lamindb 1.0.5__py3-none-any.whl → 1.1.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (80) hide show
  1. lamindb/__init__.py +17 -6
  2. lamindb/_artifact.py +202 -87
  3. lamindb/_can_curate.py +27 -8
  4. lamindb/_collection.py +86 -52
  5. lamindb/_feature.py +177 -41
  6. lamindb/_finish.py +21 -7
  7. lamindb/_from_values.py +83 -98
  8. lamindb/_parents.py +4 -4
  9. lamindb/_query_set.py +78 -18
  10. lamindb/_record.py +170 -53
  11. lamindb/_run.py +4 -4
  12. lamindb/_save.py +42 -11
  13. lamindb/_schema.py +135 -38
  14. lamindb/_storage.py +1 -1
  15. lamindb/_tracked.py +129 -0
  16. lamindb/_transform.py +21 -8
  17. lamindb/_ulabel.py +5 -14
  18. lamindb/base/users.py +1 -4
  19. lamindb/base/validation.py +2 -6
  20. lamindb/core/__init__.py +13 -14
  21. lamindb/core/_context.py +14 -9
  22. lamindb/core/_data.py +29 -25
  23. lamindb/core/_describe.py +1 -1
  24. lamindb/core/_django.py +1 -1
  25. lamindb/core/_feature_manager.py +53 -43
  26. lamindb/core/_label_manager.py +4 -4
  27. lamindb/core/_mapped_collection.py +24 -9
  28. lamindb/core/_track_environment.py +2 -1
  29. lamindb/core/datasets/__init__.py +6 -1
  30. lamindb/core/datasets/_core.py +12 -11
  31. lamindb/core/datasets/_small.py +67 -21
  32. lamindb/core/exceptions.py +1 -90
  33. lamindb/core/loaders.py +21 -15
  34. lamindb/core/relations.py +6 -4
  35. lamindb/core/storage/_anndata_accessor.py +49 -3
  36. lamindb/core/storage/_backed_access.py +12 -7
  37. lamindb/core/storage/_pyarrow_dataset.py +40 -15
  38. lamindb/core/storage/_tiledbsoma.py +56 -12
  39. lamindb/core/storage/paths.py +30 -24
  40. lamindb/core/subsettings/_creation_settings.py +4 -16
  41. lamindb/curators/__init__.py +2193 -846
  42. lamindb/curators/_cellxgene_schemas/__init__.py +26 -0
  43. lamindb/curators/_cellxgene_schemas/schema_versions.yml +104 -0
  44. lamindb/errors.py +96 -0
  45. lamindb/integrations/_vitessce.py +3 -3
  46. lamindb/migrations/0069_squashed.py +76 -75
  47. lamindb/migrations/0075_lamindbv1_part5.py +4 -5
  48. lamindb/migrations/0082_alter_feature_dtype.py +21 -0
  49. lamindb/migrations/0083_alter_feature_is_type_alter_flextable_is_type_and_more.py +94 -0
  50. lamindb/migrations/0084_alter_schemafeature_feature_and_more.py +35 -0
  51. lamindb/migrations/0085_alter_feature_is_type_alter_flextable_is_type_and_more.py +63 -0
  52. lamindb/migrations/0086_various.py +95 -0
