lamindb 0.71.2__py3-none-any.whl → 0.72.0__py3-none-any.whl

lamindb/core/schema.py

@@ -0,0 +1,53 @@
+from typing import Type
+
+from lnschema_core.models import Feature, FeatureSet, LinkORM, Registry
+
+
+def dict_schema_name_to_model_name(orm: Type[Registry]) -> dict[str, Registry]:
+    d: dict = {
+        i.related_model.__get_name_with_schema__(): i.related_model
+        for i in orm._meta.related_objects
+        if i.related_name is not None
+    }
+    d.update(
+        {
+            i.related_model.__get_name_with_schema__(): i.related_model
+            for i in orm._meta.many_to_many
+            if i.name is not None
+        }
+    )
+    return d
+
+
+def dict_related_model_to_related_name(orm: Type[Registry]) -> dict[str, str]:
+    d: dict = {
+        i.related_model.__get_name_with_schema__(): i.related_name
+        for i in orm._meta.related_objects
+        if (i.name is not None and not issubclass(i.related_model, LinkORM))
+    }
+    d.update(
+        {
+            i.related_model.__get_name_with_schema__(): i.name
+            for i in orm._meta.many_to_many
+            if (i.name is not None and not issubclass(i.related_model, LinkORM))
+        }
+    )
+
+    return d
+
+
+def get_related_name(features_type: type[Registry]) -> str:
+    candidates = [
+        field.related_name
+        for field in FeatureSet._meta.related_objects
+        if field.related_model == features_type
+    ]
+    if not candidates:
+        raise ValueError(
+            f"Can't create feature sets from {features_type.__name__} because it's not"
+            " related to it!\nYou need to create a link model between FeatureSet and"
+            " your Registry in your custom schema.\nTo do so, add a"
+            " line:\nfeature_sets = models.ManyToMany(FeatureSet,"
+            " related_name='mythings')\n"
+        )
+    return candidates[0]

{lamindb-0.71.2.dist-info → lamindb-0.72.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lamindb
-Version: 0.71.2
+Version: 0.72.0
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.8
@@ -9,10 +9,10 @@ Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
-Requires-Dist: lnschema_core==0.66.4
-Requires-Dist: lamindb_setup==0.71.3
+Requires-Dist: lnschema_core==0.67.1
+Requires-Dist: lamindb_setup==0.72.1
 Requires-Dist: lamin_utils==0.13.2
-Requires-Dist: lamin_cli==0.13.1
+Requires-Dist: lamin_cli==0.13.2
 Requires-Dist: rapidfuzz
 Requires-Dist: pyarrow
 Requires-Dist: typing_extensions!=4.6.0
@@ -23,8 +23,9 @@ Requires-Dist: fsspec
 Requires-Dist: pandas
 Requires-Dist: graphviz
 Requires-Dist: psycopg2-binary
+Requires-Dist: psutil
 Requires-Dist: lamindb_setup[aws] ; extra == "aws"
-Requires-Dist: bionty==0.42.9 ; extra == "bionty"
+Requires-Dist: bionty==0.43.0 ; extra == "bionty"
 Requires-Dist: pandas<2 ; extra == "dev"
 Requires-Dist: pre-commit ; extra == "dev"
 Requires-Dist: nox ; extra == "dev"
@@ -37,7 +38,7 @@ Requires-Dist: faker-biology ; extra == "dev"
 Requires-Dist: django-schema-graph ; extra == "erdiagram"
 Requires-Dist: readfcs>=1.1.8 ; extra == "fcs"
 Requires-Dist: lamindb_setup[gcp] ; extra == "gcp"
-Requires-Dist: nbproject==0.10.2 ; extra == "jupyter"
+Requires-Dist: nbproject==0.10.3 ; extra == "jupyter"
 Requires-Dist: nbstripout==0.6.1 ; extra == "jupyter"
 Requires-Dist: nbconvert ; extra == "jupyter"
 Requires-Dist: zarr>=2.16.0 ; extra == "zarr"

