lamindb 1.10.1__py3-none-any.whl → 1.11a1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (52) hide show
  1. lamindb/__init__.py +89 -49
  2. lamindb/_finish.py +14 -12
  3. lamindb/_tracked.py +2 -4
  4. lamindb/_view.py +1 -1
  5. lamindb/base/__init__.py +2 -1
  6. lamindb/base/dtypes.py +76 -0
  7. lamindb/core/_settings.py +45 -2
  8. lamindb/core/storage/_anndata_accessor.py +118 -26
  9. lamindb/core/storage/_backed_access.py +10 -7
  10. lamindb/core/storage/_spatialdata_accessor.py +15 -4
  11. lamindb/core/storage/_zarr.py +3 -0
  12. lamindb/curators/_legacy.py +16 -3
  13. lamindb/curators/core.py +439 -191
  14. lamindb/examples/cellxgene/__init__.py +8 -3
  15. lamindb/examples/cellxgene/_cellxgene.py +127 -13
  16. lamindb/examples/cellxgene/{cxg_schema_versions.csv → cellxgene_schema_versions.csv} +11 -0
  17. lamindb/examples/croissant/__init__.py +12 -2
  18. lamindb/examples/datasets/__init__.py +2 -2
  19. lamindb/examples/datasets/_core.py +1 -1
  20. lamindb/examples/datasets/_small.py +66 -22
  21. lamindb/examples/datasets/mini_immuno.py +1 -0
  22. lamindb/migrations/0118_alter_recordproject_value_projectrecord.py +99 -0
  23. lamindb/migrations/0119_rename_records_project_linked_in_records.py +26 -0
  24. lamindb/migrations/{0117_squashed.py → 0119_squashed.py} +92 -5
  25. lamindb/migrations/0120_add_record_fk_constraint.py +64 -0
  26. lamindb/migrations/0121_recorduser.py +53 -0
  27. lamindb/models/__init__.py +3 -1
  28. lamindb/models/_describe.py +2 -2
  29. lamindb/models/_feature_manager.py +53 -53
  30. lamindb/models/_from_values.py +2 -2
  31. lamindb/models/_is_versioned.py +4 -4
  32. lamindb/models/_label_manager.py +4 -4
  33. lamindb/models/artifact.py +336 -136
  34. lamindb/models/artifact_set.py +36 -1
  35. lamindb/models/can_curate.py +1 -2
  36. lamindb/models/collection.py +3 -34
  37. lamindb/models/feature.py +111 -7
  38. lamindb/models/has_parents.py +11 -11
  39. lamindb/models/project.py +42 -2
  40. lamindb/models/query_manager.py +16 -7
  41. lamindb/models/query_set.py +59 -34
  42. lamindb/models/record.py +25 -4
  43. lamindb/models/run.py +8 -6
  44. lamindb/models/schema.py +54 -26
  45. lamindb/models/sqlrecord.py +123 -25
  46. lamindb/models/storage.py +59 -14
  47. lamindb/models/transform.py +17 -17
  48. lamindb/models/ulabel.py +6 -1
  49. {lamindb-1.10.1.dist-info → lamindb-1.11a1.dist-info}/METADATA +3 -3
  50. {lamindb-1.10.1.dist-info → lamindb-1.11a1.dist-info}/RECORD +52 -47
  51. {lamindb-1.10.1.dist-info → lamindb-1.11a1.dist-info}/LICENSE +0 -0
  52. {lamindb-1.10.1.dist-info → lamindb-1.11a1.dist-info}/WHEEL +0 -0
{lamindb-1.10.1.dist-info → lamindb-1.11a1.dist-info}/RECORD RENAMED
@@ -1,10 +1,11 @@
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- lamindb/__init__.py,sha256=cWTeR7mqoNI5I8jjkRldYjJOqmaCsy7n8wCvbbWbeNI,2905
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- lamindb/_finish.py,sha256=3HVKRw27rQs_S2ior-JX2IU0vUkeG5a6p8XgEgdT8-U,21219
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- lamindb/_tracked.py,sha256=-wK7BJv30nf4v2_nH5qDCyxHvug7ih6duQNGxDrj3UE,4447
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- lamindb/_view.py,sha256=cod1RnZoLyzMVJcjWjytg78Sf4qsR8IAdqpwzsi8FTw,4950
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+ lamindb/__init__.py,sha256=UgOWRQFmu9TorkWyzPRHcCsWBk0Dx0dzSj4rbr6RMik,3241
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+ lamindb/_finish.py,sha256=t2-ccJ3qDMjUjvJo14l_z7M2BGidHRMdzZAeXFLzuc0,21305
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+ lamindb/_tracked.py,sha256=fls9yd7EEGO9Ni51kA_pcBkeLpzm2HZrWtwYGQequNE,4395
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+ lamindb/_view.py,sha256=GOKTfwnEaly9fdeWo9SlhYRc3UWEyLDmTlIUzjFXMYY,4960