  53. lamindb/migrations/0087_rename__schemas_m2m_artifact_feature_sets_and_more.py +41 -0
  54. lamindb/migrations/0088_schema_components.py +273 -0
  55. lamindb/migrations/0088_squashed.py +4372 -0
  56. lamindb/models.py +475 -168
  57. {lamindb-1.0.5.dist-info → lamindb-1.1.1.dist-info}/METADATA +9 -7
  58. lamindb-1.1.1.dist-info/RECORD +95 -0
  59. lamindb/curators/_spatial.py +0 -528
  60. lamindb/migrations/0052_squashed.py +0 -1261
  61. lamindb/migrations/0053_alter_featureset_hash_alter_paramvalue_created_by_and_more.py +0 -57
  62. lamindb/migrations/0054_alter_feature_previous_runs_and_more.py +0 -35
  63. lamindb/migrations/0055_artifact_type_artifactparamvalue_and_more.py +0 -61
  64. lamindb/migrations/0056_rename_ulabel_ref_is_name_artifactulabel_label_ref_is_name_and_more.py +0 -22
  65. lamindb/migrations/0057_link_models_latest_report_and_others.py +0 -356
  66. lamindb/migrations/0058_artifact__actions_collection__actions.py +0 -22
  67. lamindb/migrations/0059_alter_artifact__accessor_alter_artifact__hash_type_and_more.py +0 -31
  68. lamindb/migrations/0060_alter_artifact__actions.py +0 -22
  69. lamindb/migrations/0061_alter_collection_meta_artifact_alter_run_environment_and_more.py +0 -45
  70. lamindb/migrations/0062_add_is_latest_field.py +0 -32
  71. lamindb/migrations/0063_populate_latest_field.py +0 -45
  72. lamindb/migrations/0064_alter_artifact_version_alter_collection_version_and_more.py +0 -33
  73. lamindb/migrations/0065_remove_collection_feature_sets_and_more.py +0 -22
  74. lamindb/migrations/0066_alter_artifact__feature_values_and_more.py +0 -352
  75. lamindb/migrations/0067_alter_featurevalue_unique_together_and_more.py +0 -20
  76. lamindb/migrations/0068_alter_artifactulabel_unique_together_and_more.py +0 -20
  77. lamindb/migrations/0069_alter_artifact__accessor_alter_artifact__hash_type_and_more.py +0 -1294
  78. lamindb-1.0.5.dist-info/RECORD +0 -102
  79. {lamindb-1.0.5.dist-info → lamindb-1.1.1.dist-info}/LICENSE +0 -0
  80. {lamindb-1.0.5.dist-info → lamindb-1.1.1.dist-info}/WHEEL +0 -0
lamindb-1.0.5.dist-info/RECORD DELETED
@@ -1,102 +0,0 @@
1
- lamindb/__init__.py,sha256=G-HK8IuAG4oCMtmrpeHdnj3HBNt-6w8m6QiPLbexTK8,2255
2
- lamindb/_artifact.py,sha256=IEbB4rr3BUoadNRGIgVL93w_uMVUblnvPWZ5wqpWocY,47220
3
- lamindb/_can_curate.py,sha256=pIu9Ylgq5biUd_67rRbAHg9tkXSQrxMRM8TnVboL9YA,20341
4
