lamindb 0.75.0__py3-none-any.whl → 0.76.0__py3-none-any.whl

lamindb/core/datasets/_core.py

@@ -1,6 +1,7 @@
 from __future__ import annotations
 
 from pathlib import Path
+from typing import TYPE_CHECKING
 from urllib.request import urlretrieve
 
 import anndata as ad
@@ -11,6 +12,9 @@ from upath import UPath
 
 from lamindb.core._settings import settings
 
+if TYPE_CHECKING:
+    from mudata import MuData
+
 
 def file_fcs() -> Path:
     """Example FCS artifact."""
@@ -116,7 +120,7 @@ def file_mini_csv(in_storage_root=False) -> Path:
     return filepath
 
 
-def file_tiff_suo22():  # pragma: no cover
+def file_tiff_suo22() -> Path:  # pragma: no cover
     """Image file from Suo22.
 
     Pair with anndata_suo22_Visium10X
@@ -126,7 +130,7 @@ def file_tiff_suo22():  # pragma: no cover
         "F121_LP1_4LIV.tiff",
     )
     Path("suo22/").mkdir(exist_ok=True)
-    filepath = Path(filepath).rename("suo22/F121_LP1_4LIV.tiff")
+    filepath = Path(filepath).rename("suo22/F121_LP1_4LIV.tiff")  # type: ignore
     return Path(filepath)
 
 
@@ -282,17 +286,16 @@ def anndata_human_immune_cells(
 ) -> ad.AnnData:  # pragma: no cover
     """Cross-tissue immune cell analysis reveals tissue-specific features in humans.
 
-    From: https://cellxgene.cziscience.com/collections/62ef75e4-cbea-454e-a0ce-998ec40223d3  # noqa
+    From: https://cellxgene.cziscience.com/collections/62ef75e4-cbea-454e-a0ce-998ec40223d3
     Collection: Global
 
     To reproduce the subsample::
-
-        adata = sc.read('Global.h5ad')
-        adata.obs = adata.obs[['donor_id', 'tissue', 'cell_type', 'assay', 'tissue_ontology_term_id', 'cell_type_ontology_term_id', 'assay_ontology_term_id']].copy()
-        sc.pp.subsample(adata, fraction=0.005)
-        del adata.uns["development_cache_ontology_term_id_colors"]
-        del adata.uns["sex_ontology_term_id_colors"]
-        adata.write('human_immune.h5ad')
+        >>> adata = sc.read('Global.h5ad')
+        >>> adata.obs = adata.obs[['donor_id', 'tissue', 'cell_type', 'assay', 'tissue_ontology_term_id', 'cell_type_ontology_term_id', 'assay_ontology_term_id']].copy()
+        >>> sc.pp.subsample(adata, fraction=0.005)
+        >>> del adata.uns["development_cache_ontology_term_id_colors"]
+        >>> del adata.uns["sex_ontology_term_id_colors"]
+        >>> adata.write('human_immune.h5ad')
     """
     filepath, _ = urlretrieve("https://lamindb-test.s3.amazonaws.com/human_immune.h5ad")
     adata = ad.read_h5ad(filepath)
@@ -369,29 +372,34 @@ def anndata_suo22_Visium10X():  # pragma: no cover
     return ad.read_h5ad(filepath)
 
 
-def mudata_papalexi21_subset():  # pragma: no cover
+def mudata_papalexi21_subset() -> MuData:  # pragma: no cover
     """A subsetted mudata from papalexi21.
 
     To reproduce the subsetting:
-    >>> !wget https://figshare.com/ndownloader/files/36509460
-    >>> import mudata as md
-    >>> import scanpy as sc
-    >>> mdata = md.read_h5mu("36509460")
-    >>> mdata = sc.pp.subsample(mdata, n_obs=200, copy=True)[0]
-    >>> mdata[:, -300:].copy().write("papalexi21_subset_200x300_lamindb_demo_2023-07-25.h5mu")  # noqa
+        >>> !wget https://figshare.com/ndownloader/files/36509460
+        >>> import mudata as md
+        >>> import scanpy as sc
+        >>> mdata = md.read_h5mu("36509460")
+        >>> mdata = sc.pp.subsample(mdata, n_obs=200, copy=True)[0]
+        >>> mdata[:, -300:].copy().write("papalexi21_subset_200x300_lamindb_demo_2023-07-25.h5mu")
     """
     import mudata as md
 