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  lamindb/errors.py,sha256=efqBQ1ca3jMsgCYj2Dssf-SQ9nN70we-eEWnwhQesio,2192
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  lamindb/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- lamindb/base/__init__.py,sha256=6-iUeiBHuxC8vxP3vG880CH1nqP_7z34Appzzr63FBA,295
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+ lamindb/base/__init__.py,sha256=u623ZDoNCwwyLLt_Jhtp3KDeum0LOg6cwAqn5TEgz_E,313
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+ lamindb/base/dtypes.py,sha256=Bfrca8Slb3vIAIMLd-mjG4_9bTHz-LlThSIUHvfNmhA,3189
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  lamindb/base/fields.py,sha256=5l8ke5sAJ5_JvWqjKEMW8oyriGKA7itqGjbmoKKrJrM,8102
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  lamindb/base/ids.py,sha256=X-1N129FOoNw4TPlK_EzgTZOzRidiMyPWszz9r_066g,34
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  lamindb/base/types.py,sha256=NM_J9hQE80fere5dy-se04_Tg2BnPx_0n1ulLHL9iss,3027
@@ -14,40 +15,40 @@ lamindb/core/__init__.py,sha256=I9F-GugBMZwFLpUPb1MXyLfccIVAj021Gb_00h_18MY,633
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  lamindb/core/_compat.py,sha256=NLnKk1qk4xdgMV-QwFDnBnbio02ujjlF86icvhpdv4c,2029
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  lamindb/core/_context.py,sha256=5edP0M5_m8zgNXu7-1XaRLOv20i5LaWHBkEvMHsSiB0,40376
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  lamindb/core/_mapped_collection.py,sha256=osquwC6ee0wJ_I6O-8AZwnQUa_r9zqa0MN82Q-nBI3Y,25746
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- lamindb/core/_settings.py,sha256=Dj44Xh5x3OEpTPvG0twREcIv6X6Er5NzDZO86i8Cq9g,8678
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+ lamindb/core/_settings.py,sha256=519bOSopRb7_nE874KDJB263v1xFlk4TOqhBNNeO4yw,10992
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  lamindb/core/_sync_git.py,sha256=Z7keuyS5X7CAj285sEbZIFExZF9mtjGH8DzKwz3xhHw,5881
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  lamindb/core/_track_environment.py,sha256=fa0-qKEe0BpL79_nsDUDtbg1iA3VpJTh0RCOGdc2XOA,974
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  lamindb/core/exceptions.py,sha256=FMEoSvT3FvtLkxQAt2oDXPeaPem8V5x5UBbTsPFYU5w,53
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  lamindb/core/loaders.py,sha256=QH3r3Q_aPrbkgiWaV30TmxcLCs6zZFQLRW442DsTrNU,5456
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  lamindb/core/types.py,sha256=_u8amXATAZN-nNGNWYGmyqYDcHbT_i0NZeLRhm_-ygI,378
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  lamindb/core/storage/__init__.py,sha256=2gJyn9w6rzv3oPHjY756OfQYrLEXb37YuKMqh6ZjbF8,542
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- lamindb/core/storage/_anndata_accessor.py,sha256=NOAqI-SHS8IwM0MwsZmRUtqG8r4tBTJ9T8888lhvQkw,26611
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- lamindb/core/storage/_backed_access.py,sha256=5y3C_D1g89d831FAXr8-WashmmL3cdNfTR5s61vrMdA,7858
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+ lamindb/core/storage/_anndata_accessor.py,sha256=R6GMSojhI1qj2G1Ei9E1u_jhkHU9dX2kezy7TGojebQ,29778
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+ lamindb/core/storage/_backed_access.py,sha256=f5BOAEFSfiFQcZQiok-vTpSUqF6BbSyF6UKkYLC_chc,8077
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  lamindb/core/storage/_polars_lazy_df.py,sha256=_JhnU8RmoTzU2kp7kyHRSUTAkFhpCJo6NNnHxvBXQv4,2929
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  lamindb/core/storage/_pyarrow_dataset.py,sha256=lRYYt7edUtwauhxd7RwFud6YPDbz2PFvYYgqLhfapfk,1398
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- lamindb/core/storage/_spatialdata_accessor.py,sha256=e5jqRMWAb2zA0srHOTpgmUdFZk54g6gVEbkEBqq6Ndk,1446
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+ lamindb/core/storage/_spatialdata_accessor.py,sha256=mn3iiNIBixGpBJoMmkHCvcoUut7Ttwy9QxGK7P5ywNo,1718