- lamindb/_collection.py,sha256=j2yTfR9v-NGUI85JfQk7vOQNExkWE5H_ulsSlBh1AOI,14456
5
- lamindb/_feature.py,sha256=qpUZfmdxUpQFLq5GciTn6KgALL19tCs0raHhzJgm7Lo,6311
6
- lamindb/_finish.py,sha256=R-wRJi881WJhrC6uu4t7sls9oFvKJSTXtwVEM38LSnQ,18671
7
- lamindb/_from_values.py,sha256=uO3IfYzAI8VDDTqlbLzsZtawSYFS-Qzd_ZWwKGhH90o,14231
8
- lamindb/_is_versioned.py,sha256=6_LBAKD_fng6BReqitJUIxTUaQok3AeIpNnE_D8kHnQ,1293
9
- lamindb/_parents.py,sha256=PA--_ZH3PNqIVW0PpuYk9d4DAVlHUBPN-dN0rFUKUN0,17238
10
- lamindb/_query_manager.py,sha256=znUAYeNuUk13YVXq51CllpGr33F15_PW_dQYcok0gO8,3636
11
- lamindb/_query_set.py,sha256=Cbh6QaHR2_REx970b4rM95L7TjfVJdPRbUOHKz0qJ7Q,23528
12
- lamindb/_record.py,sha256=7JpAOwR2aRVXI9RzrAMovjYDzjI0thQfVwS2tmM4_r4,34003
13
- lamindb/_run.py,sha256=Nezhtu4yYBZbFOjAIwFhLEaUNIhNnTt0Hsx8XLG9XsY,1998
14
- lamindb/_save.py,sha256=7wI2eINwtxjw67Rk3ZB_LCPbF-ovDZRei6KyMeJO8DQ,11604
15
- lamindb/_schema.py,sha256=_bBirtghkQGnOt07IYETlfWWI_gF_ZlosX6xeEWGzCg,8152
16
- lamindb/_storage.py,sha256=nxRPHd5W7LicIJf3LF3H1lpFglYoXaRAkwg1F_uovrc,415
17
- lamindb/_transform.py,sha256=LYFf8gScJrYLMZJECLYZ5nrW2vLPObdzRP47md-Tq-s,5731
18
- lamindb/_ulabel.py,sha256=YTiUCYrcEqyUKD8nZO4iOqiyYnUP5bW_r7yry4KSeWA,2068
19
- lamindb/_utils.py,sha256=LGdiW4k3GClLz65vKAVRkL6Tw-Gkx9DWAdez1jyA5bE,428
20
- lamindb/_view.py,sha256=c4eN5hcBlg3TVnljKefbyWAq0eBncjMp2xQcb5OaGWg,4982
21
- lamindb/models.py,sha256=6WF2uFkqrcHiCMVNWlgcDGDNlRQ-WjXs2W-1Ryty3k4,147747
22
- lamindb/base/__init__.py,sha256=J0UpYObi9hJBFyBpAXp4wB3DaJx48R2SaUeB4wjiFvc,267
23
- lamindb/base/fields.py,sha256=RdwYHQmB7B-jopD_K2QNL5vjhOelu7DWGgqQItXr3pg,8024
24
- lamindb/base/ids.py,sha256=WzHWiHZtlRUKqxz_p-76ks_JSW669ztvriE7Z3A0yHg,1736
25
- lamindb/base/types.py,sha256=JfZk0xmhLsWusU0s4SNjhRnQ52mn-cSiG5Gf4SsACBs,1227
26
- lamindb/base/users.py,sha256=g4ZLQb6eey66FO9eEumbfDpJi_FZZsiLVe2Frz9JuLI,978
27
- lamindb/base/validation.py,sha256=Azz9y2-x0cPum4yULXMG3Yzra03mcVYzcKTiI23HgxE,2287
28
- lamindb/core/__init__.py,sha256=4AGZqt5g8k3jFX53IXdezQR4Gf7JmMBLZRyTJJzS4sI,1628
29
- lamindb/core/_context.py,sha256=gacr4xG1J14kAVkPmbDIXIVq0qpCPssatB2sXIZPuck,28856
30
- lamindb/core/_data.py,sha256=xg_St591OPCzLhaZAlGxVd8QkDxZsxDc_yEwY8Kop8w,19017
31
- lamindb/core/_describe.py,sha256=3Z1xi9eKIBkYuPW9ctdWvFaGZym8mI9FcwyZF3a6YVo,4885
32
- lamindb/core/_django.py,sha256=vPY4wJ4bf3a1uz5bhukCCF_mngR_9w2Ot3nvWZpa204,7629
33