+    md.set_options(pull_on_update=False)
+
     filepath, _ = urlretrieve(
         "https://lamindb-test.s3.amazonaws.com/papalexi21_subset_200x300_lamindb_demo_2023-07-25.h5mu",
         "papalexi21_subset.h5mu",
     )
 
     mdata = md.read_h5mu(filepath)
+
+    mdata.pull_obs()
+
+    # The MuData object is malformed with duplicated information
+    # Drop all columns for the modalities and add them again correspondingly
     for mod in ["rna", "adt", "hto", "gdo"]:
-        mdata[mod].obs.drop(
-            mdata[mod].obs.columns, axis=1, inplace=True
-        )  # Drop all columns
+        mdata[mod].obs.drop(mdata[mod].obs.columns, axis=1, inplace=True)
     for col in mdata.obs.columns:
         for mod in ["rna", "adt", "hto", "gdo"]:
             if col.endswith(f"_{mod.upper()}"):
@@ -420,12 +428,10 @@ def mudata_papalexi21_subset():  # pragma: no cover
         "HTO_classification",
     ]:
         del mdata.obs[col]
-        mdata.update()
 
-    mdata["rna"].obs["percent.mito"] = mdata.obs.pop("percent.mito")
+    mdata.push_obs(["percent.mito"], mods=["rna"], drop=True)
     mdata["hto"].obs["technique"] = "cell hashing"
     mdata["hto"].obs["technique"] = mdata["hto"].obs["technique"].astype("category")
-    mdata.update()
 
     return mdata
 

lamindb/core/schema.py

@@ -4,16 +4,16 @@ from django.db.models import ManyToManyField
 from lnschema_core.models import Feature, FeatureSet, LinkORM, Record
 
 
-def dict_schema_name_to_model_name(orm: type[Record]) -> dict[str, Record]:
+def dict_schema_name_to_model_name(registry: type[Record]) -> dict[str, Record]:
     d: dict = {
         i.related_model.__get_name_with_schema__(): i.related_model
-        for i in orm._meta.related_objects
+        for i in registry._meta.related_objects
         if i.related_name is not None
     }
     d.update(
         {
             i.related_model.__get_name_with_schema__(): i.related_model
-            for i in orm._meta.many_to_many
+            for i in registry._meta.many_to_many
             if i.name is not None
         }
     )
@@ -21,12 +21,12 @@ def dict_schema_name_to_model_name(orm: type[Record]) -> dict[str, Record]:
 
 
 def dict_related_model_to_related_name(
-    orm: type[Record], links: bool = False
+    registry: type[Record], links: bool = False
 ) -> dict[str, str]:
     def include(model: Record):
         return not links != issubclass(model, LinkORM)
 
-    related_objects = orm._meta.related_objects + orm._meta.many_to_many
+    related_objects = registry._meta.related_objects + registry._meta.many_to_many
     d: dict = {
         record.related_model.__get_name_with_schema__(): (
             record.related_name

lamindb/core/storage/__init__.py

@@ -1,4 +1,13 @@
-"""Storage tools.
+"""Storage API.
+
+Valid suffixes.
+
+.. autosummary::
+   :toctree: .
+
+   VALID_SUFFIXES
+
+Array accessors.
 
 .. autosummary::
    :toctree: .
@@ -11,6 +20,6 @@ from lamindb_setup.core.upath import LocalPathClasses, UPath, infer_filesystem
 
 from ._anndata_sizes import size_adata
 from ._backed_access import AnnDataAccessor, BackedAccessor
-from ._valid_suffixes import VALID_COMPOSITE_SUFFIXES, VALID_SUFFIXES
+from ._valid_suffixes import VALID_SUFFIXES
 from .objects import infer_suffix, write_to_disk
 from .paths import delete_storage, load_to_memory

lamindb/core/storage/_valid_suffixes.py

@@ -1,5 +1,19 @@
-from lamindb_setup.core.upath import VALID_COMPOSITE_SUFFIXES, VALID_SUFFIXES
+from lamindb_setup.core.upath import VALID_COMPOSITE_SUFFIXES, VALID_SIMPLE_SUFFIXES
 
