lamindb 0.76.2__py3-none-any.whl → 0.76.4__py3-none-any.whl

lamindb/core/exceptions.py

@@ -20,7 +20,7 @@ class TrackNotCalled(SystemExit):
     pass
 
 
-class NotebookNotSaved(SystemExit):
+class NotebookFileNotSavedToDisk(SystemExit):
     pass
 
 

lamindb/core/storage/__init__.py

@@ -19,7 +19,7 @@ Array accessors.
 from lamindb_setup.core.upath import LocalPathClasses, UPath, infer_filesystem
 
 from ._backed_access import AnnDataAccessor, BackedAccessor
-from ._tiledbsoma import register_for_tiledbsoma_store, write_tiledbsoma_store
+from ._tiledbsoma import save_tiledbsoma_experiment
 from ._valid_suffixes import VALID_SUFFIXES
 from .objects import infer_suffix, write_to_disk
 from .paths import delete_storage, load_to_memory

lamindb/core/storage/_anndata_accessor.py

@@ -10,7 +10,7 @@ import numpy as np
 import pandas as pd
 from anndata import AnnData
 from anndata import __version__ as anndata_version
-from anndata._core.index import Index, _normalize_indices
+from anndata._core.index import _normalize_indices
 from anndata._core.views import _resolve_idx
 from anndata._io.h5ad import read_dataframe_legacy as read_dataframe_legacy_h5
 from anndata._io.specs.registry import get_spec, read_elem, read_elem_partial
@@ -29,6 +29,11 @@ if TYPE_CHECKING:
 
 anndata_version_parse = version.parse(anndata_version)
 
+if anndata_version_parse < version.parse("0.9.0"):
+    from anndata._core.index import Index
+else:
+    from anndata.compat import Index
+
 if anndata_version_parse < version.parse("0.10.0"):
     if anndata_version_parse < version.parse("0.9.1"):
         logger.warning(

lamindb/core/storage/_tiledbsoma.py

@@ -2,18 +2,19 @@ from __future__ import annotations
 
 from typing import TYPE_CHECKING, Literal
 
-from anndata import AnnData
+from anndata import AnnData, read_h5ad
 from lamin_utils import logger
+from lamindb_setup import settings as setup_settings
 from lamindb_setup.core._settings_storage import get_storage_region
-from lamindb_setup.core.upath import create_path
-from lnschema_core import Artifact, Run, Storage
-from upath import UPath
+from lamindb_setup.core.upath import LocalPathClasses, create_path
+from lnschema_core import Artifact, Run
 
 if TYPE_CHECKING:
     from lamindb_setup.core.types import UPathStr
     from tiledbsoma import Collection as SOMACollection
     from tiledbsoma import Experiment as SOMAExperiment
     from tiledbsoma.io import ExperimentAmbientLabelMapping
+    from upath import UPath
 
 
 def _read_adata_h5ad_zarr(objpath: UPath):
@@ -22,7 +23,12 @@ def _read_adata_h5ad_zarr(objpath: UPath):
     if objpath.is_dir():
         adata = read_adata_zarr(objpath)
     else:
-        adata = read_adata_h5ad(objpath)
+        # read only local in backed for now
+        # in principle possible to read remote in backed also
+        if isinstance(objpath, LocalPathClasses):
+            adata = read_h5ad(objpath.as_posix(), backed="r")
+        else:
+            adata = read_adata_h5ad(objpath)
     return adata
 
 
@@ -67,21 +73,41 @@ def _open_tiledbsoma(
     return SOMAType.open(storepath_str, mode=mode, context=ctx)
 
 
-def register_for_tiledbsoma_store(
-    store: UPathStr | Artifact | None,
+def save_tiledbsoma_experiment(
+    # Artifact args
     adatas: list[AnnData | UPathStr],
-    measurement_name: str,
-    obs_field_name: str,
-    var_field_name: str,
-    append_obsm_varm: bool = False,
+    key: str | None = None,
+    description: str | None = None,
     run: Run | None = None,
-) -> tuple[ExperimentAmbientLabelMapping, list[AnnData]]:
-    """Register `AnnData` objects to append to `tiledbsoma.Experiment`.
+    revises: Artifact | None = None,
+    # tiledbsoma.io.from_anndata args
+    measurement_name: str = "RNA",
+    obs_id_name: str = "obs_id",
+    var_id_name: str = "var_id",
+    append_obsm_varm: bool = False,
+    # additional keyword args for tiledbsoma.io.from_anndata
+    **kwargs,
+) -> Artifact:
+    """Write `AnnData` to `tiledbsoma.Experiment`.
+
+    Reads `AnnData` objects, writes them to `tiledbsoma.Experiment`, creates & saves an {class}`~lamindb.Artifact`.
 
