lamindb 0.74.2__py3-none-any.whl → 0.75.0__py3-none-any.whl

lamindb/core/storage/paths.py

@@ -39,7 +39,7 @@ is_run_from_ipython = getattr(builtins, "__IPYTHON__", False)
 
 # add type annotations back asap when re-organizing the module
 def auto_storage_key_from_artifact(artifact: Artifact):
-    if artifact.key is None or artifact.key_is_virtual:
+    if artifact.key is None or artifact._key_is_virtual:
         is_dir = artifact.n_objects is not None
         return auto_storage_key_from_artifact_uid(artifact.uid, artifact.suffix, is_dir)
     else:
@@ -56,6 +56,14 @@ def auto_storage_key_from_artifact_uid(uid: str, suffix: str, is_dir: bool) -> s
     return storage_key
 
 
+def check_path_is_child_of_root(path: Path | UPath, root: Path | UPath | None) -> bool:
+    # str is needed to eliminate UPath storage_options
+    # from the equality checks below
+    path = UPath(str(path))
+    root = UPath(str(root))
+    return root.resolve() in path.resolve().parents
+
+
 def attempt_accessing_path(
     artifact: Artifact,
     storage_key: str,
@@ -141,19 +149,6 @@ def delete_storage(
     storagepath: Path, raise_file_not_found_error: bool = True
 ) -> None | str:
     """Delete arbitrary artifact."""
-    # TODO is_relative_to is not available in 3.8 and deprecated since 3.12
-    # replace with check_path_is_child_of_root but this needs to first be debugged
-    # if not check_path_is_child_of_root(storagepath, settings.storage.root):
-    if not storagepath.is_relative_to(settings.storage.root):  # type: ignore
-        allow_delete = False
-        if setup_settings.instance.keep_artifacts_local:
-            allow_delete = storagepath.is_relative_to(  # type: ignore
-                setup_settings.instance.storage_local.root
-            )
-        if not allow_delete:
-            logger.warning("couldn't delete files outside of default storage")
-            return "did-not-delete"
-    # only delete files in the default storage
     if storagepath.is_file():
         storagepath.unlink()
     elif storagepath.is_dir():

lamindb/core/types.py

@@ -7,9 +7,12 @@
    StrField
    ListLike
    TransformType
+   ArtifactType
 """
+
 from lamindb_setup.core.types import UPathStr
 from lnschema_core.types import (
+    ArtifactType,
     ListLike,
     StrField,
     TransformType,

lamindb/core/versioning.py

@@ -136,7 +136,7 @@ def process_is_new_version_of(
     type: type[IsVersioned],
 ) -> tuple[str, str, str]:
     if is_new_version_of is not None and not isinstance(is_new_version_of, type):
-        raise TypeError(f"is_new_version_of has to be of type {type}")
+        raise TypeError(f"is_new_version_of has to be of type {type.__name__}")
     if is_new_version_of is None:
         uid = init_uid(version=version, n_full_id=type._len_full_uid)
     else:

lamindb/integrations/__init__.py

@@ -5,4 +5,5 @@
 
    save_vitessce_config
 """
+
 from ._vitessce import save_vitessce_config

{lamindb-0.74.2.dist-info → lamindb-0.75.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lamindb
-Version: 0.74.2
+Version: 0.75.0
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.8
@@ -9,10 +9,10 @@ Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
-Requires-Dist: lnschema_core==0.70.5
-Requires-Dist: lamindb_setup==0.74.1
+Requires-Dist: lnschema_core==0.72.1
+Requires-Dist: lamindb_setup==0.76.2
 Requires-Dist: lamin_utils==0.13.2
-Requires-Dist: lamin_cli==0.15.0
+Requires-Dist: lamin_cli==0.16.0
 Requires-Dist: rapidfuzz
 Requires-Dist: pyarrow
 Requires-Dist: typing_extensions!=4.6.0
@@ -24,7 +24,7 @@ Requires-Dist: pandas
 Requires-Dist: graphviz
 Requires-Dist: psycopg2-binary
 Requires-Dist: lamindb_setup[aws] ; extra == "aws"
-Requires-Dist: bionty==0.44.2 ; extra == "bionty"
+Requires-Dist: bionty==0.47.1 ; extra == "bionty"
 Requires-Dist: pre-commit ; extra == "dev"
 Requires-Dist: nox ; extra == "dev"
 Requires-Dist: laminci>=0.3 ; extra == "dev"
@@ -37,7 +37,7 @@ Requires-Dist: faker-biology ; extra == "dev"
 Requires-Dist: django-schema-graph ; extra == "erdiagram"
 Requires-Dist: readfcs>=1.1.8 ; extra == "fcs"
 Requires-Dist: lamindb_setup[gcp] ; extra == "gcp"
-Requires-Dist: nbproject==0.10.3 ; extra == "jupyter"
+Requires-Dist: nbproject==0.10.4 ; extra == "jupyter"
 Requires-Dist: nbstripout==0.6.1 ; extra == "jupyter"
 Requires-Dist: nbconvert ; extra == "jupyter"
 Requires-Dist: zarr>=2.16.0 ; extra == "zarr"

lamindb-0.75.0.dist-info/RECORD

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lamindb-0.74.2.dist-info/RECORD

@@ -1,57 +0,0 @@
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