 # add new composite suffixes like so
-VALID_COMPOSITE_SUFFIXES.update({".vitessce.json"})
+VALID_COMPOSITE_SUFFIXES.update(
+    {
+        ".vitessce.json",
+        ".ome.zarr",
+    }
+)
 # can do the same for simple valid suffixes
+
+
+class VALID_SUFFIXES:
+    """Valid suffixes."""
+
+    SIMPLE: set[str] = VALID_SIMPLE_SUFFIXES
+    """Simple suffixes."""
+    COMPOSITE: set[str] = VALID_COMPOSITE_SUFFIXES
+    """Composite suffixes."""

lamindb/core/versioning.py

@@ -72,7 +72,6 @@ def set_version(version: str | None = None, previous_version: str | None = None)
     return version
 
 
-# uses `initial_version_id` to extract a stem_id that's part of id
 def init_uid(
     *,
     version: str | None = None,

lamindb/integrations/_vitessce.py

@@ -15,61 +15,98 @@ if TYPE_CHECKING:
     from vitessce import VitessceConfig
 
 
-# tested & context in https://github.com/laminlabs/lamin-spatial
-def save_vitessce_config(vitessce_config: VitessceConfig, description: str) -> Artifact:
+# "unit test": https://github.com/laminlabs/lamindb/blob/main/docs/storage/vitessce.ipynb
+# integration test & context: https://github.com/laminlabs/lamin-spatial/blob/main/docs/vitessce.ipynb
+def save_vitessce_config(
+    vitessce_config: VitessceConfig, description: str | None = None
+) -> Artifact:
     """Validates and saves a ``VitessceConfig`` object.
 
-    Example: :doc:`docs:vitessce`.
+    Guide: :doc:`docs:vitessce`.
 
     Args:
-        vitessce_config (``VitessceConfig``): A VitessceConfig object.
-        description: A description for the artifact.
+        vitessce_config (``VitessceConfig``): A `VitessceConfig` object.
+        description: A description for the `VitessceConfig` artifact.
 