-    Pass the returned registration mapping and `AnnData` objects to `write_tiledbsoma_store`.
+    Populates a column `lamin_run_uid` column in `obs` with the current `run.uid`.
 
-    See `tiledbsoma.io.from_h5ad
-    <https://tiledbsoma.readthedocs.io/en/latest/_autosummary/tiledbsoma.io.from_h5ad.html>`__.
+    Is based on `tiledbsoma.io.from_anndata
+    <https://tiledbsoma.readthedocs.io/en/latest/_autosummary/tiledbsoma.io.from_anndata.html>`__.
+
+    Args:
+        adatas: `AnnData` objects to write, in-memory or on-disk.
+        key: An optional key to reference the artifact.
+        description: A description.
+        run: The run that creates the artifact.
+        revises: `lamindb.Artifact` with `tiledbsoma.Experiment` to append to.
+        measurement_name: The name of the measurement to store data in `tiledbsoma.Experiment`.
+        obs_id_name: Which `AnnData` `obs` column to use for append mode.
+        var_id_name: Which `AnnData` `var` column to use for append mode.
+        append_obsm_varm: Whether to append `obsm` and `varm` in append mode .
+        **kwargs: Keyword arguments passed to `tiledbsoma.io.from_anndata`.
     """
     try:
         import tiledbsoma as soma
@@ -89,27 +115,36 @@ def register_for_tiledbsoma_store(
     except ImportError as e:
         raise ImportError("Please install tiledbsoma: pip install tiledbsoma") from e
 
-    if isinstance(store, Artifact):
-        storepath = store.path
+    from lamindb.core._data import get_run
+    from lamindb.core.storage.paths import auto_storage_key_from_artifact_uid
+    from lamindb.core.versioning import create_uid
+
+    run = get_run(run)
+
+    appending = revises is not None
+    if appending:
+        storepath = revises.path
     else:
-        storepath = None if store is None else create_path(store)
+        uid, _ = create_uid(n_full_id=20)
+        storage_key = auto_storage_key_from_artifact_uid(
+            uid, ".tiledbsoma", is_dir=True
+        )
+        storepath = setup_settings.storage.root / storage_key
+
+    if storepath.protocol == "s3":
+        ctx = soma.SOMATileDBContext(tiledb_config=_tiledb_config_s3(storepath))
+    else:
+        ctx = None
+
+    storepath = storepath.as_posix()
 
     add_run_uid = True
-    ctx = None
-    if storepath is not None:
-        if storepath.protocol == "s3":
-            ctx = soma.SOMATileDBContext(tiledb_config=_tiledb_config_s3(storepath))
-        if storepath.exists():
-            with soma.Experiment.open(
-                storepath.as_posix(), mode="r", context=ctx
-            ) as store:
-                add_run_uid = "lamin_run_uid" in store["obs"].schema.names
-        storepath = storepath.as_posix()
-
-    if add_run_uid:
-        from lamindb.core._data import get_run
-
-        run = get_run(run)
+    if appending:
+        with soma.Experiment.open(storepath, mode="r", context=ctx) as store:
+            add_run_uid = "lamin_run_uid" in store["obs"].schema.names
+
+    if add_run_uid and run is None:
+        raise ValueError("Pass `run`")
 
     adata_objects = []
     for adata in adatas:
@@ -117,10 +152,9 @@ def register_for_tiledbsoma_store(
             if add_run_uid:
                 if adata.is_view:
                     raise ValueError(
-                        "Can not register an `AnnData` view, please do `adata.copy()` before passing."
+                        "Can not write an `AnnData` view, please do `adata.copy()` before passing."
                     )
                 else:
-                    logger.warning("Mutating in-memory AnnData.")
                     adata.obs["lamin_run_uid"] = run.uid
         else:
             adata = _read_adata_h5ad_zarr(create_path(adata))
@@ -128,102 +162,35 @@ def register_for_tiledbsoma_store(
                 adata.obs["lamin_run_uid"] = run.uid
         adata_objects.append(adata)
 