- lamindb/core/_feature_manager.py,sha256=YU4gqKvgJEMh0NOvGqZrrB8nSgdjBGnw1bhSVb1uVGE,47996
34
- lamindb/core/_label_manager.py,sha256=OKMXpEM5FVhzGm-PU3-jQ1ZcQI_gCTgP5X1Vvhs9XF4,11876
35
- lamindb/core/_mapped_collection.py,sha256=btDGl8V3Vi_MDy-9vIi40p8ejL2Kb0dO4rhdCiNWpxc,24870
36
- lamindb/core/_settings.py,sha256=haLHE1dhog_Sz6gnecTW8E548njWH5nVt8mTFPEs6ZM,5733
37
- lamindb/core/_sync_git.py,sha256=xu1o6zlBD_pTRpBPVXiHKOI2tmtGaUfXvuuII2AAfM4,5875
38
- lamindb/core/_track_environment.py,sha256=nVEO98P7ZrUWyixMI3AdoD7vcUszIVciZwgPOsQUsNU,814
39
- lamindb/core/exceptions.py,sha256=QnvqzMPIHrjaVnyqCBXtut3Jy5LYtV1GBNjGO7MISHY,1691
40
- lamindb/core/fields.py,sha256=zM6G7CiE6mU_5heLWwIhE3d5LqAjPCEwgs0eechFm0c,175
41
- lamindb/core/loaders.py,sha256=d3s2eF2rf66wW350HZQYNZW4S96k3RaQYgvks01Kt0Q,4767
42
- lamindb/core/relations.py,sha256=NLr2s4xreh4_93UyoV57QNyTBi-swokQyRcotZzTqAI,3428
43
- lamindb/core/types.py,sha256=DS4uXaCswAW9tqz4MZ_sYc1_QZ6il--Z4x8HeHNQgRw,162
44
- lamindb/core/versioning.py,sha256=tUZthgDwbz7UBx1wx_MsdsXXsltE1E9clapmRkmvKlU,4953
45
- lamindb/core/datasets/__init__.py,sha256=XE_JAiEMMaBkP3ChLQD36Lzpze0Z08_sHgjXF1Joyuk,1675
46
- lamindb/core/datasets/_core.py,sha256=-f5RDsMaRdTLlc3rmYrkviO58HTRfo3GZqdPABiIr1g,19462
47
- lamindb/core/datasets/_fake.py,sha256=BZF9R_1iF0HDnvtZNqL2FtsjSMuqDIfuFxnw_LJYIh4,953
48
- lamindb/core/datasets/_small.py,sha256=2ttgHe_L-NkFc9sKFbLRkKfpG09YI_PpH9jdXMFYuYg,3221
49
- lamindb/core/storage/__init__.py,sha256=JOIMu_7unbyhndtH1j0Q-9AvY8knSuc1IJO9sQnyBAQ,498
50
- lamindb/core/storage/_anndata_accessor.py,sha256=lVCy7as7hBj3i4RVapeaBWpZqlaBjxZ0uD240_cQz1c,24377
51
- lamindb/core/storage/_anndata_sizes.py,sha256=aXO3OB--tF5MChenSsigW6Q-RuE8YJJOUTVukkLrv9A,1029
52
- lamindb/core/storage/_backed_access.py,sha256=HvIOaiJr4eEdXGJyMqaeDqmCJGdfwHvqJeWZMnGk4Bg,3519
53
- lamindb/core/storage/_pyarrow_dataset.py,sha256=wuLsEvdblqMdUdDfMtis8AWrE3igzvFWTSTbxuD1Oc8,926
54
- lamindb/core/storage/_tiledbsoma.py,sha256=g3qNISsNfrxypU36vqFB-QBYuCpsmBLMKWYVlXloWiY,8438
55
- lamindb/core/storage/_valid_suffixes.py,sha256=vUSeQ4s01rdhD_vSd6wKmFBsgMJAKkBMnL_T9Y1znMg,501
56
- lamindb/core/storage/_zarr.py,sha256=sVd9jVt2q91maeL6GAqMhT6sqtD04vQRfxY3mvIUQlc,3854
57
- lamindb/core/storage/objects.py,sha256=5vM2T_upuzrXt2b7fQeQ2FUO710-FRbubxTzKzV2ECU,1812
58
- lamindb/core/storage/paths.py,sha256=ahYJz6PmySEw544soQS-6ug8npDnwDm18lgvCFn7Q3w,6794
59