+    .. versionchanged:: 0.75.1
+        Now displays the "Vitessce button" on the hub next to the dataset. It additionally keeps displaying it next to the configuration file.
     .. versionchanged:: 0.70.2
-        This function no longer saves the dataset. It only saves the VitessceConfig object.
+        No longer saves the dataset. It only saves the `VitessceConfig` object.
     """
+    # can only import here because vitessce is not a dependency
+    from vitessce import VitessceConfig
+
+    from lamindb.core.storage import VALID_SUFFIXES
+
+    assert isinstance(vitessce_config, VitessceConfig)  # noqa: S101
     vc_dict = vitessce_config.to_dict()
+    valid_composite_zarr_suffixes = [
+        suffix for suffix in VALID_SUFFIXES.COMPOSITE if suffix.endswith(".zarr")
+    ]
     # validate
-    datasets = vc_dict["datasets"]
-    input_artifacts = []
-    for dataset in datasets:
-        if "files" not in dataset:
-            raise ValueError("Each dataset must have a 'files' key.")
-        for file in dataset["files"]:
+    dataset_artifacts = []
+    assert vc_dict["datasets"]  # noqa: S101
+    for vitessce_dataset in vc_dict["datasets"]:
+        # didn't find good ways to violate the below, hence using plain asserts
+        # without user feedback
+        assert "files" in vitessce_dataset  # noqa: S101
+        assert vitessce_dataset["files"]  # noqa: S101
+        for file in vitessce_dataset["files"]:
             if "url" not in file:
                 raise ValueError("Each file must have a 'url' key.")
-            filename = file["url"].split("/")[-1]
-            if not filename.endswith((".anndata.zarr", ".zarr", ".ome.zarr")):
-                logger.warning(
-                    "filename should end with '.anndata.zarr', '.zarr', or '.ome.zarr'."
+            s3_path = file["url"]
+            s3_path_last_element = s3_path.split("/")[-1]
+            # note 1: the following parses the stem uid of the artifact from the S3 path
+            # there might be a better way of doing this in case the vitessce config
+            # gets updated in the future; but given these paths are set in stone
+            # this should be more robust than it looks
+            #
+            # note 2: what's not great is the fact that people might use composite suffixes we don't recognize
+            # I don't know what to do about it other than documenting it clearly
+            # https://github.com/laminlabs/lamindb/blob/main/lamindb/core/storage/_valid_suffixes.py
+            # https://docs.lamin.ai/lamindb.core.storage.valid_suffixes
+            #
+            # now start with attempting to strip the composite suffix candidates
+            for suffix in valid_composite_zarr_suffixes:
+                s3_path_last_element = s3_path_last_element.replace(suffix, "")
+            # in case there was no hit, strip plain ".zarr"
+            artifact_stem_uid = s3_path_last_element.replace(".zarr", "")
+            # if there is still a "." in string, we
+            if "." in artifact_stem_uid:
+                raise ValueError(
+                    f"Suffix should be '.zarr' or one of {valid_composite_zarr_suffixes}. Inspect your path {s3_path}"
                 )
-            filestem = (
-                filename.replace(".anndata.zarr", "")
-                .replace(".spatialdata.zarr", "")
-                .replace(".ome.zarr", "")
-            )
-            artifact = Artifact.filter(uid__startswith=filestem).one_or_none()
+            artifact = Artifact.filter(uid__startswith=artifact_stem_uid).one_or_none()
             if artifact is None:
-                logger.warning(
-                    f"could not find dataset '{filestem}' in lamindb: {dataset}"
+                raise ValueError(
+                    f"Could not find dataset with stem uid '{artifact_stem_uid}' in lamindb: {vitessce_dataset}. Did you follow https://docs.lamin.ai/vitessce? It appears the AWS S3 path doesn't encode a lamindb uid."
                 )
             else:
-                input_artifacts.append(artifact)
+                dataset_artifacts.append(artifact)
     # link inputs
     with logger.mute():
-        transform = Transform(name="save_vitessce_config", type="function", version="1")
+        transform = Transform(name="save_vitessce_config", type="function", version="2")
         transform.save()
     run = Run(transform=transform)
     run.save()
-    run.input_artifacts.set(input_artifacts)
+    if len(dataset_artifacts) > 1:
+        # if we have more datasets, we should create a collection
+        # and attach an action to the collection
+        raise NotImplementedError
+    run.input_artifacts.set(dataset_artifacts)
     # create a JSON export
     config_file_local_path = (
         ln_setup.settings.storage.cache_dir / "config.vitessce.json"
     )
     with open(config_file_local_path, "w") as file:
         json.dump(vc_dict, file)
-    artifact = Artifact(config_file_local_path, description=description, run=run)
-    artifact.save()
+    vitessce_config_artifact = Artifact(
+        config_file_local_path, description=description, run=run
+    ).save()
+    # we have one and only one dataset artifact, hence the following line is OK
+    dataset_artifacts[0]._actions.add(vitessce_config_artifact)
     slug = ln_setup.settings.instance.slug
-    logger.important(f"go to: https://lamin.ai/{slug}/artifact/{artifact.uid}")
-    return artifact
+    logger.important(
+        f"go to: https://lamin.ai/{slug}/artifact/{vitessce_config_artifact.uid}"
+    )
+    return vitessce_config_artifact

{lamindb-0.75.0.dist-info → lamindb-0.76.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lamindb
-Version: 0.75.0
+Version: 0.76.0
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.8
@@ -9,10 +9,10 @@ Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
-Requires-Dist: lnschema_core==0.72.1
-Requires-Dist: lamindb_setup==0.76.2
+Requires-Dist: lnschema_core==0.73.0
+Requires-Dist: lamindb_setup==0.76.4
 Requires-Dist: lamin_utils==0.13.2
-Requires-Dist: lamin_cli==0.16.0
+Requires-Dist: lamin_cli==0.16.1
 Requires-Dist: rapidfuzz
 Requires-Dist: pyarrow
 Requires-Dist: typing_extensions!=4.6.0
@@ -24,7 +24,7 @@ Requires-Dist: pandas
 Requires-Dist: graphviz
 Requires-Dist: psycopg2-binary
 Requires-Dist: lamindb_setup[aws] ; extra == "aws"
-Requires-Dist: bionty==0.47.1 ; extra == "bionty"
+Requires-Dist: bionty==0.48.1 ; extra == "bionty"
 Requires-Dist: pre-commit ; extra == "dev"
 Requires-Dist: nox ; extra == "dev"
 Requires-Dist: laminci>=0.3 ; extra == "dev"