-    registration_mapping = soma_io.register_anndatas(
-        experiment_uri=storepath,
-        adatas=adata_objects,
-        measurement_name=measurement_name,
-        obs_field_name=obs_field_name,
-        var_field_name=var_field_name,
-        append_obsm_varm=append_obsm_varm,
-        context=ctx,
-    )
-
-    return registration_mapping, adata_objects
-
-
-def write_tiledbsoma_store(
-    store: Artifact | UPathStr,
-    adata: AnnData | UPathStr,
-    run: Run | None = None,
-    artifact_kwargs: dict | None = None,
-    **kwargs,
-) -> Artifact:
-    """Write `AnnData` to `tiledbsoma.Experiment`.
-
-    Reads `AnnData`, writes it to `tiledbsoma.Experiment` and creates `lamindb.Artifact`.
-
-    See `tiledbsoma.io.from_h5ad
-    <https://tiledbsoma.readthedocs.io/en/latest/_autosummary/tiledbsoma.io.from_h5ad.html>`__.
-    """
-    try:
-        import tiledbsoma as soma
-        import tiledbsoma.io as soma_io
-    except ImportError as e:
-        raise ImportError("Please install tiledbsoma: pip install tiledbsoma") from e
-
-    from lamindb.core._data import get_run
-
-    if artifact_kwargs is None:
-        artifact_kwargs = {}
-
-    appending: bool = kwargs.get("registration_mapping", None) is not None
-    store_is_artifact: bool = isinstance(store, Artifact)
-    if store_is_artifact:
-        if not appending:
-            raise ValueError(
-                "Trying to append to an existing store without `registration_mapping`."
-            )
-        storepath = store.path
-    else:
-        storepath = create_path(store)
-    add_run_uid: bool = not appending
-
-    if not isinstance(adata, AnnData):
-        # create_path is used
-        # in case adata is somewhere in our managed s3 bucket or just in s3
-        adata = _read_adata_h5ad_zarr(create_path(adata))
-    elif add_run_uid and adata.is_view:
-        raise ValueError(
-            "Can not write from an `AnnData` view, please do `adata.copy()` before passing."
+    registration_mapping = kwargs.get("registration_mapping", None)
+    if registration_mapping is None and (appending or len(adata_objects) > 1):
+        registration_mapping = soma_io.register_anndatas(
+            experiment_uri=storepath if appending else None,
+            adatas=adata_objects,
+            measurement_name=measurement_name,
+            obs_field_name=obs_id_name,
+            var_field_name=var_id_name,
+            append_obsm_varm=append_obsm_varm,
+            context=ctx,
         )
 
-    run = get_run(run)
-
-    if add_run_uid:
-        adata.obs["lamin_run_uid"] = run.uid
-
-    if storepath.protocol == "s3":
-        ctx = soma.SOMATileDBContext(tiledb_config=_tiledb_config_s3(storepath))
-    else:
-        ctx = None
-
-    soma_io.from_anndata(storepath.as_posix(), adata, context=ctx, **kwargs)
-
-    if add_run_uid:
-        del adata.obs["lamin_run_uid"]
+    for adata_obj in adata_objects:
+        soma_io.from_anndata(
+            storepath,
+            adata_obj,
+            measurement_name,
+            context=ctx,
+            obs_id_name=obs_id_name,
+            var_id_name=var_id_name,
+            registration_mapping=registration_mapping,
+            **kwargs,
+        )
 
-    revises = None
-    if appending:
-        if store_is_artifact:
-            revises = store
-        else:
-            from lamindb._artifact import (
-                check_path_in_existing_storage,
-                get_relative_path_to_directory,
-            )
-
-            storage = check_path_in_existing_storage(storepath)
-            if isinstance(storage, Storage):
-                search_by_key = get_relative_path_to_directory(
-                    path=storepath, directory=UPath(storage.root)
-                ).as_posix()
-                revises = Artifact.filter(
-                    key=search_by_key, is_latest=True, _key_is_virtual=False
-                ).one_or_none()
-                if revises is not None:
-                    logger.info(f"Assuming it is a new version of {revises}.")
-
-    if revises is None:
-        return Artifact(storepath, run=run, **artifact_kwargs)
-    else:
-        return Artifact(storepath, run=run, revises=revises, **artifact_kwargs)
+    return Artifact(
+        storepath,
+        key=key,
+        description=description,
+        run=run,
+        revises=revises,
+        _is_internal_call=True,
+    ).save()