- lamindb/core/subsettings/__init__.py,sha256=j6G9WAJLK-x9FzPSFw-HJUmOseZKGTbK-oLTKI_X_zs,126
60
- lamindb/core/subsettings/_creation_settings.py,sha256=54mfMH_osC753hpxcl7Dq1rwBD2LHnWveXtQpkLBITE,1194
61
- lamindb/curators/__init__.py,sha256=XGHnTEFB-Q4XphR0AWLXhITqhAZqkqEzuJJq1Ypb-zU,92357
62
- lamindb/curators/_spatial.py,sha256=JgveK3aC1kFEplumEwU4Yyj-2tgHGfSAO52lHniJq5s,21212
63
- lamindb/integrations/__init__.py,sha256=RWGMYYIzr8zvmNPyVB4m-p4gMDhxdRbjES2Ed23OItw,215
64
- lamindb/integrations/_vitessce.py,sha256=nbfOsEO-W4f0BVnpFBDaA45577cfdvQehVx1hAUP544,3978
65
- lamindb/migrations/0052_squashed.py,sha256=sEx8AsVAmiucNxMqeoa8MCPc2MtNMZoDYK_x8D_ocIs,45970
66
- lamindb/migrations/0053_alter_featureset_hash_alter_paramvalue_created_by_and_more.py,sha256=xW9m7uvxVJsKVLTLYfU6O3Q8aPkgAwJSknY4-ybXbnk,1734
67
- lamindb/migrations/0054_alter_feature_previous_runs_and_more.py,sha256=4b9J9Xlvb8I0QQu_2OycXrGSsUN-lBdBVoVDDReAEO8,1054
68
- lamindb/migrations/0055_artifact_type_artifactparamvalue_and_more.py,sha256=lz9J79A_3d3NplCUp246_kPywGPpNkEmmqf2QgBcZvQ,1904
69
- lamindb/migrations/0056_rename_ulabel_ref_is_name_artifactulabel_label_ref_is_name_and_more.py,sha256=-fExdgPPz34SshruSmrdWbmtbG3bEsjKXkvBomLx0Ug,585
70
- lamindb/migrations/0057_link_models_latest_report_and_others.py,sha256=gSKHICQfmU45qepVEW_xmkddSDFFd_EtXKBdYFtQUlU,11371
71
- lamindb/migrations/0058_artifact__actions_collection__actions.py,sha256=tEZTu5nYtAj-KEUaHGyZqHAH8oRDPNQKd7Sdrufc-WM,624
72
- lamindb/migrations/0059_alter_artifact__accessor_alter_artifact__hash_type_and_more.py,sha256=ywAlvtu1n7R2igTbL5yZgeE4ogShsYSIwv3tWImTFS0,860
73
- lamindb/migrations/0060_alter_artifact__actions.py,sha256=DAXOpBObjADuIGu_nC8X3cokEJ_itDW3_pFC9FbRE-Y,539
74
- lamindb/migrations/0061_alter_collection_meta_artifact_alter_run_environment_and_more.py,sha256=cz4brVH1tnZjCYb8dEStujjnSn86nyb5Q_7nCowYCqU,1327
75
- lamindb/migrations/0062_add_is_latest_field.py,sha256=B32_262qaH3bBkQ1qWrIgjrCG0-xpLLsvwzw0Rbq8Z4,923
76
- lamindb/migrations/0063_populate_latest_field.py,sha256=VM3xX6NC_lWF6vmEsaIkqVx48u3tBnt0DHJsutBjuCg,1134
77
- lamindb/migrations/0064_alter_artifact_version_alter_collection_version_and_more.py,sha256=FqNtpM-H4hzJ3_HhKGad3HTGJepxyBvqjDxUcxJylOE,914
78
- lamindb/migrations/0065_remove_collection_feature_sets_and_more.py,sha256=5Gckmxyo8eVM3LZG88z16oM-ISw5zPTZG-uc7dubX2Y,492
79
- lamindb/migrations/0066_alter_artifact__feature_values_and_more.py,sha256=HLTG25Hr6DFyddv0x3CRTZA9Yz9g0BWt6gQcgCcJjLs,11896