{lamindb-0.75.0.dist-info → lamindb-0.76.0.dist-info}/RECORD

@@ -1,29 +1,29 @@
-lamindb/__init__.py,sha256=Ua3SskTHYGZID5uI9cI_KyVS3h0f93U6rUqxHVAjUm8,2249
-lamindb/_artifact.py,sha256=pu0d2CuRkT4xP5hLpkrKlSPU3Maihmdk1B7VKu-cjj4,42575
-lamindb/_can_validate.py,sha256=R5xZtCiH_rHl_PyAD1cHDYzd-n53KDtWiEkis6VGKsE,16347
-lamindb/_collection.py,sha256=vrvuww4MLPx6qHqRWy6tLvRHOmXdvEjYN7dnG9DIIPU,14894
-lamindb/_curate.py,sha256=lN7O7cmV703VDDOemvSENc7Jr35pqfI916ctYG7Psdc,45455
-lamindb/_feature.py,sha256=hLj5KDhIVkZrIa7IbiHGyUBGZS7PeDNxKsNK1EadBAc,7377
+lamindb/__init__.py,sha256=hMTLgL64GkHYHyLFHSCjR64xnvlZclrHKLlUWGuJ3i4,2249
+lamindb/_artifact.py,sha256=z3hJL0A0NQFDf0hvWYt-hZG1nX_tXog9QKtXwCIZxqU,42627
+lamindb/_can_validate.py,sha256=jPZHhtPaZJos5bL8Mk8ZNh34mItwYRwOynhofKUxwfY,17472
+lamindb/_collection.py,sha256=PIKeRZ9zttKSyzcz8UMjKNihPO1Qe-E2zfr-Ao5wtJo,14943
+lamindb/_curate.py,sha256=M42XxtcSKSo2Vh3xCio1UogVS0kCG1Dtx5cwEwnWOEM,55508
+lamindb/_feature.py,sha256=27PBSJoT0yI400WwdWPFz8cmUI4KAQ58jVep-wIDsfM,7373
 lamindb/_feature_set.py,sha256=DmAy96V_RyV0yiyvWOCHgustXPsCaMwn4TrWwh2qDd8,8104
 lamindb/_filter.py,sha256=I1tSIF-izmD48YpB8NtKmau59Vpt6C54RPHWc3oinGM,1412
 lamindb/_finish.py,sha256=3rGY4RxhcKR1BIdgf6GPB03AArhlV5vYtD6wxtTHYxE,10817
-lamindb/_from_values.py,sha256=HwnH3Q0d80DswF2Bs0q6S02RVjbcQb-fCRzwBDwb3Q8,12831
+lamindb/_from_values.py,sha256=zBOJGt_3mBKjqW5LuzuUysMwGbEcEFtYBJXAcL4Vx_0,13432
 lamindb/_is_versioned.py,sha256=Z_zVsHTnNaWvD15dEz18VocsSgka53jUzs_wDr78ltI,1344
 lamindb/_parents.py,sha256=eMavdd6IO6STOVJSlR2TzdRtx6sKYDKsMOtlR3DZlgQ,15599
 lamindb/_query_manager.py,sha256=6_ZqQr0SKTYsbMtJd5BmaMoyASIVel5v2F1KMgacWlU,4252
-lamindb/_query_set.py,sha256=LM5NsAWy5FCZZSxX1VbE20RdA5nsyk4_5p4abuMjdcI,11662
-lamindb/_record.py,sha256=Kv6dZhdbSo8NbOUXVwJ_ZY2P53NmBjdmUEMM7Xmvaoo,19076
-lamindb/_run.py,sha256=xj3ER4F_yWvuNw1mr0XU-QuIPi5hBO7Ue0ygBgJQ6mc,1887
-lamindb/_save.py,sha256=1A6NBy6Yp76fyc_5Sn7PMQZzwDHWu5KMVzqXrIt1hfg,11002
+lamindb/_query_set.py,sha256=f2OAE9j6l6MGAXgKp5wr8bXB1KRzkye9UCp4utyNHeI,10581
+lamindb/_record.py,sha256=PwelJVh5A0RMYa6o05wXvZU_gZyV8tPSILUW-M6m7lc,21195
+lamindb/_run.py,sha256=5M_r1zGDv9HlqbqRKTWCYCOtENovJ-8mQ4kY7XqcLaU,1888
+lamindb/_save.py,sha256=9lpFpQLgmPOp6JcoM9XetNkbYu2JgY70sGQZVz3Gzmw,11027
 lamindb/_storage.py,sha256=GBVChv-DHVMNEBJL5l_JT6B4RDhZ6NnwgzmUICphYKk,413