lamindb/core/versioning.py

@@ -99,6 +99,10 @@ def create_uid(
     n_full_id: int = 20,
     revises: IsVersioned | None = None,
 ) -> tuple[str, IsVersioned | None]:
+    """This also updates revises in case it's not the latest version.
+
+    This is why it returns revises.
+    """
     if revises is not None:
         if not revises.is_latest:
             # need one more request

lamindb/integrations/__init__.py

@@ -4,6 +4,9 @@
    :toctree: .
 
    save_vitessce_config
+   save_tiledbsoma_experiment
 """
 
+from lamindb.core.storage import save_tiledbsoma_experiment
+
 from ._vitessce import save_vitessce_config

lamindb/integrations/_vitessce.py

@@ -56,22 +56,12 @@ def save_vitessce_config(
                 raise ValueError("Each file must have a 'url' key.")
             s3_path = file["url"]
             s3_path_last_element = s3_path.split("/")[-1]
-            # note 1: the following parses the stem uid of the artifact from the S3 path
-            # there might be a better way of doing this in case the vitessce config
-            # gets updated in the future; but given these paths are set in stone
-            # this should be more robust than it looks
-            #
-            # note 2: what's not great is the fact that people might use composite suffixes we don't recognize
-            # I don't know what to do about it other than documenting it clearly
-            # https://github.com/laminlabs/lamindb/blob/main/lamindb/core/storage/_valid_suffixes.py
-            # https://docs.lamin.ai/lamindb.core.storage.valid_suffixes
-            #
             # now start with attempting to strip the composite suffix candidates
             for suffix in valid_composite_zarr_suffixes:
                 s3_path_last_element = s3_path_last_element.replace(suffix, "")
             # in case there was no hit, strip plain ".zarr"
             artifact_stem_uid = s3_path_last_element.replace(".zarr", "")
-            # if there is still a "." in string, we
+            # if there is still a "." in string, raise an error
             if "." in artifact_stem_uid:
                 raise ValueError(
                     f"Suffix should be '.zarr' or one of {valid_composite_zarr_suffixes}. Inspect your path {s3_path}"

{lamindb-0.76.2.dist-info → lamindb-0.76.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lamindb
-Version: 0.76.2
+Version: 0.76.4
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.8
@@ -9,22 +9,22 @@ Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
-Requires-Dist: lnschema_core==0.73.2
-Requires-Dist: lamindb_setup==0.76.6
+Requires-Dist: lnschema_core==0.73.5
+Requires-Dist: lamindb_setup==0.76.8
 Requires-Dist: lamin_utils==0.13.4
-Requires-Dist: lamin_cli==0.16.2
+Requires-Dist: lamin_cli==0.17.0
 Requires-Dist: rapidfuzz
 Requires-Dist: pyarrow
 Requires-Dist: typing_extensions!=4.6.0
 Requires-Dist: python-dateutil
-Requires-Dist: anndata>=0.8.0,<=0.10.8
+Requires-Dist: anndata>=0.8.0,<=0.10.9
 Requires-Dist: scipy<1.13.0rc1
 Requires-Dist: fsspec
 Requires-Dist: pandas
 Requires-Dist: graphviz
 Requires-Dist: psycopg2-binary
 Requires-Dist: lamindb_setup[aws] ; extra == "aws"
-Requires-Dist: bionty==0.48.3 ; extra == "bionty"
+Requires-Dist: bionty==0.49.1 ; extra == "bionty"
 Requires-Dist: pre-commit ; extra == "dev"
 Requires-Dist: nox ; extra == "dev"
 Requires-Dist: laminci>=0.3 ; extra == "dev"
@@ -38,7 +38,7 @@ Requires-Dist: django-schema-graph ; extra == "erdiagram"
 Requires-Dist: readfcs>=1.1.8 ; extra == "fcs"
 Requires-Dist: lamindb_setup[gcp] ; extra == "gcp"
 Requires-Dist: nbproject==0.10.4 ; extra == "jupyter"
-Requires-Dist: nbstripout==0.6.1 ; extra == "jupyter"
+Requires-Dist: jupytext ; extra == "jupyter"
 Requires-Dist: nbconvert ; extra == "jupyter"
 Requires-Dist: zarr>=2.16.0 ; extra == "zarr"
 Project-URL: Home, https://github.com/laminlabs/lamindb