{lamindb-0.71.2.dist-info → lamindb-0.72.0.dist-info}/RECORD

@@ -1,41 +1,42 @@
-lamindb/__init__.py,sha256=GKrW6unkqBBwwpxTXjuUv-5k4c4unimsV-vGFSWt68I,2182
-lamindb/_annotate.py,sha256=kgbilILfgzoS-GEpjxzVwRMs7CoSa9BNEcIWXFBW69I,43915
-lamindb/_artifact.py,sha256=8uBW-dhuWyBUQGs728sAPCnuhTic-NKjSbaneF07aMo,40106
-lamindb/_can_validate.py,sha256=nvoZG-35n3HofkY4Xc6hBv9AV54_RDan7Hzp5TuqY9I,14709
-lamindb/_collection.py,sha256=SDM35R_5WHrgLKjVb14Q8-Rz_gn5hdZLJobPcanm4PM,14627
-lamindb/_feature.py,sha256=srAKchY7gqD-h-cWlEiAWuHlpFKFwv0PWIA-JX0Go8c,6758
-lamindb/_feature_set.py,sha256=AzjOcHzQajpeikPOAic-aj0z_C5b7VpHVegg3ThRSLw,9045
+lamindb/__init__.py,sha256=BIkb2v3ZeJMt2gk9y1MbuzMNoXNRQAd9ZBDGQCii7Yc,2207
+lamindb/_annotate.py,sha256=akN5xzOYy_1JytL-f9luxACII5rrktXNYT3LED3EvPQ,43887
+lamindb/_artifact.py,sha256=tXgHgryFC23ATmuL66PoEoL6Ccbwm3gu0IT36xYDmGY,40630
+lamindb/_can_validate.py,sha256=s1q0lxplqnhytrVgArBTm05XKMMmpreK0ZlVCsd2jjk,14849
+lamindb/_collection.py,sha256=L1FMZitXuLfu3-INkDjhS2os42XXZ1tWrTW3rYPic50,14631
+lamindb/_feature.py,sha256=Aawz4jCgjhuneZnmoty7JkZI3zjA_50vr_0dnFjSN3U,7348
+lamindb/_feature_set.py,sha256=dbASQtmRNG3yIqXcGXQRx0hLQoKs1u6GZlWvz5U_cTM,8108
 lamindb/_filter.py,sha256=xnjJzjF3Zj4dK_Kfymvhgczk27MhhXz5ZYc7XINbgHY,1331
 lamindb/_finish.py,sha256=6GwhqrC-x-JdFd16i7-uyhCWeQgGKxr25aSsSXPZt4g,8598
-lamindb/_from_values.py,sha256=DVXjnQ2wwNw-2bFzy0uXLdVlqoprrn95hTnrXwn-KqM,12638
+lamindb/_from_values.py,sha256=DiDGuql1PTSeiYF5amYgvZVFmE34DD2y4FirW9TYMFE,13416
 lamindb/_is_versioned.py,sha256=0PgRCmxEmYDcAjllLSOYZm132B1lW6QgmBBERhRyFt0,1341
 lamindb/_parents.py,sha256=N9T8jbd3eaoHDLE9TD1y1QgGcO81E6Brapy8LILzRCQ,14790
-lamindb/_query_manager.py,sha256=3zokXqxgj9vTJBnN2sbYKS-q69fyDDPF_aGq_rFHzXU,4066
+lamindb/_query_manager.py,sha256=DFlfcs6clZGM-qDvDWKvZm4SftHm_1V4nth4YZHEy68,4223
 lamindb/_query_set.py,sha256=n0owd74cTzGz6-mIv8SlDz0wcyRz7Xw3Ke1LhE8UlIg,10784
-lamindb/_registry.py,sha256=fmX-BUnan3Y0WrEAx3qNwRYCIJwJgjoKnRnpgcXujEI,19358
-lamindb/_run.py,sha256=We50MUeGH778begutDGoNFM-n5_81_BfMCnZS1bdkt0,1937
-lamindb/_save.py,sha256=_7r3TUV3B6Hp75r5O_ymu3fKWyBHbGa5vmE_pxrtsVI,10923
+lamindb/_registry.py,sha256=Mc74KGt5auJFWWtnG6iwZ-7EVLR89nM67UrC0QC11r4,18362
+lamindb/_run.py,sha256=b7A52M1On3QzFgIYyfQoz5Kk7V3wcu9p_Prq5bzd8v8,1838
+lamindb/_save.py,sha256=pksthZrL3SMjLoFGmRNnCO92iXHHHhRk9mpOlW7lXTU,11514
 lamindb/_storage.py,sha256=VW8xq3VRv58-ciholvOdlcgvp_OIlLxx5GxLt-e2Irs,614
 lamindb/_transform.py,sha256=E9C7psuOnsNrUQpWRuGgEUM8_pc7YhDn7n4ieHzB4X0,3169
 lamindb/_ulabel.py,sha256=e5dw9h1tR0_u-DMn7Gzx0WhUhV5w7j4v3QbnLWQV7eI,1941
 lamindb/_utils.py,sha256=LGdiW4k3GClLz65vKAVRkL6Tw-Gkx9DWAdez1jyA5bE,428
 lamindb/_view.py,sha256=GV1FrqIMmdooEkA-5zvcTWgV1nqx1sehi6WdWEaFpxM,2171
-lamindb/core/__init__.py,sha256=TI9_1Jtpwae_cUPQ3-U0RRPH5c3GBA-gLhHvlAk_Nlo,1213
-lamindb/core/_data.py,sha256=Lico6-Vx15bNpGLl1bqFqEsh62pD4YKOOBnmahse1tI,17673