-lamindb/_transform.py,sha256=OtZmCSS-mxWPJU0S6p79sYauY-cKIxqBYfeMX0-SQ_A,3435
+lamindb/_transform.py,sha256=Vw0Ct15nCOmL8-UwDs-hH-rgdX8PfcAadgbh_ynBzQE,3397
 lamindb/_ulabel.py,sha256=XDSdZBXX_ki5s1vOths3MjF2x5DPggBR_PV_KF4SGyg,1611
 lamindb/_utils.py,sha256=LGdiW4k3GClLz65vKAVRkL6Tw-Gkx9DWAdez1jyA5bE,428
-lamindb/_view.py,sha256=_sAcSD06bC92R_LLDcHMhO0IfOqybBXXRYxOXvm1Juc,2322
-lamindb/core/__init__.py,sha256=HtyYVFrS6RclSk7gZty9vgXU0k2_oZiqFPfqghBc4Fc,1415
-lamindb/core/_data.py,sha256=LPfbWqTw3w5o_HygSg5V67hK7XFvbvv0QVzkk6kcFzY,16237
-lamindb/core/_feature_manager.py,sha256=NMC2SuIJJUJzgQjgupU2a0Gu6m0mjgnjbBf-hRXrO10,31585
-lamindb/core/_label_manager.py,sha256=5jbBF9aYPeeqpDZDimAXskGw76YUaQTQak6XAt6madU,9183
+lamindb/_view.py,sha256=4Ln2ItTb3857PAI-70O8eJYqoTJ_NNFc7E_wds6OGns,2412
+lamindb/core/__init__.py,sha256=uCtTkcUwJ7w40cWdaVBymiyxMuKlkdX-QZMtOr3k0us,1441
+lamindb/core/_data.py,sha256=AbBVvutI7iFZW5PVEYzx0HIlaLhR9KpnoPyba9OI86k,16253
+lamindb/core/_feature_manager.py,sha256=gJowe9-tifi0Z5IcChV-jtGYVdl6XgR2m_oswwhU17Y,31980
+lamindb/core/_label_manager.py,sha256=OO5Tl-ankQZNrF_PQ7_xfkuJ8ytMUvr-9cL9soe1Ceo,9249
 lamindb/core/_mapped_collection.py,sha256=wN2qEXnKrx0kqblVml_Kx9hYomUAZLYKckGXX4-9dr0,19621
 lamindb/core/_run_context.py,sha256=bk4hwbGbx1no-JKVpLioIOU5dyO8YCdg-srbQV7UuGE,18371
 lamindb/core/_settings.py,sha256=sDfIfq9H7H8nUE51FJF4EO_Zihlxh44S3GbaliHKJY4,6108
@@ -31,17 +31,17 @@ lamindb/core/_sync_git.py,sha256=qc0yfPyKeG4uuNT_3qsv-mkIMqhLFqfXNeNVO49vV00,454
 lamindb/core/_track_environment.py,sha256=STzEVUzOeUEWdX7WDJUkKH4u08k7eupRX6AXQwoVt14,828
 lamindb/core/exceptions.py,sha256=rNLDlqDJt6stM_HGeE9qR0oWRNn4Kq0WDdIi85P53VA,1057
 lamindb/core/fields.py,sha256=47Jmh3efUr5ZscgimR_yckY-I3cNf8ScLutbwKCK3j4,162
-lamindb/core/schema.py,sha256=sNrzWnqeyh9Ppr7yImlSAXiHb_VJdB5DWuO-QERxQGY,1847
+lamindb/core/schema.py,sha256=KiYQn_8fokSMztTNDe6qUocZzKXWxU32H-YChNJv51A,1877
 lamindb/core/types.py,sha256=uVBqSVLoQaTkqP9nqsJhwU6yYnx8H5e6-ZxrB6vpOOw,265
-lamindb/core/versioning.py,sha256=8fapNQmpxlUaiJG9oo9Y4I7xtFXzD077dMwzkeWTMMY,4965
+lamindb/core/versioning.py,sha256=bDpD_UejR7Jr-DTsIvoVV3SyHNxIdjziJvCyUSskxNc,4898
 lamindb/core/datasets/__init__.py,sha256=zRP98oqUAaXhqWyKMiH0s_ImVIuNeziQQ2kQ_t0f-DI,1353
-lamindb/core/datasets/_core.py,sha256=04mqj3IVIpY97HlD7VVL6-E6tf7za9suzE3lH07Z698,19564