{lamindb-0.76.2.dist-info → lamindb-0.76.4.dist-info}/RECORD

@@ -1,47 +1,47 @@
-lamindb/__init__.py,sha256=OCLxYHwhRyaf6Zx-AKHTSEFWM-J342YRxDP2hhCIu6c,2309
-lamindb/_artifact.py,sha256=RygNHePDo895KG61FctFRdHO4jVa9cmj-yBBsyRE50A,43840
-lamindb/_can_validate.py,sha256=ne8-9sAG9vXnMXZqso6mYMt-xDg16h-gq6yHJXKFpuI,17690
+lamindb/__init__.py,sha256=faIPIM0ynMz0AU9pziDSQJT-rQhUXqpJ3PWRlmijqbs,2319
+lamindb/_artifact.py,sha256=QjCge5kaAcfhGv84s299OT99LmHTSYDxgzw5kN-x3-8,44416
+lamindb/_can_validate.py,sha256=9di9FLmC2m3dpT42sceF34UEFzQITi2e_hjVMa8DIc4,18261
 lamindb/_collection.py,sha256=F_VgpLBprrzUQ-tPngWvO9vFd7jX66MVwIi031JOris,14871
-lamindb/_curate.py,sha256=EAikoFg2rL8kRsWEIXH33P1VplSGAACMuFHanicguWw,55964
+lamindb/_curate.py,sha256=gCbDiqhsJzVZZ6BuEoFXUpsNOffpUNDlrX1dJiOqJJo,58753
 lamindb/_feature.py,sha256=nZhtrH0ssoNls-hV-dkwfK9sKypg2El59R9qfarxfUE,5340
 lamindb/_feature_set.py,sha256=DmAy96V_RyV0yiyvWOCHgustXPsCaMwn4TrWwh2qDd8,8104
-lamindb/_filter.py,sha256=Fs7_x3tA_KVz0lYt0bJkWfjnEKAnkVN20CfKhp9aKWg,1403
-lamindb/_finish.py,sha256=wCjPmTBmL_z2WcZq9v6TZroZ_J_Te9KC5GzFuYdrIRc,9413
+lamindb/_filter.py,sha256=9QHa9J-_6QeYPQATZpTun2VGiFofwzB0Km-KnKajHcM,663
+lamindb/_finish.py,sha256=NEZmTW7sWzwi-QYTwVgoOeeD-pZxWBrZOITK_YoJreU,9434
 lamindb/_from_values.py,sha256=8kYpR8Q85EOaTcsPGjVHeZh29fGVgum5OEQf4Hsz_80,13533
 lamindb/_is_versioned.py,sha256=5lAnhTboltFkZCKVRV1uxkm0OCjJz_HKi3yQq_vEuMs,1306
 lamindb/_parents.py,sha256=eMavdd6IO6STOVJSlR2TzdRtx6sKYDKsMOtlR3DZlgQ,15599
 lamindb/_query_manager.py,sha256=Ipe85HL31DDwMbC8CN_1Svbwk48a_DUh_INGQdZL08I,4222
-lamindb/_query_set.py,sha256=mwNfGWcZbI5a1VfuiQzkweU4VQchE8Va8HiCIa0GNu4,11604
-lamindb/_record.py,sha256=MDLvcsZ23lZkThnrYQtj_uW-1BnxCPpyJ5mKl9KPs4A,21199
+lamindb/_query_set.py,sha256=BiGvEiaBSd9aV28EAy83Q8h6RLsYMDjfxLOljAcyMaM,12692
+lamindb/_record.py,sha256=53_0oU6v45V5gIDJgkAUSX7iIV5Si_4cuOWUHJa8JVo,21241
 lamindb/_run.py,sha256=5M_r1zGDv9HlqbqRKTWCYCOtENovJ-8mQ4kY7XqcLaU,1888
 lamindb/_save.py,sha256=Fu7Z84btKOXfTfpunKLni21s5ER2zIllqg5e3nPq-0A,10910
 lamindb/_storage.py,sha256=GBVChv-DHVMNEBJL5l_JT6B4RDhZ6NnwgzmUICphYKk,413
-lamindb/_transform.py,sha256=Ck674iuKIp9HDpHuyFFM2xKJcFAUvQDRTnEdnx00Rq0,4114
+lamindb/_transform.py,sha256=Rgj8uq6t4NpyP7DtQ-0IRJs7vSEKHyWftY5dvwKNFgs,4063