-lamindb/core/_feature_manager.py,sha256=uTzZZ7-qqEAmdwi48Holy2j5VGTgmoQxhb21r6mLShI,15824
-lamindb/core/_label_manager.py,sha256=0RtegYnK3zIisOnd970EobOrHMpp7OCH-mEoPrPXw2c,9075
+lamindb/core/__init__.py,sha256=hqKb2BZ7llz4XYU-fhWxi-lFQ4yjkDz069GJOh68a6w,1277
+lamindb/core/_data.py,sha256=fJgLb7fqdArO7HaV6uFW35h4v4-08RpFl85ke9U-2Cw,18759
+lamindb/core/_feature_manager.py,sha256=HEqwJzBFMqd7RBYCcG4sg8NTdmIILjbUi0wHs5lhbxE,19816
+lamindb/core/_label_manager.py,sha256=EDM7nLwGYbAN938eMGSRFOaUrUXxJ6ZMijGgheTIGxI,9730
 lamindb/core/_mapped_collection.py,sha256=_OwFZh5SePDUD70XIK5kngv3we_Z5-YdGHNfpUSatSQ,19469
-lamindb/core/_run_context.py,sha256=7iCCOB2z154puBI7ZKzcaEZ5l6_9S8aSYBOBJI65lyc,17117
+lamindb/core/_run_context.py,sha256=x0nOCCBFiW_bJFwOUeSce66Ek6Y15mXaEoLt-hJNMVI,18000
 lamindb/core/_settings.py,sha256=rW1KfEXfT56XErwcnSuQxaCytpOy1kJ-u7tVmkmNmxY,6131
 lamindb/core/_sync_git.py,sha256=06Te35UZj2QBaHNcc59VSC9vJgcFct7Z2sK78NLkZBs,4119
 lamindb/core/_track_environment.py,sha256=xLZ6kgzxWS6MWZ5LQ_wkbJX99vmYOT8iQ-Fz4OHCgWw,754
 lamindb/core/_transform_settings.py,sha256=eV96QKX9jOojjzF-a0oo0wXQsMXN2F6QV7orE06oFC8,161
 lamindb/core/exceptions.py,sha256=PHk5lyBdJPrrEQcid3ItfdNzz3fgiQsUmsEDdz063F0,197
 lamindb/core/fields.py,sha256=Jgi_XI-iTe6cT7oD8FV_JqEpjN1Q9rZWwL8VLtj4jkA,164
+lamindb/core/schema.py,sha256=seWCTDetuDpg7UH8UfMByDs4kLFTrLsGB5L2J2zgcoU,1737
 lamindb/core/types.py,sha256=xeQF2x40p2pR9eIVQrXT74RrS810z2fbjmTRTSQUqPM,230
 lamindb/core/versioning.py,sha256=T9d28erodCUmFlRA7InralbRoffdniPQxBE7qWqs2u8,3601
 lamindb/core/datasets/__init__.py,sha256=zRP98oqUAaXhqWyKMiH0s_ImVIuNeziQQ2kQ_t0f-DI,1353
-lamindb/core/datasets/_core.py,sha256=9bcDfVfMZ1h1WAS88ZBjy-R91xbP2KIm_ofHguXAKpY,20177
+lamindb/core/datasets/_core.py,sha256=b-Bmv9oQT_dfBq_leTcKiFuXml5tsaiaX5wuggyAqmQ,19869
 lamindb/core/datasets/_fake.py,sha256=BZF9R_1iF0HDnvtZNqL2FtsjSMuqDIfuFxnw_LJYIh4,953
 lamindb/core/storage/__init__.py,sha256=5LUFQKRr2BX24d-yWBezhTXBV83sShcOvPj5Y5u6qIg,441
 lamindb/core/storage/_anndata_sizes.py,sha256=aXO3OB--tF5MChenSsigW6Q-RuE8YJJOUTVukkLrv9A,1029
@@ -48,7 +49,7 @@ lamindb/integrations/__init__.py,sha256=aH2PmO2m4-vwIifMYTB0Fyyr_gZWtVnV71jT0tVW
 lamindb/integrations/_vitessce.py,sha256=b0FqTBsP-M6Q7xCYXVwFwM8DOIeeOBZEhYbryhtq4gk,2535
 lamindb/setup/__init__.py,sha256=OwZpZzPDv5lPPGXZP7-zK6UdO4FHvvuBh439yZvIp3A,410
 lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
-lamindb-0.71.2.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-lamindb-0.71.2.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
-lamindb-0.71.2.dist-info/METADATA,sha256=l49_xPwqfUDB6jUvUQoAVeQu8Tj3JUNCfTPB9cqOq_Y,2674
-lamindb-0.71.2.dist-info/RECORD,,
+lamindb-0.72.0.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+lamindb-0.72.0.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
+lamindb-0.72.0.dist-info/METADATA,sha256=cNq8WjpNO8SxpKwpMb4Yc-vzY9VeYcuJ0hjA6ybiw5I,2696
+lamindb-0.72.0.dist-info/RECORD,,