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  lamindb/core/storage/_tiledbsoma.py,sha256=EdzgGVTamB7Ef31doGFWwIOhTd9TNrBfNUplDWSp6wo,11386
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  lamindb/core/storage/_valid_suffixes.py,sha256=vUSeQ4s01rdhD_vSd6wKmFBsgMJAKkBMnL_T9Y1znMg,501
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- lamindb/core/storage/_zarr.py,sha256=PncgrnA3XX2D01AQsTatCImEpbJUriEo00LHmARCkIE,4265
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+ lamindb/core/storage/_zarr.py,sha256=VHT01D_QktmZB4r92XSe8FYveoPkFtn_8XAd3hV1GSA,4433
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  lamindb/core/storage/objects.py,sha256=ISVjBuXPQENZ2XVQDvfX-HZSyDjQi_OGnoJXQmI---Y,3282
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  lamindb/core/storage/paths.py,sha256=C6qAFtWFvFA2RtA9M4KGxT87wmZWqB9b1V5jOCY0ALc,7141
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  lamindb/core/subsettings/__init__.py,sha256=f_vOqZOjVGez8pLmtrUuc_ayDGXl07t_ZY-P2Cedxbo,201
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  lamindb/core/subsettings/_annotation_settings.py,sha256=o-yTYw-NmjFmtehbKU8qnf7tyaeDFkTRGan1pXAIVT0,370
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  lamindb/core/subsettings/_creation_settings.py,sha256=NGHWKqCFSzVNBxAr2VnmdYguiFdW29XUK7T9wRsVshg,906
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  lamindb/curators/__init__.py,sha256=WLnaVxrhQGZxGB3pjg-SM4oUu6DaKA78S_J3BfVKLEg,496
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- lamindb/curators/_legacy.py,sha256=V2zF1J7jN2Ry7ascH06JytrAQzeOiirg7e4a9d0hpvM,54768
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- lamindb/curators/core.py,sha256=OfCSLw6Ngu_HmCSjwRUZrsVwcdq-ge9JL1Wfl0djiyM,68832
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+ lamindb/curators/_legacy.py,sha256=Ay2nd4u2OPL59aYC6rKNE9YpfVTC-MMPvnyzS3fM6xg,55172
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+ lamindb/curators/core.py,sha256=TQYzw4HOsXMcZE0o_RFd_VPvS8GUPFmv8SovyIVUVuE,78056
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  lamindb/examples/__init__.py,sha256=f0pBxijIA26ULUBnsP2sa1e4CLqMTeUUEqNeINJIf9o,179
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- lamindb/examples/cellxgene/__init__.py,sha256=Xzxfi_NQcWdK-RrbNFdlIFQFVPG8Qy18ekYx3sOQZeM,161
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- lamindb/examples/cellxgene/_cellxgene.py,sha256=HP_skQJbNYDEYhiLUpaP9kfmtPivmgTuGyoWNLs07nw,8844
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- lamindb/examples/cellxgene/cxg_schema_versions.csv,sha256=Du_zk2rrMA4AbHwYp6vgLzZH1Krnmml_KVerc2IvvkI,2107
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- lamindb/examples/croissant/__init__.py,sha256=a8LFsAvHzts_C2jlcbuF7kxwGEBWd4VERsluwDFh_iY,1418
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+ lamindb/examples/cellxgene/__init__.py,sha256=0itpr7sthjaZAbL5nGTVTisL5OeP-3WqKFr8zyDWxYM,247
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+ lamindb/examples/cellxgene/_cellxgene.py,sha256=9Q6cB-sowTQgdtegEAHm5jveXrtl7gp0Aops7XTQGbE,12879
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+ lamindb/examples/cellxgene/cellxgene_schema_versions.csv,sha256=IbtgPbrMksqr3q9z0t2-D1ZTPnMO_i29W7crtgpN52w,2534
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+ lamindb/examples/croissant/__init__.py,sha256=dkcT9zkRDBPpds6LnF804o8fcFddjY1KNO_-jLCacag,1548
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- lamindb/examples/datasets/__init__.py,sha256=TI91CjNMh0MqcZVcruO6xLGPYqqQ5o3p_E37huOV3GI,1976
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- lamindb/examples/datasets/_core.py,sha256=o_Kaz-i1W7ldXP2d1arUix_JvxPS9n2bpDAiW0M_yxA,21302