 lamindb/_ulabel.py,sha256=XDSdZBXX_ki5s1vOths3MjF2x5DPggBR_PV_KF4SGyg,1611
 lamindb/_utils.py,sha256=LGdiW4k3GClLz65vKAVRkL6Tw-Gkx9DWAdez1jyA5bE,428
 lamindb/_view.py,sha256=4Ln2ItTb3857PAI-70O8eJYqoTJ_NNFc7E_wds6OGns,2412
-lamindb/core/__init__.py,sha256=QePKN3dkGuNEfIc2CKwBt3Kcl39bbghX6XwXKpK3BA0,1491
-lamindb/core/_context.py,sha256=O4ovdIfvIC9E4oaqpSjBqwHOKThmP8_aod0MiOWaEwI,19517
+lamindb/core/__init__.py,sha256=hxPWM_Jnrllx0G_6itEGU2meXwptkkgiL9zsBvlhHM4,1495
+lamindb/core/_context.py,sha256=U-vmMH4s0ZfvS6KBRj5mOsOFuvcioJ7FgUdn0OOkLvA,19972
 lamindb/core/_data.py,sha256=eocOXsZGu62LPtz6yIlvHhPSJTf3yF2ITZTffyflWYI,16269
 lamindb/core/_feature_manager.py,sha256=94tX6gq_Rx7fkDARQBxB2z92qUDpHocFSAdKv5izMT4,32490
-lamindb/core/_label_manager.py,sha256=jSLvxAuTuOYosSh_QJhIz3bqnbmWKP43y5abVMb-hOQ,9240
-lamindb/core/_mapped_collection.py,sha256=ST-cTfokIGkRadjSHEyvIK2san8cGr7WZpgbgs5neLI,22025
+lamindb/core/_label_manager.py,sha256=zCE-PS1Y5ALpzoSOx1P6ZTFVPgFNRAmmyTQF0e8QBXA,9131
+lamindb/core/_mapped_collection.py,sha256=1XzratL2IvRleqioNhWo26Lsuqkev8-HEImmHQxw9Kw,23266
 lamindb/core/_settings.py,sha256=GGEB8BU5GinIfD4ktr1Smp6GPHGaInu46MhP4EecZDY,5950
 lamindb/core/_sync_git.py,sha256=qc0yfPyKeG4uuNT_3qsv-mkIMqhLFqfXNeNVO49vV00,4547
 lamindb/core/_track_environment.py,sha256=STzEVUzOeUEWdX7WDJUkKH4u08k7eupRX6AXQwoVt14,828
-lamindb/core/exceptions.py,sha256=qNFYN5Jc7Y6kw4re-jsW0AEIprsV2HB1wTcJiO-u-ks,1278
+lamindb/core/exceptions.py,sha256=TKyt1JOUwWIHbkCQjir_LQadf8960eQ95RWhSpz5_Bk,1288
 lamindb/core/fields.py,sha256=47Jmh3efUr5ZscgimR_yckY-I3cNf8ScLutbwKCK3j4,162
 lamindb/core/schema.py,sha256=KiYQn_8fokSMztTNDe6qUocZzKXWxU32H-YChNJv51A,1877
 lamindb/core/types.py,sha256=uVBqSVLoQaTkqP9nqsJhwU6yYnx8H5e6-ZxrB6vpOOw,265
-lamindb/core/versioning.py,sha256=__SOHhk5OjMJgAUjixzp0GFcQrpjm8sBUXC9Fouk2AE,5162
+lamindb/core/versioning.py,sha256=GYhgSA6IOlWMMNfctZu7U_jIvmQP2gdvsZxn4bTanOc,5277
 lamindb/core/datasets/__init__.py,sha256=zRP98oqUAaXhqWyKMiH0s_ImVIuNeziQQ2kQ_t0f-DI,1353
 lamindb/core/datasets/_core.py,sha256=CgVF_pXuBXLElzubDMsl1DbpYOnXCY0HleITVvBKih4,19873
 lamindb/core/datasets/_fake.py,sha256=BZF9R_1iF0HDnvtZNqL2FtsjSMuqDIfuFxnw_LJYIh4,953
-lamindb/core/storage/__init__.py,sha256=9B3JqHydQnclP4NUY2kEc99K1cJBQZA4jyy3EmDxsYk,541
-lamindb/core/storage/_anndata_accessor.py,sha256=jmEZeeZlt8-qBXRkU0tTA-t6dVEb_dH86wc1ok0jSRY,24030