80
- lamindb/migrations/0067_alter_featurevalue_unique_together_and_more.py,sha256=AsCwHPQ4qIlWyQoFSsbNcQyzEOcngbVnJHHzdzRS9XI,481
81
- lamindb/migrations/0068_alter_artifactulabel_unique_together_and_more.py,sha256=TfvHyJN70tb64PUNHPeRLgwYGV7KCTxHiNPoUJd7v0s,546
82
- lamindb/migrations/0069_alter_artifact__accessor_alter_artifact__hash_type_and_more.py,sha256=ZloarUL3htjr6TTbE0U4_Hi87CxldLKA5t4RSb5qQec,45388
83
- lamindb/migrations/0069_squashed.py,sha256=KE2U6AX4wOh3ONMAN9INzZOvVA6b06pNsqMzDGYQgXU,62470
84
- lamindb/migrations/0070_lamindbv1_migrate_data.py,sha256=tyq_xi6U8TXi9C2Raf6v_UTtfyfqQOUIFJzYj4oCgAE,2429
85
- lamindb/migrations/0071_lamindbv1_migrate_schema.py,sha256=r3PPpq4RK7rhrLWjhVACd5i-tSUTBF0X6Luc5v-g0Lg,25125
86
- lamindb/migrations/0072_remove_user__branch_code_remove_user_aux_and_more.py,sha256=Nek9Mkuop3LgjAuW3moY-dyPXroCFq8UyvCAAWEquCM,4443
87
- lamindb/migrations/0073_merge_ourprojects.py,sha256=f0uZ63X0iEylKDlYWD6CAYMge5RcwPSH6yGsoA1KgPQ,35032
88
- lamindb/migrations/0074_lamindbv1_part4.py,sha256=NqYjEAmm2bNuK42ufLaJZDBjCjAJNv-N9pEXK7iCfyA,11557
89
- lamindb/migrations/0075_lamindbv1_part5.py,sha256=XmwkuR4lFuTgHFAVRtvw91oI6Iq4JZTI57CplWcIl0o,8973
90
- lamindb/migrations/0076_lamindbv1_part6.py,sha256=G_Wgog-OgquE0-h_CykjiDWUyPdYlCwA8gXjeuBY2OM,21349
91
- lamindb/migrations/0077_lamindbv1_part6b.py,sha256=v7k8OZX9o5ppSJU_yhHlIXGTobTm30bo1dAIi8tUkEI,8211
92
- lamindb/migrations/0078_lamindbv1_part6c.py,sha256=RWRXBwyyQ_rFTN5kwstBziV6tqHJcGYI2vsFmuYCCz0,17084
93
- lamindb/migrations/0079_alter_rundata_value_json_and_more.py,sha256=yQmbs8yWrFLOVQJqAfzLNMZOqTSnXyG-mQgpO7ls1u8,995
94
- lamindb/migrations/0080_polish_lamindbv1.py,sha256=VfCwJtHlBsMPIyFQ2oh24oWkiRXjDvXRpKe5fBZ63aM,17660
95
- lamindb/migrations/0081_revert_textfield_collection.py,sha256=uHuJ0W4Ips7BrnQnQBGPMn2eFQz29a1QAdHzN7XlDxo,490
96
- lamindb/migrations/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
97
- lamindb/setup/__init__.py,sha256=OwZpZzPDv5lPPGXZP7-zK6UdO4FHvvuBh439yZvIp3A,410
98
- lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
99
- lamindb-1.0.5.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
100
- lamindb-1.0.5.dist-info/WHEEL,sha256=CpUCUxeHQbRN5UGRQHYRJorO5Af-Qy_fHMctcQ8DSGI,82
101
- lamindb-1.0.5.dist-info/METADATA,sha256=keGjzSSAZGJK8iXJ778p0xgzolFAorxvMiaJt06a0Gs,2651
102
- lamindb-1.0.5.dist-info/RECORD,,