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+ lamindb/examples/datasets/__init__.py,sha256=SKeX5kgjfXtNkUek4GfLYsgn-bGO8UsuF4Qf3R_zN-4,1988
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+ lamindb/examples/datasets/_core.py,sha256=OCz981_GuhQ6qW2ETl_3MOUpOUWWkTUTZ1PhUIKrWUU,21308
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  lamindb/examples/datasets/_fake.py,sha256=BZF9R_1iF0HDnvtZNqL2FtsjSMuqDIfuFxnw_LJYIh4,953
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- lamindb/examples/datasets/_small.py,sha256=60WKs6Oo2NE7HUqe6PLfiPxH_5TYUjr_iZdtFWiOeAA,3460
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- lamindb/examples/datasets/mini_immuno.py,sha256=ZEL9T4zhCKm8ggqU7VVhuihVKPR3MmlkJNOtdygH2v4,6107
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+ lamindb/examples/datasets/_small.py,sha256=wHJb6eXzkQC_Ma8VqX7Orb3nGuAbyNdrr0jxJ93jjxc,4852
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+ lamindb/examples/datasets/mini_immuno.py,sha256=HLeO5Xhp4DGQ4AjVf-VgBWfBJe1EefzbGzABbr5XgUk,6142
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  lamindb/examples/fixtures/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  lamindb/examples/schemas/__init__.py,sha256=NPDp7VjMOHStEIthx3xW9NSHtY7jnnMzrNPcSDgxT3M,241
@@ -105,39 +106,43 @@ lamindb/migrations/0114_alter_run__status_code.py,sha256=KkGecSBJElA3LBnhSK5_rFp
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- lamindb/migrations/0117_squashed.py,sha256=i9rdXIVWkgNaZTaaFs-Ozi_0CC-pKHOdF2ZM37M4fOY,163772
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+ lamindb/migrations/0118_alter_recordproject_value_projectrecord.py,sha256=aNC_o3xfH9wk1BTbOWKbXeV4r_IPXgytYBRTFi_U-MM,3493
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+ lamindb/migrations/0119_rename_records_project_linked_in_records.py,sha256=Feh4rCfoGD4kiGG-sk_IQx7cplDn-yVIlzI5FzE8utI,688
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+ lamindb/migrations/0119_squashed.py,sha256=mY1gpmPqEDEZjjPFgiDJSSGhP9TmNi-T7b5bNmRDztM,166975
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+ lamindb/migrations/0120_add_record_fk_constraint.py,sha256=KvYuA0ET6hoVugu9gwAk29_dSM5HKeOzNvQARjjyK5U,1815
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+ lamindb/migrations/0121_recorduser.py,sha256=Od4CNk2K-IvPdQkIaoOiVA1IW7lCFOwxz9phR0r0oWo,1729
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- lamindb/models/__init__.py,sha256=mtjZH0x31aV463YaUef8ZvdQHlGa6SZr_thsrlbdkCg,2419
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- lamindb/models/_describe.py,sha256=OD-MokYrB6mfzkmFdTkRj0J93LyqxFOgJi_5LvOXr1A,10915
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+ lamindb/models/__init__.py,sha256=Cm1j6A8YwYfPFg3F-si5haanb7belkRqOi8DH3FQZds,2468
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+ lamindb/models/_describe.py,sha256=Co6_whJG7Pm2Sl6YDmGoYL28XZyJ7VqICHTfgGedxvw,10919
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- lamindb/models/_feature_manager.py,sha256=rKScsFCpmZ1JVu4pnq59MhZsz90zlF6oN2UAilwPokU,55038
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- lamindb/models/_from_values.py,sha256=cCGPMDlAbBrdhFW-XrIQVZ10q1LNg4MycYPLOkF0fTc,13366
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- lamindb/models/_is_versioned.py,sha256=Th2_cBf9UWh27E6ANxg6LGmjBOumXFy7AjH0GG4FoXA,7601
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- lamindb/models/_label_manager.py,sha256=O3KaaTEVId5ky3h0aCGg1kDoFFfrovFYlV82YsZZyIs,12127
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+ lamindb/models/_feature_manager.py,sha256=Epw9YDkrrvmMupy9Cronwiz4nsC5cECud5mNfJN_hjw,55111
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+ lamindb/models/_from_values.py,sha256=ymR8b0Qa3ZiTFTIuMsFYiBNH16ggDPlYeFjCaFgGETA,13372