+lamindb/core/storage/__init__.py,sha256=x-Bpxv1rx6uGog-chI0fdpt0UhkXQkwoQqye0TNk0WQ,514
+lamindb/core/storage/_anndata_accessor.py,sha256=F3ze8ICG7K4BKueg-766olnoEA8Eh8gVrvDSSE2FX-M,24160
 lamindb/core/storage/_anndata_sizes.py,sha256=aXO3OB--tF5MChenSsigW6Q-RuE8YJJOUTVukkLrv9A,1029
 lamindb/core/storage/_backed_access.py,sha256=YcWCeT2eligJGsBdjJS_-4el_eC9J088jxUWG9lsleM,3231
-lamindb/core/storage/_tiledbsoma.py,sha256=GNPG8pDYmZLFBSujsQ8VqlfWaFmDO58kgBXw6JESQJs,7812
+lamindb/core/storage/_tiledbsoma.py,sha256=OVDjvu4lRovRtWcn9Tu3N5tA-zbF8snsjkR4DOXOTTc,7001
 lamindb/core/storage/_valid_suffixes.py,sha256=vUSeQ4s01rdhD_vSd6wKmFBsgMJAKkBMnL_T9Y1znMg,501
 lamindb/core/storage/_zarr.py,sha256=5ceEz6YIvgvUnVVNWhK5Z4W0WfrvyvY82Yna5jSX1_E,3661
 lamindb/core/storage/objects.py,sha256=OzvBCS-Urz5mr-O95qYt6RGBDDX5HmjfRRKWPPDn1ZE,1797
@@ -49,11 +49,11 @@ lamindb/core/storage/paths.py,sha256=woOrjtBhNnzm8DjF262ipwyZaQ_A-7MT2ZPoiefAfYk
 lamindb/core/subsettings/__init__.py,sha256=KFHPzIE7f7Bj4RgMjGQF4CjTdHVG_VNFBrCndo49ixo,198
 lamindb/core/subsettings/_creation_settings.py,sha256=54mfMH_osC753hpxcl7Dq1rwBD2LHnWveXtQpkLBITE,1194
 lamindb/core/subsettings/_transform_settings.py,sha256=4YbCuZtJo6zdytl6UQR4GvdDkTtT6SRBqVzofGzNOt8,583
-lamindb/integrations/__init__.py,sha256=MoLRD_qqX5WHFUAqHL6zoY_cDkWH0zimaGT_1CyXKnk,124
-lamindb/integrations/_vitessce.py,sha256=aDCyZTddpMfUzjEo0DXQ3XlD--ebSqnsGiMxJBunX90,5141
+lamindb/integrations/__init__.py,sha256=RWGMYYIzr8zvmNPyVB4m-p4gMDhxdRbjES2Ed23OItw,215
+lamindb/integrations/_vitessce.py,sha256=4DM_EXe-o7BVmX7QGTiwREWMHDzAtOqpqDvL70xQKfE,4451
 lamindb/setup/__init__.py,sha256=OwZpZzPDv5lPPGXZP7-zK6UdO4FHvvuBh439yZvIp3A,410
 lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
-lamindb-0.76.2.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-lamindb-0.76.2.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
-lamindb-0.76.2.dist-info/METADATA,sha256=99nkmjVubVfQahE9S4aO1e8Ot6G4iFaPZltNBE-oFPo,2381
-lamindb-0.76.2.dist-info/RECORD,,
+lamindb-0.76.4.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+lamindb-0.76.4.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
+lamindb-0.76.4.dist-info/METADATA,sha256=X_O43XFARj0Vg5pAgez5uCI4IQG5jUp6cqd_pMAc0YQ,2372
+lamindb-0.76.4.dist-info/RECORD,,