+lamindb/core/datasets/_core.py,sha256=DnAKMw1MzCrEcqYHoRSaqZYRnO1wwpykPS3YThMN9Es,19827
 lamindb/core/datasets/_fake.py,sha256=BZF9R_1iF0HDnvtZNqL2FtsjSMuqDIfuFxnw_LJYIh4,953
-lamindb/core/storage/__init__.py,sha256=pLF8maqC18zrzIwbQZmBCmJJm34io7ECPDjdrb0-FMw,442
+lamindb/core/storage/__init__.py,sha256=MjKg2-p8EbOYTVsgufnK93ut7HG7_MzLDAqtzXt0U2Q,501
 lamindb/core/storage/_anndata_accessor.py,sha256=jmEZeeZlt8-qBXRkU0tTA-t6dVEb_dH86wc1ok0jSRY,24030
 lamindb/core/storage/_anndata_sizes.py,sha256=aXO3OB--tF5MChenSsigW6Q-RuE8YJJOUTVukkLrv9A,1029
 lamindb/core/storage/_backed_access.py,sha256=MsSgiIccHVhqOcur2lZ4mj5LSIL5OL8nX4eqK6mloU0,4732
-lamindb/core/storage/_valid_suffixes.py,sha256=J08aglC9oo35pzahj0SQXW9IHib8Asp4dc11co-2uys,212
+lamindb/core/storage/_valid_suffixes.py,sha256=9erE4FX1ArRoTkvn5pzUmlKQSYnKeQBymOnOPCv2TD4,465
 lamindb/core/storage/_zarr.py,sha256=5ceEz6YIvgvUnVVNWhK5Z4W0WfrvyvY82Yna5jSX1_E,3661
 lamindb/core/storage/objects.py,sha256=OzvBCS-Urz5mr-O95qYt6RGBDDX5HmjfRRKWPPDn1ZE,1797
 lamindb/core/storage/paths.py,sha256=I0UjQfXfh3MptfLgpA0iSyR-X9pLOvgtXNr4B_Lwk4g,7810
@@ -49,10 +49,10 @@ lamindb/core/subsettings/__init__.py,sha256=KFHPzIE7f7Bj4RgMjGQF4CjTdHVG_VNFBrCn
 lamindb/core/subsettings/_creation_settings.py,sha256=54mfMH_osC753hpxcl7Dq1rwBD2LHnWveXtQpkLBITE,1194
 lamindb/core/subsettings/_transform_settings.py,sha256=4YbCuZtJo6zdytl6UQR4GvdDkTtT6SRBqVzofGzNOt8,583
 lamindb/integrations/__init__.py,sha256=MoLRD_qqX5WHFUAqHL6zoY_cDkWH0zimaGT_1CyXKnk,124
-lamindb/integrations/_vitessce.py,sha256=VC80NKuzZ0FdjFxaLvyD78kAUNwvwBnGblSPDqT_mGQ,2737
+lamindb/integrations/_vitessce.py,sha256=jcpLUNFq1BsDpZDkG5L3nzWNXDLuy3Eep_GfY0XqhhA,5077
 lamindb/setup/__init__.py,sha256=OwZpZzPDv5lPPGXZP7-zK6UdO4FHvvuBh439yZvIp3A,410
 lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
-lamindb-0.75.0.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-lamindb-0.75.0.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
-lamindb-0.75.0.dist-info/METADATA,sha256=JH3tndNGYawedC8nYQRkX60azWmKmUKmRuxNn0sZOkg,2669
-lamindb-0.75.0.dist-info/RECORD,,
+lamindb-0.76.0.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+lamindb-0.76.0.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
+lamindb-0.76.0.dist-info/METADATA,sha256=5NduEIMIlIq6hW-MADbfFtJKsuxY5JZGQwlBO5WZxUQ,2669
+lamindb-0.76.0.dist-info/RECORD,,