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+ lamindb/models/_is_versioned.py,sha256=zCnn5Z5HehBlKX-NXFhqfr3lbVOMRhlvG4ljtLbXl4A,7590
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+ lamindb/models/_label_manager.py,sha256=12RV8uEpWILGUkNHb7JMccF341ArmrIbHfI9KAo742Q,12118
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- lamindb/models/artifact_set.py,sha256=VOZEGDo3m_9Yg_ftx3I2fwdydjHN61X_qV18N6xG4kM,4117
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- lamindb/models/can_curate.py,sha256=_6ymHhtc9zpU8O6ozqNDqn7jh87C9JisU_dl2gH2Hpo,29329
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- lamindb/models/collection.py,sha256=ZMBaDqQtil9yWqDC_twKbavGkdAulcu9j2WlfHADxn0,28358
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- lamindb/models/feature.py,sha256=eIskKsSBkwW6ftfOZ_ngeqD9Pi6Y70cY_m3WHTCXNU8,38031
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- lamindb/models/has_parents.py,sha256=NRNshrWCX7G3nnM3lnnHQ3Ho216T3EJfgakY6KlTvt8,20301
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- lamindb/models/project.py,sha256=4w2rMZMPrLmvirvJQanhKfqwGqEnpY42iaOWi99YPw0,17345
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- lamindb/models/query_manager.py,sha256=EzbyNA5zWUbLYH5yJ7dIC90j1teVoQHrXpRLjCfBEao,11036
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- lamindb/models/query_set.py,sha256=d27m8UF8QZAzHZBEVE1QdJRtx9wCzYgkDdHGCATBM48,34815
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- lamindb/models/record.py,sha256=WW6iuQT8M4KHcpZoYGSTjND10hvDUIff7DOkyD5d2Fc,12070
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- lamindb/models/run.py,sha256=czMzg1Hp0Ju4eGM0T2vwCSerVpdzd5JyEW2Kj9tjg2o,15580
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+ lamindb/models/artifact.py,sha256=T_euX9aqHAWDGpIjzfUp635a2awPYzYbGBEVnyMmZlg,124675
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+ lamindb/models/artifact_set.py,sha256=tiQNlamIMCGzpU_esX0J8lbFnq6U-mpZ0UPFrUMP7Sc,5174
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+ lamindb/models/can_curate.py,sha256=_w7k8-gPju7owHzX79phtcL7VRy7wAaz-90MzOz8UUQ,29313
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+ lamindb/models/collection.py,sha256=OqPhDppzCx2y7xEqtmV83el4iNrvOO1KvkE-y8ZEvm4,27372
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+ lamindb/models/feature.py,sha256=6kI3UZMp3gBi75NhXBp_jn-1tRlc42YdJOEJFNgjtNo,41814
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+ lamindb/models/has_parents.py,sha256=Ok-Tsh4-oBDjkyevyMSuOCb0mzDiswiO_0ufTqWz8o4,20341
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+ lamindb/models/project.py,sha256=AhaY24iE8ilpS5dRFYzY6xQNVlqPHWMk72ib2OI_N8U,18732
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+ lamindb/models/query_manager.py,sha256=zjO31kbj1t08WTxeZB9-BPjooz6axh06EFu90dfvpSA,11358
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+ lamindb/models/query_set.py,sha256=rxK0DR86PM9cFjat0DC-_9jAZrUUQZEejwHMEP2whYo,35831
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129
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135
140
  lamindb/setup/__init__.py,sha256=QZ-JF8IzO_ckDOU223lsJrdO5ay7cDFgvCbkLeAuxYA,467
136
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  lamindb/setup/_switch.py,sha256=njZJN__JOhVrBFGClQG1wobdhJJp6l_XzPGKtKSCrfU,434
137
142
  lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
138
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  lamindb/setup/errors/__init__.py,sha256=bAHTxOUJW1rm4zpF0Pvqkftn8W6iMGnQ-uyNBu13Nfg,171
139
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  lamindb/setup/types/__init__.py,sha256=ATaosOi6q-cDWB52T69_sRmLMqj8cHfc-vljzZsrJNw,169
140
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141
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145
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