lamindb/core/_sync_git.py,sha256=Z7keuyS5X7CAj285sEbZIFExZF9mtjGH8DzKwz3xhHw,5881
@@ -120,7 +120,7 @@ lamindb/models/_from_values.py,sha256=ymR8b0Qa3ZiTFTIuMsFYiBNH16ggDPlYeFjCaFgGET
 lamindb/models/_is_versioned.py,sha256=zCnn5Z5HehBlKX-NXFhqfr3lbVOMRhlvG4ljtLbXl4A,7590
 lamindb/models/_label_manager.py,sha256=12RV8uEpWILGUkNHb7JMccF341ArmrIbHfI9KAo742Q,12118
 lamindb/models/_relations.py,sha256=zHYLujy9vkuB9jVq5844TpzLSP__iYNCQcsl-FzK1Jw,3700
-lamindb/models/artifact.py,sha256=V_uLsa73xNll7iFqUjJl0lAI1s7Q6qycG6ufWP4pvYo,123158
+lamindb/models/artifact.py,sha256=L0DF6HFU1MXHXC3MqE7vWQrRefg4T9A5SFkzA4Sh-J8,125097
 lamindb/models/artifact_set.py,sha256=TfRxmuY9mRzkIeG_vWIDxq4_R_efnXuTbz4xxz7S5Kg,5389
 lamindb/models/can_curate.py,sha256=_w7k8-gPju7owHzX79phtcL7VRy7wAaz-90MzOz8UUQ,29313
 lamindb/models/collection.py,sha256=OqPhDppzCx2y7xEqtmV83el4iNrvOO1KvkE-y8ZEvm4,27372
@@ -133,7 +133,7 @@ lamindb/models/record.py,sha256=2eKEDqpiX5-aN2kUVXLuTVvQUspqQ5h10onbQM6Ta7g,1304
 lamindb/models/run.py,sha256=LVZ2z5QV4aVYYsqGcLmMfqvPpKj4EGGHVts_RR8_c-E,14443
 lamindb/models/save.py,sha256=gBt74RqfwgTa8PnTE153p17PruTAt6WGmGk9ZEBrojI,16719
 lamindb/models/schema.py,sha256=LQuPQhyLitloRGxq6DWZMHcR-xDZY1NctPHjrC6t1iw,49827
-lamindb/models/sqlrecord.py,sha256=3ueIE0_1CY8BUkHNigOhpsPf7WnulAytjEaINnOmS2I,72681
+lamindb/models/sqlrecord.py,sha256=L_-60qCyWuG00IZvGiXA_bcVbYd2GKv-ax2TDQcn8IA,72679
 lamindb/models/storage.py,sha256=n7jth0RQ19K0W8ICbrAO942d5jBm1-h7DsrSjMJgAB0,15551
 lamindb/models/transform.py,sha256=FcIPqmSk1hahg2Cr8q6lm1kKpbdvu2JUceSlPIV9Dww,12780
 lamindb/models/ulabel.py,sha256=UznidEEoiIns_KetWgCbDejXuM5hmzF6F49yqf2kLpQ,9495
@@ -142,7 +142,7 @@ lamindb/setup/_switch.py,sha256=njZJN__JOhVrBFGClQG1wobdhJJp6l_XzPGKtKSCrfU,434
 lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
 lamindb/setup/errors/__init__.py,sha256=bAHTxOUJW1rm4zpF0Pvqkftn8W6iMGnQ-uyNBu13Nfg,171
 lamindb/setup/types/__init__.py,sha256=ATaosOi6q-cDWB52T69_sRmLMqj8cHfc-vljzZsrJNw,169
-lamindb-1.11.0.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-lamindb-1.11.0.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
-lamindb-1.11.0.dist-info/METADATA,sha256=lda7anilPXNn2C-lxekpQAR_AekrD8gU6vYzCxp76TM,4865
-lamindb-1.11.0.dist-info/RECORD,,
+lamindb-1.11.1.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+lamindb-1.11.1.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
+lamindb-1.11.1.dist-info/METADATA,sha256=rrGmUwB5UIBBj-3k8HznNPlWCsAf2mHkQEK5aMSinUY,4865
+lamindb-1.11.1.dist-info/RECORD,,